BAC Information

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BAC

Clone NameB6Ng01-015F20
Chromosome9 (Build37)
Map Location 44,586,473 - 44,731,147
singlet/doubletdoublet
Overlap gene1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l
Upstream genePvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1
Downstream geneUbe4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015F20.bB6Ng01-015F20.g
ACCDH849641DH849642
length1,142707
definitionDH849641|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F20, 5' end.DH849642|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,730,002 - 44,731,147)(44,586,473 - 44,587,178)
sequence
gaattcccactactggtgacagagaattgaagggcaaggctacctagtga
gttcaaagccagtccatgtatctcatcaagacatttcaaaggaaagtctg
gtagagcttgcctagcacatacattgctaaatccaatcccagtaccacta
ccacttaaagaaaagatgagtgacagtttcacaagtccttctgaaaacct
agtgggttttgccagtttctcaaaggcagggtgccagcaaatgtgtatca
cctggctgacctaacgcctcactaaagaccttcagagcagtgcttctctg
tgagttacctaataccatcataaaacacacatttacagttcacaacagca
gcaacattaccttatgaaggagcaacaaaaaatcgtttcatggctggggt
catcataacatgaggaactgtattaaagggtggcagcgttaggaaggttg
agagccactgctctagaggtaccctccggctgtcttcgggagaaagtctt
aagagcttagactctaattaggtcctttatggcttcactatccaacctaa
ataacagaccttttaatactttgccaccatgtccttattctattcccaca
cctgtggcatgcaggatctcagcttaggttaatttaaccattaccctctg
ctacctaaactacaggcaaatgtacagcccacataccagacgactccacc
actgccccttctctgctcgtctctgtgtccttcagacactctgaaatgta
gccttgctcaccactcccttttcagacaggtgggatgtgtcagactcctc
attgggaacttttctcccctcacccggttaagggaagaggtcccatcttt
cccaaacaaactccttctgcgtctttgctggctcccatgtcctggactcc
tgaagctccacctttcctctgggtggtctgactataattctctggcttcc
atattcttcatgctgcaatctggtttctaagggttggaaaccttttctag
ttatggtccagatgtcatactcatattgagctgggcctgtcttaccctcg
gtccgactggcctggaacttccaatctcgggcttctgatgcctggatata
tgggggcttcaggtatcttttcggctttatttgacttcactg
gaattccattatatccagggctacataaagaaaccctgccttgaaaaact
ggggggagaaaaaaagaaaaccaaaaataagtaaattaaataaaaataaa
aaggtgcaaacatatttgttttttttaaacaataatttaaacttcccctc
atgaaaagattcttcctctgaggccctcctttttctgccgctcttcccaa
caagacgatggctgataacacctgtgacgagtactaggaggacattcagg
tgcgtgcgctgtgaccctcaccttccgctgacccggctctgggtgtggtc
agtgtgagaaggctctgaatccgttgaacctctagtgcctgagtaccttt
gggctcctgtaggaaagtcaagactggagtcttgagatgatggcatcttc
aagaatgaagcctgctgttgatattttctgtcagatgctaactatcctag
ctagaatgtcacattcgctagcgagcccgtccctgacacaaactgtcatt
aatgctggctcttagtgaggagcttcatctaaaatgtaacagggctgtag
actttattgattatgagaatcaactaggatgtttgctcttaaaaaaaaag
atgccttgggagggagagatgggtctatgactacccagcatctgattgca
cttctgtatcacctggtgtaaaatcacaccccgcccatgacagctcacac
tgtaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44730002_44731147
seq2: B6Ng01-015F20.b_42_1183 (reverse)

seq1  CAGTGAAGTCAAATTAAAGCAGGAAAGATAACCTGAAACCCACAT-TATA  49
      ||||||||||||| |||||| | |||||| ||||||| ||| ||| ||| 
seq2  CAGTGAAGTCAAA-TAAAGCCGAAAAGAT-ACCTGAAGCCCCCATATATC  48

seq1  CCAGCATACAGGAGCCTGAAGATTGGAAGTTACAGGCCAGTCTGGACCGA  99
      |  |||| ||| |||| | |||||||||||| |||||||||| |||||||
seq2  CAGGCAT-CAGAAGCCCG-AGATTGGAAGTTCCAGGCCAGTC-GGACCGA  95

seq1  -GGTAAGACAGG-CCAGCTAATTATGAGTATGAACATCTGTGACATTAAC  147
       ||||||||||| |||||| | |||||||||| ||||||| |||  ||||
seq2  GGGTAAGACAGGCCCAGCTCAATATGAGTATG-ACATCTG-GACCATAAC  143

seq1  TAGAAAAGGTTTCAAACCCTTAGAAACCAGATTGCAGCAATGAAGAAATA  197
      ||||||||||||| |||||||||||||||||||||||| |||||| ||||
seq2  TAGAAAAGGTTTCCAACCCTTAGAAACCAGATTGCAGC-ATGAAG-AATA  191

seq1  TGGAAGCAAGAGAATATAAGTCAGACAACCCAAGAGG-AAGGTGGAGC-T  245
      ||||||| |||||||   |||||||| |||| ||||| |||||||||| |
seq2  TGGAAGCCAGAGAATTATAGTCAGACCACCC-AGAGGAAAGGTGGAGCTT  240

seq1  CAGGAGTCCAGGACA-GGGAGACAGCAAAGAAGGCAG-AGGAGTTTGTTT  293
      ||||||||||||||| ||||| |||||||| | |||| ||||||||||||
seq2  CAGGAGTCCAGGACATGGGAGCCAGCAAAG-ACGCAGAAGGAGTTTGTTT  289

seq1  GGGAATGGTGGGACCTCTTCCTTAAACGGGGTGAAGGGAGAAAAGTTTCC  343
      ||||| | ||||||||||||| | ||| |||||| |||||||||||| ||
seq2  GGGAAAGATGGGACCTCTTCCCTTAACCGGGTGAGGGGAGAAAAGTTCCC  339

seq1  AAGTGAGGAGTCTGACACATGCCACCTGTGTGAAAAGGGAGTGGTGAGCA  393
      || ||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  AA-TGAGGAGTCTGACACATCCCACCTGTCTGAAAAGGGAGTGGTGAGCA  388

seq1  AGGCTACATTTCAGAGTGTCTGAAGGACACAGAGAAGAGCAGAGAA-GGG  442
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AGGCTACATTTCAGAGTGTCTGAAGGACACAGAGACGAGCAGAGAAGGGG  438

seq1  CAGTGGTGGAGTCGACTGGTCTGTGGGCTGTACAGTTGCCTGTAGTTTAG  492
      |||||||||||||| ||||| ||||||||||||| |||||||||||||||
seq2  CAGTGGTGGAGTCGTCTGGTATGTGGGCTGTACATTTGCCTGTAGTTTAG  488

seq1  GTAGCAGAGGGTAATGGTTAAATTAACCTAAGCTGAGATCCTGCATGCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAGGGTAATGGTTAAATTAACCTAAGCTGAGATCCTGCATGCCA  538

seq1  CAGGTATGGGAATAGAATAAGGACATGGTGGCAAAGTATTAAAAGGTCTG  592
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGGGAATAGAATAAGGACATGGTGGCAAAGTATTAAAAGGTCTG  588

seq1  TTATTTAGGTTGGATAGTGAAGCCATAAAGGAACTAATTAGAGTCTAAGC  642
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTATTTAGGTTGGATAGTGAAGCCATAAAGGACCTAATTAGAGTCTAAGC  638

seq1  TCTTAAGACTTTCTCCCGAAGACAGCCGGAGGGTACCTCTAGAGCAGTGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGACTTTCTCCCGAAGACAGCCGGAGGGTACCTCTAGAGCAGTGG  688

seq1  CTCTCAACCTTCCTAACGCTGCCACCCTTTAATACAGTTCCTCATGTTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAACCTTCCTAACGCTGCCACCCTTTAATACAGTTCCTCATGTTAT  738

seq1  GATGACCCCAGCCATGAAACGATTTTTTGTTGCTCCTTCATAATGTAATG  792
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATGACCCCAGCCATGAAACGATTTTTTGTTGCTCCTTCATAAGGTAATG  788

seq1  TTGCTGCTGTTGTGAACTGTAAATGTGTGTTTTCTGATGGTCTTAGGTAA  842
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TTGCTGCTGTTGTGAACTGTAAATGTGTGTTTTATGATGGTATTAGGTAA  838

seq1  CTCACAGAGAAGCACTGCTCTGAAGGTCTTTAGTGAGGCGTTAGGTCAGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAGAAGCACTGCTCTGAAGGTCTTTAGTGAGGCGTTAGGTCAGC  888

seq1  CAGGTGATACACATTTGCTGGCACCCTGCCTTTGAGAAACTGGCAAAACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATACACATTTGCTGGCACCCTGCCTTTGAGAAACTGGCAAAACC  938

seq1  CACTAGGTTTTCAGAAGGACTTGTGAAACTGTCACTCATCTTTTCTTTCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CACTAGGTTTTCAGAAGGACTTGTGAAACTGTCACTCATCTTTTCTTTAA  988

seq1  GTGGTAGTGGTACTGGGATTGGATTTAGCAATGTATGTGCTAGGCAAGCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTGGTACTGGGATTGGATTTAGCAATGTATGTGCTAGGCAAGCT  1038

seq1  CTACCAGACTTTCCTTTGAAATGTCTTGATGAGATGCCTGGACTGGCTTT  1092
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  CTACCAGACTTTCCTTTGAAATGTCTTGATGAGATACATGGACTGGCTTT  1088

seq1  GAACTCACTAGGTAGCCTTGCCCTTCAATTCTCTGTCACCAGTAGTGGGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTAGGTAGCCTTGCCCTTCAATTCTCTGTCACCAGTAGTGGGA  1138

seq1  ATTC  1146
      ||||
seq2  ATTC  1142

seq1: chr9_44586473_44587178
seq2: B6Ng01-015F20.g_67_773

seq1  GAATTCCATTATAGCCAGGGCTACATAAAGAAACCCTGCCTTGAAAAACT  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTATATCCAGGGCTACATAAAGAAACCCTGCCTTGAAAAACT  50

seq1  GGGGGGAGAAAAAAGGAAAACCAAAAATAAGTAAATTAAATAAAAATAAA  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGAAAAAAAGAAAACCAAAAATAAGTAAATTAAATAAAAATAAA  100

seq1  AAGGTGCAAACATATTTGTTTTTTTTAAACAATAATTTAAACATCAACTA  150
      |||||||||||||||||||||||||||||||||||||||||| ||  || 
seq2  AAGGTGCAAACATATTTGTTTTTTTTAAACAATAATTTAAACTTCCCCTC  150

seq1  ATGAAAAGATTCTTCCTCTAAGGCCCTCCTTTTTCTGCCGCTCTTCCCAA  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGAAAAGATTCTTCCTCTGAGGCCCTCCTTTTTCTGCCGCTCTTCCCAA  200

seq1  CAAGACGATGGCTGATAACAGCAGTGACGAGTACGAGGAGGACAATAAGG  250
      |||||||||||||||||||| | ||||||||||| ||||||||| | |||
seq2  CAAGACGATGGCTGATAACACCTGTGACGAGTACTAGGAGGACATTCAGG  250

seq1  TGCGTGCGCTGTGACCCTCAGCTTCCGCTGACCCGGCTCTGGGTGTGGTC  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCGTGCGCTGTGACCCTCACCTTCCGCTGACCCGGCTCTGGGTGTGGTC  300

seq1  AGTGTGAGAAGGCTCTGAGTCCGCAGGAACCTCTAGTGCCTGAGTACCTT  350
      |||||||||||||||||| ||||   ||||||||||||||||||||||||
seq2  AGTGTGAGAAGGCTCTGAATCCG-TTGAACCTCTAGTGCCTGAGTACCTT  349

seq1  TGGGCTCCTGTAGGAAAGTCAAGAGTAGAGTCTTGAGATGATGGCATCTT  400
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  TGGGCTCCTGTAGGAAAGTCAAGACTGGAGTCTTGAGATGATGGCATCTT  399

seq1  CAGGAATGAAGCCTGCTGTTGTTATTTTCTGTCAGATGCTAGCTATCAAA  450
      || |||||||||||||||||| ||||||||||||||||||| |||||  |
seq2  CAAGAATGAAGCCTGCTGTTGATATTTTCTGTCAGATGCTAACTATCCTA  449

seq1  GCTAGAATGTCACATTCACTAGCGAGCCCGTCCCTGACACAGACTGTCAT  500
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  GCTAGAATGTCACATTCGCTAGCGAGCCCGTCCCTGACACAAACTGTCAT  499

seq1  TAATGCTGGCTCTTAGTGAGGAGCTTCATCTAAAATGTAACAGTGCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAATGCTGGCTCTTAGTGAGGAGCTTCATCTAAAATGTAACAGGGCTGTA  549

seq1  GACTTTATTGATTATGAGAATCAACTAGGATGTTTGCTCTT-AAAAATAA  599
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GACTTTATTGATTATGAGAATCAACTAGGATGTTTGCTCTTAAAAAAAAA  599

seq1  GATGCCTTGGGCTGGAGAGATGGCTCCATGACTA-AGAGCAACTGCTTGC  648
      |||||||||||  |||||||||| || |||||||   |||| ||| ||||
seq2  GATGCCTTGGGAGGGAGAGATGGGTCTATGACTACCCAGCATCTGATTGC  649

seq1  TCTTCTAGAGGACCTGGGTTCAATTCCCAGCCCACAAATGACAGCTCACA  698
       |||||  |  ||||||  | || || || ||| |  |||||||||||||
seq2  ACTTCTGTATCACCTGGTGTAAAATCACACCCCGCCCATGACAGCTCACA  699

seq1  CTGTAACT  706
      ||||||||
seq2  CTGTAACT  707