BAC Information

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BAC

Clone NameB6Ng01-015D18
Chromosome9 (Build37)
Map Location 33,306,177 - 33,493,840
singlet/doubletdoublet
Overlap genenone
Upstream geneFli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015D18.bB6Ng01-015D18.g
ACCDH849549DH849550
length1,1481,066
definitionDH849549|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D18, 5' end.DH849550|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,306,177 - 33,307,348)(33,492,784 - 33,493,840)
sequence
gaattccaagcccaaggtcttgctcaaggacgatctgggactgttggaac
actgaggctttagctatgtcagaattaaatcttaaaaggcacttataatg
agatgatactgaaagagagcacgtagatccatacaatagactaacgtggg
aacggagaattaagagaaagccagactccaggagaagagcttccttgaaa
ctcttttcctcatgagtgacttttaagtctctcagcttccgctgactcga
ccagagtgcgtggcacatgcccatccacatcagctagaaggtttccctga
gatcttctcagattctgtacatggcactaggcatatttatcctgcctgct
cttgtatttggagaccaaggagcattgtagcttacttattttccctgttt
tctgtgcggcaggggactttgtcctccatcctgaaagcttagagcaaagc
tttaggagttgcaggagattatgattccattaaagagctgtactgtgcct
tgaaccacctcctcctctccctgtgatgatcctaattttctctcaatatt
tctcaggtccacatggtacaagcttttaatcatagactttaagtcactaa
aatgactctgagcaaatgcttaaaacaaacaactggatctcagaataact
agttggaagctgcaaatatacaccaagggatgccctttgttatttgctaa
tgaagctagcaactgaccttgctggagagtcaattcaatgtgggcagaaa
ggattaactcgcccagccagtaccaaaaggagaagaaagtaaaagctggg
atgcaatagtaccacctcaacatatctcttattattcttaaccttagctg
actcgattaacctgaaatccttataaacagaatctttattttctaaggca
gctacgcttggttgaggtggagctcgaaactgcagaaagccaagctggag
aaattctgacttctaggtaagtaatcaacactcatgaaaagcaaagaatg
atctcacaatatatgatagacaacgggtgtagtcagctgagctattaatg
tttactacaattctactcaatatcatgcaacgaaagggcagtgacgatgt
atgagatgtctgaacctcagtccattaatttgtattttttgggggggg
gaattcattaaatatgtattgagccagcttaagatggaaattgttataaa
aactggcaacagttcaaaacagcaaaatggttcagtttatgatggagata
tcttactccctcctggatcccgtgttccattagtccattcagactggcaa
ggcaggagtcatccctacccacaggacatggtaattgctgcaactgctca
tgtggcagttcttggaggcaagtaacacactgccattccatccaggtgtt
cccttgcccaggaggctcggtgtgctgcaagttctgcatattcacctaag
tgctgactcctgattgcttgcaggtgggatttgagactattggaataagc
aagcctgggagcaaagctttgtgcaggtactgtgtaccttggggagtaag
gaagaaatgaagaaggaagaactgaacgtgctgcatagctttgatgaaac
agagcctgactcttatagcaagtgtggcaagcattaatccagtggctatc
atcacgttgtgtaagacagcctggtgatcttatgtgcccataccatacag
aaaacaatcattacgttgtgcctgaaatgtaggtggtgcaggcatttcag
ctaagctatccgaatgaattcctgatattgagaaaaaattctgctctgaa
aattaacaaggctaaagaagcatggtgtcaacttcagcctacacaaacta
tatacatttgatttatcagacaggtagagaaacatcagcaatctttaaca
gttaaagtgcaaataagtaaaaaagtaaatatatgtttctaaaaggaaaa
acagtaaaggtaacttaacgtgaaaaggttgacagaaaggtgaaatcttt
tgagtccaagtcaacgtgtaccaagcttcagggatgcagaacacaacata
ttaataaacaggatgggcagcactgtgcttttctgtaatttcttatgttc
atcttatatagtcatgttaaaggtgctgtacctacccagcaaaaaatgcc
atggggtgttttctggcttttcctttatctactgccttcggtggaatgga
actcctttgaattatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33306177_33307348
seq2: B6Ng01-015D18.b_44_1191

seq1  GAATTCCAAGCCCAAGGTCTTGCTCAAGGACGATCTGGGACTGTTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAAGGTCTTGCTCAAGGACGATCTGGGACTGTTGGAAC  50

seq1  ACTGAGGCTTTAGCTATGTCAGAATTAAATCTTAAAAGGCACTTATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTTTAGCTATGTCAGAATTAAATCTTAAAAGGCACTTATAATG  100

seq1  AGATGATACTGAAAGAGAGCACGTAGATCCATACAATAGACTAACGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATACTGAAAGAGAGCACGTAGATCCATACAATAGACTAACGTGGG  150

seq1  AACGGAGAATTAAGAGAAAGCCAGACTCCAGGAGAAGAGCTTCCTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGAATTAAGAGAAAGCCAGACTCCAGGAGAAGAGCTTCCTTGAAA  200

seq1  CTCTTTTCCTCATGAGTGACTTTTAAGTCTCTCAGCTTCCGCTGACTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCCTCATGAGTGACTTTTAAGTCTCTCAGCTTCCGCTGACTCGA  250

seq1  CCAGAGTGCGTGGCACATGCCCATCCACATCAGCTAGAAGGTTTCCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGCGTGGCACATGCCCATCCACATCAGCTAGAAGGTTTCCCTGA  300

seq1  GATCTTCTCAGATTCTGTACATGGCACTAGGCATATTTATCCTGCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTCAGATTCTGTACATGGCACTAGGCATATTTATCCTGCCTGCT  350

seq1  CTTGTATTTGGAGACCAAGGAGCATTGTAGCTTACTTATTTTCCCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTGGAGACCAAGGAGCATTGTAGCTTACTTATTTTCCCTGTTT  400

seq1  TCTGTGCGGCAGGGGACTTTGTCCTCCATCCTGAAAGCTTAGAGCAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCGGCAGGGGACTTTGTCCTCCATCCTGAAAGCTTAGAGCAAAGC  450

seq1  TTTAGGAGTTGCAGGAGATTATGATTCCATTAAAGAGCTGTACTGTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGTTGCAGGAGATTATGATTCCATTAAAGAGCTGTACTGTGCCT  500

seq1  TGAACCACCTCCTCCTCTCCCTGTGATGATCCTAATTTTCTCTCAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACCTCCTCCTCTCCCTGTGATGATCCTAATTTTCTCTCAATATT  550

seq1  TCTCAGGTCCACATGGTACAAGCTTTTAATCATAGACTTTAAGTCACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTCCACATGGTACAAGCTTTTAATCATAGACTTTAAGTCACTAA  600

seq1  AATGACTCTGAGCAAATGCTTAAAACAAACAACTGGATCTCAGAATAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCTGAGCAAATGCTTAAAACAAACAACTGGATCTCAGAATAACT  650

seq1  AGTTGGAAGCTGCAAATATACACCAA-GGATGCCCTTTGTTATTTGCTAA  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTTGGAAGCTGCAAATATACACCAAGGGATGCCCTTTGTTATTTGCTAA  700

seq1  TGAAGCTAGCAACTGACCTTGCTGGAGAGTCAATTCAATGTGGGCAG-AA  748
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAAGCTAGCAACTGACCTTGCTGGAGAGTCAATTCAATGTGGGCAGAAA  750

seq1  GGATTAACTCGCCCAGCCAGTACCAAAAGGAGAAGAAAGTAAAAGCTGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAACTCGCCCAGCCAGTACCAAAAGGAGAAGAAAGTAAAAGCTGGG  800

seq1  ATGCAATAGTA-CACCTCAACATATCTCTTATTATTCTTAACCTTAGCTG  847
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATAGTACCACCTCAACATATCTCTTATTATTCTTAACCTTAGCTG  850

seq1  ACTCGATTAACCTGAAATCCTTATAAACAGAATCTTTATTTCCT-AGGCA  896
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  ACTCGATTAACCTGAAATCCTTATAAACAGAATCTTTATTTTCTAAGGCA  900

seq1  GCTACGCTTGGTTGAGGTGGAGCTCGAAACTGCAGAAAAGCCAAGCT-GA  945
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  GCTACGCTTGGTTGAGGTGGAGCTCGAAACTGCAG-AAAGCCAAGCTGGA  949

seq1  GAAATTCTGAC-TCTAGGTAAGTAATCAAACAACTTCATGAAAAGCAAAG  994
      ||||||||||| ||||||||||||||| ||||   |||||||||||||||
seq2  GAAATTCTGACTTCTAGGTAAGTAATC-AACA--CTCATGAAAAGCAAAG  996

seq1  AATGAATCTCACACATATTATGATAGACAAACGGCTGTAGTCAGGCTGAG  1044
      |||| |||||||| ||| |||||||||| ||||| |||||||| ||||||
seq2  AATG-ATCTCACA-ATA-TATGATAGAC-AACGGGTGTAGTCA-GCTGAG  1041

seq1  CTATTAAAATGTTTTACTTACAATTCCTACCTCAATTATCCATGCAAACA  1094
      |||||  |||| ||||| ||||||| ||| ||||| ||| |||||||   
seq2  CTATT--AATG-TTTAC-TACAATT-CTA-CTCAA-TAT-CATGCAA--C  1081

seq1  GAAAGGGCCAGTGAACCAGATGATAGAGAGATG-CTGAACATCAGTACAA  1143
      ||||||| ||||||    |||| ||  |||||| |||||| ||||| || 
seq2  GAAAGGG-CAGTGA---CGATG-TA-TGAGATGTCTGAACCTCAGTCCA-  1124

seq1  TTTAAATTTGATTTTTTTTTTGGGGGGGG  1172
        | ||||||   | ||||||||||||||
seq2  --TTAATTTG---TATTTTTTGGGGGGGG  1148

seq1: chr9_33492784_33493840
seq2: B6Ng01-015D18.g_68_1133 (reverse)

seq1  CATAATTCAAAGGAGTTCACT--CACAGAAGGCAGTGAGATAA--GGAAA  46
      ||||||||||||||||||  |  ||| ||||||||| ||||||  | |||
seq2  CATAATTCAAAGGAGTTCCATTCCACCGAAGGCAGT-AGATAAAGGAAAA  49

seq1  GGCAGAAAACA-CCCATGGCATTTTTTGCT-GGTAGGTAACAGCACC-TT  93
      | ||||||||| |||||||||||||||||| ||||||| |||||||| ||
seq2  GCCAGAAAACACCCCATGGCATTTTTTGCTGGGTAGGT-ACAGCACCTTT  98

seq1  AACATGACTATATTAAGATGAACATAAGAAATTACAG-AAAGCACAGTGC  142
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  AACATGACTATA-TAAGATGAACATAAGAAATTACAGAAAAGCACAGTGC  147

seq1  TGCCCATGCTTGTTATT-ATATGTTGTGTTCTGCAT-CCTGAAGCTTGGT  190
      ||||||| ||  ||||| |||||||||||||||||| |||||||||||||
seq2  TGCCCATCCTGTTTATTAATATGTTGTGTTCTGCATCCCTGAAGCTTGGT  197

seq1  ACACGTTGACTTGGACTCAAAGATTTTCACCTTTCTTGTCAACCTTTTCA  240
      |||||||||||||||||||||   ||||||||||| ||||||||||||||
seq2  ACACGTTGACTTGGACTCAAAAGATTTCACCTTTC-TGTCAACCTTTTCA  246

seq1  CGTT-AGTTACCTTTACTGTTTTTCCTTTTAGAAACATATATTTACTTTT  289
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAAGTTACCTTTACTGTTTTTCCTTTTAGAAACATATATTTACTTTT  296

seq1  TTACTTATTTGCACTTTAACTGTT-AAGATTGCTGATGTTTCTCTACCTG  338
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTACTTATTTGCACTTTAACTGTTAAAGATTGCTGATGTTTCTCTACCTG  346

seq1  TCTGAT-AATCAAATGTATATAGTTTGTGTAGGCTGAAGTTGACACCATG  387
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAATCAAATGTATATAGTTTGTGTAGGCTGAAGTTGACACCATG  396

seq1  CTTCTTTAGCCTTGTTAATTTTCAGAGCAGAATTTTTTCTCAATATCAGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTAGCCTTGTTAATTTTCAGAGCAGAATTTTTTCTCAATATCAGG  446

seq1  AATTCATTCGGATAGCTTAGCTGAAATGCCTGCACCACCTACATTTCAGG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCGGATAGCTTAGCTGAAATGCCTGCACCACCTACATTTCAGG  496

seq1  CACAACGTAATGATTGTTTTCTGTATGGTATGGGCACATAAGATCACCAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACGTAATGATTGTTTTCTGTATGGTATGGGCACATAAGATCACCAG  546

seq1  GCTGTCTTACACAACGTGATGATAGCCACTGGATTAATGCTTGCCACACT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTACACAACGTGATGATAGCCACTGGATTAATGCTTGCCACACT  596

seq1  TGCTATAAGAGTCAGGCTCTGTTTCATCAAAGCTATGCAGCACGTTCAGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAGAGTCAGGCTCTGTTTCATCAAAGCTATGCAGCACGTTCAGT  646

seq1  TCTTCCTTCTTCATTTCTTCCTTACTCCCCAAGGTACACAGTACCTGCAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTTCATTTCTTCCTTACTCCCCAAGGTACACAGTACCTGCAC  696

seq1  AAAGCTTTGCTCCCAGGCTTGCTTATTCCAATAGTCTCAAATCCCACCTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGCTCCCAGGCTTGCTTATTCCAATAGTCTCAAATCCCACCTG  746

seq1  CAAGCAATCAGGAGTCAGCACTTAGGTGAATATGCAGAACTTGCAGCACA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATCAGGAGTCAGCACTTAGGTGAATATGCAGAACTTGCAGCACA  796

seq1  CCGAGCCTCCTGGGCAAGGGAACACCTGGATGGAATGGCAGTGTGTTACT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCCTCCTGGGCAAGGGAACACCTGGATGGAATGGCAGTGTGTTACT  846

seq1  TGCCTCCAAGAACTGCCACATGAGCAGTTGCAGCAATTACCATGTCCTGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAAGAACTGCCACATGAGCAGTTGCAGCAATTACCATGTCCTGT  896

seq1  GGGTAGGGATGACTCCTGCCTTGCCAGTCTGAATGGACTAATGGAACACG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGATGACTCCTGCCTTGCCAGTCTGAATGGACTAATGGAACACG  946

seq1  GGATCCAGGAGGGAGTAAGATATCTCCATCATAAACTGAACCATTTTGCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGGAGGGAGTAAGATATCTCCATCATAAACTGAACCATTTTGCT  996

seq1  GTTTTGAACTGTTGCCAGTTTTTATAACAATTTCCATCTTAAGCTGGCTC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAACTGTTGCCAGTTTTTATAACAATTTCCATCTTAAGCTGGCTC  1046

seq1  AATACATATTTAATGAATTC  1057
      ||||||||||||||||||||
seq2  AATACATATTTAATGAATTC  1066