BAC Information

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BAC

Clone NameB6Ng01-015F09
Chromosome9 (Build37)
Map Location 70,518,530 - 70,656,913
singlet/doubletdoublet
Overlap geneAdam10, Cycs-ps1, Lipc
Upstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik
Downstream geneLOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015F09.bB6Ng01-015F09.g
ACCDH849626DH849627
length445974
definitionDH849626|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F09, 5' end.DH849627|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,518,530 - 70,518,973)(70,655,932 - 70,656,913)
sequence
gaattctagagagtagactacaagattccccttagaaggttaattcagag
ttaaggttggattagaaaggataatgttgggtgatgaggaaggacagagt
ctaggtaaaggacacttagttacaaagtaattgtttttctagttttaact
ctgtcatagattttctttcctttctttttgtagataagtgcatacaatgt
ttaaaagtcgatttttttttttttttttttttttggaaacatggtttctt
tgtatagttctggttgtccctgaacttgttctgtagaccaggttggcctg
gaactcacagagatccacttgcctctgcctcctgaatgctgggattaaag
gtgggtgccaccactgcccagcaagtggataaaatataattgaaaatata
taagcctaagcaaaggttaacagttttaaaatggctactctaatt
gaattcatttcacgtcaagattctccaaaaaagtgcctgcactcatgcgg
agctccagtgcagacgtggggtctgcaggagtgctctgtgaataccagtg
gtctcaacatcgggaggaatggccacccccacccaccacacacacacaca
cacacacacacacacacacacacacacctttgttatcattccattagatc
attttaactattttgaacttttaggacaggacctcacgatgaatcctaag
ctggcctcaaacttgtggcggtccttctgcctctgcctttcaaggtctgg
gattgcagctgtgtgccaccacacctggctttctacctttgtatactggc
ttcctgaccacttctactcccagctgctacacaactctccccttcataga
ttgtgtgagctcagggggccttgttgatcaggtccaacagaggaccaccc
cccaaaaatctccaaactgcagcctcccagatgtggacatctgtcttctc
ccattcagcactcaggagaagaaacaggacacgtatctaatttagggaca
agaaattctcactcccaagttagggctggaccttcaggagataggaaaga
ggtctctgatatagggtcagctcatatggaggtcaccaggggcggcaggg
gggagggctgtggggaacaatctctttgccccgggctacttcagggtcaa
tcatttgccactgatttcaaaggacacacaagatttgccggacaccacat
taatttgacatgagagggtcttttgcctccagaactcctggtttggaatt
ctgttcccttttctaatctggatgacggtagatctctaatcccttgtgcc
atgcctgaacttcaaccagatcatctgcaccaccagtgtaggactcagct
gagagcagggcctgggtctgggctgggttttagaagaaaataatggactc
ctgcggaggtggtgaatagaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70518530_70518973
seq2: B6Ng01-015F09.b_35_479

seq1  GAATTCTAGAGAGTAGACTACAAGATT-CAGAGAGAAGGTTAATTCAGAG  49
      ||||||||||||||||||||||||||| |    |||||||||||||||||
seq2  GAATTCTAGAGAGTAGACTACAAGATTCCCCTTAGAAGGTTAATTCAGAG  50

seq1  TTAAGGTTGGATTAGAAAGGATAATGTTGGGTGATGAGGAAGGACAGAGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTGGATTAGAAAGGATAATGTTGGGTGATGAGGAAGGACAGAGT  100

seq1  CTAGGTAAAGGACACTTAGTTACAAAGTAATTGTTTTTCTAGTTTTAACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAAAGGACACTTAGTTACAAAGTAATTGTTTTTCTAGTTTTAACT  150

seq1  CTGTCATAGATTTTCTTTCCTTTCTTTTTGTAGATAAGTGCATACAATGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATAGATTTTCTTTCCTTTCTTTTTGTAGATAAGTGCATACAATGT  200

seq1  TTAAAAGTCGATTTTTTTTTTTTTTTTTTTTTTTGGAAACATGGTTTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTCGATTTTTTTTTTTTTTTTTTTTTTTGGAAACATGGTTTCTT  250

seq1  TGTATAGTTCTGGTTGTCCCTGAACTTGTTCTGTAGACCAGGTTGGCCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTTCTGGTTGTCCCTGAACTTGTTCTGTAGACCAGGTTGGCCTG  300

seq1  GAACTCACAGAGATCCACTTGCCTCTGCCTCCTGAATGCTGGGATTAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACAGAGATCCACTTGCCTCTGCCTCCTGAATGCTGGGATTAAAG  350

seq1  GTGGGTGCCACCACTGCCCAGCAAGTGGATAAAATATAATTGATAGTATA  399
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  GTGGGTGCCACCACTGCCCAGCAAGTGGATAAAATATAATTGAAAATATA  400

seq1  TAAGCCAAAGCAAAGGTCAACAGCTTTAAAATGGCTACTCTAATT  444
      |||||| |||||||||| ||||| |||||||||||||||||||||
seq2  TAAGCCTAAGCAAAGGTTAACAGTTTTAAAATGGCTACTCTAATT  445

seq1: chr9_70655932_70656913
seq2: B6Ng01-015F09.g_70_1043 (reverse)

seq1  CTTTTCTATCACCCACCTCCGCAGAGAGTTCCATTTGTTTTCTTCTGAAA  50
      | |||||||   |||||||||||| ||| |||| || ||||||||| |||
seq2  CCTTTCTATTCACCACCTCCGCAG-GAG-TCCA-TTATTTTCTTCT-AAA  46

seq1  ACCCAGGCCAGACCCAGGCCCTGCTTCTCAGCTGAGTCCTACACTGGTGG  100
      |||||| ||||||||||||||||| ||||||||||||||||||||||| |
seq2  ACCCAGCCCAGACCCAGGCCCTGC-TCTCAGCTGAGTCCTACACTGGT-G  94

seq1  GTGCAGATGATCTGGTTGAAGTTCAGGCATGGCACAAGGGATTAGAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATGATCTGGTTGAAGTTCAGGCATGGCACAAGGGATTAGAGATC  144

seq1  TACCGTCATCCAGATTAGAAAAGGGAAACAGAATTCCAAACCAGGAGTTC  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACCGTCATCCAGATTAGAAAAGGG-AACAGAATTCCAAACCAGGAGTTC  193

seq1  TGGAGGCAAAAGACCCTTCTCATGTC-AATTAATGTTGGTGTCCGGCAAA  249
      |||||||||||||||| ||||||||| |||||||| ||||||||||||||
seq2  TGGAGGCAAAAGACCC-TCTCATGTCAAATTAATG-TGGTGTCCGGCAAA  241

seq1  TCTTGTGTGTCCTTTGAAATCAGTGGCAAATGATTGACCCTGAAGTAGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTGTCCTTTGAAATCAGTGGCAAATGATTGACCCTGAAGTAGCC  291

seq1  CGGGGCAAAGAGATTGTTCCCCACAGCCCTCCCCCCTGCCGCCCCTGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCAAAGAGATTGTTCCCCACAGCCCTCCCCCCTGCCGCCCCTGGTG  341

seq1  ACCTCCATATGAGCTGACCCTATATCAGAGACCTCTTTCCTATCTCCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATATGAGCTGACCCTATATCAGAGACCTCTTTCCTATCTCCTGA  391

seq1  AGGTCCAGCCCTAACTTGGGAGTGAGAATTTCTTGTCCCTAAATTAGATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGCCCTAACTTGGGAGTGAGAATTTCTTGTCCCTAAATTAGATA  441

seq1  CGTGTCCTGTTTCTTCTCCTGAGTGCTGAATGGGAGAAGACAGATGTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTGTTTCTTCTCCTGAGTGCTGAATGGGAGAAGACAGATGTCCA  491

seq1  CATCTGGGAGGCTGCAGTTTGGAGATTTTTGGGGGGTGGTCCTCTGTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGAGGCTGCAGTTTGGAGATTTTTGGGGGGTGGTCCTCTGTTGG  541

seq1  ACCTGATCAACAAGGCCCCCTGAGCTCACACAATCTATGAAGGGGAGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCAACAAGGCCCCCTGAGCTCACACAATCTATGAAGGGGAGAGT  591

seq1  TGTGTAGCAGCTGGGAGTAGAAGTGGTCAGGAAGCCAGTATACAAAGGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCAGCTGGGAGTAGAAGTGGTCAGGAAGCCAGTATACAAAGGTA  641

seq1  GAAAGCCAGGTGTGGTGGCACACAGCTGCAATCCCAGACCTTGAAAGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAGGTGTGGTGGCACACAGCTGCAATCCCAGACCTTGAAAGGCA  691

seq1  GAGGCAGAAGGACCGCCACAAGTTTGAGGCCAGCTTAGGATTCATCGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAAGGACCGCCACAAGTTTGAGGCCAGCTTAGGATTCATCGTGA  741

seq1  GGTCCTGTCCTAAAAGTTCAAAATAGTTAAAATGATCTAATGGAATGATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGTCCTAAAAGTTCAAAATAGTTAAAATGATCTAATGGAATGATA  791

seq1  ACAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTG  841

seq1  GGTGGGGGTGGCCATTCCTCCCGATGTTGAGACCACTGGTATTCACAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGGCCATTCCTCCCGATGTTGAGACCACTGGTATTCACAGAG  891

seq1  CACTCCTGCAGACCCCACGTCTGCACTGGAGCTCCGCATGAGTGCAGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGCAGACCCCACGTCTGCACTGGAGCTCCGCATGAGTGCAGGCA  941

seq1  CTTTTTTGGAGAATCTTGACGTGAAATGAATTC  982
      |||||||||||||||||||||||||||||||||
seq2  CTTTTTTGGAGAATCTTGACGTGAAATGAATTC  974