BAC Information

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BAC

Clone NameB6Ng01-015G16
Chromosome9 (Build37)
Map Location 43,227,783 - 43,375,080
singlet/doubletdoublet
Overlap genenone
Upstream geneTbcel, Grik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Downstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015G16.bB6Ng01-015G16.g
ACCDH849680DH849681
length1,068580
definitionDH849680|Mus musculus domesticus DNA, BAC clone: B6Ng01-015G16, 5' end.DH849681|Mus musculus domesticus DNA, BAC clone: B6Ng01-015G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,374,006 - 43,375,080)(43,227,783 - 43,228,362)
sequence
gaattcctcatccagaccacagcacaagcatggggcatagctcaaactgg
ggacaagctacagggggcaaatatcaccataaccgaacaaaccaagaaca
ctgatgctcggttagaaggggaaaggctgcttacaggccagtcagcttcc
ttacttgtggtaggcctaggtctctggatgctcaagacagctctgggcag
tggtggcacatgcctgtaatcctagcacttgggaggctgaggcaggcaga
tttctgagttcaaggccagcctggtctacagaatgagttccaggacagcc
agggctctacagagaaaccctgtcttgagaaaaacaaaaacaaaaacaaa
caaacaaaaaaaccagctttgaacttgcttgaacactcactgtgtgttca
gcccaagagaccaggaagcacgcaggagcagagtggcagacaccgagctc
aggagcctgtgttgtgatctgtgttgagtctcctcatctaagtggctact
tgcgccctttttccttgttctcttttctgagtcctctccctttcccatca
cactgagccacttcagaatgtctctcaaaggaatctcaagaagctggctg
ggtctctgtggagtacatcgtattatcttattacgaactcgcctggtgat
ggggttccgttagctgactctctttattagcagccaaagacaaacttatg
aaatacctttaaacctggatttccttaacaatctatcattggggagctga
cagctttcattcgcttccctgtgccagaaagaattaagattgttcctaat
ttaatctctcttccgcatcgcaggcggatatttgtgtttcagagcaaact
tgcgttaaggctctgggggacggaggcttcggattgtcaaagatctccct
acagtgccccacgcacttccttgcagacagggctggccatgactgccaga
atctagccagaagaggcccagacgctgcactgatggggcccagtcatggg
cctgctgaggcaaatgtttgtaagggttctctgttccaaccatcttgagg
gaaataattcagtcaaga
gaattctgctgttgctgctgctgctgctgctgctgctgctgctgctgctg
ctgctgctgctactgctgctgctggtgtgtatgtgtgatcctcacagaaa
tatggcagaacacgttccaatatcttccaagacagaacaggagggaatgg
tggagattgcaagagcctttgtgaggtctctgggcaatttttaattcaaa
accagtggcaacattggtttgcctgtctggggtagaggagactctaagca
ggtgaaccatccagtattcaaaagatgggaaaggtatcaaaggctccaga
ataaaactggaggtcgggtgagataagaacagggagcgaaaaggctttac
gtttcccaagaactccgggaaatcatgataggagtcagcctctgctcaga
gcattgtggacaggcgtttcagtcccagcctgtctctgttctgagagctg
agcctacctcgaggggggtgggggaaatctcccggcaggcatctgtactt
ttgcgagcagcttaataggatttcagtggatcgcaagtagggatcaggac
cgctgcctctggggggagtttggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43374006_43375080
seq2: B6Ng01-015G16.b_44_1111 (reverse)

seq1  TCTTGACTGAATTATTTTCCTC-AGATAGATACGAACAGAGAAACCCTTA  49
      ||||||||||||||||| |||| |||| | |  |||||||| ||||||||
seq2  TCTTGACTGAATTATTTCCCTCAAGAT-GGTTGGAACAGAG-AACCCTTA  48

seq1  C-AACATCTGCCTCAGCAGGGCCACTGACCTGTGGCCCCATCAGTGGCAG  98
      | ||||| |||||||||||| ||| ||| ||| |||||||||||| ||||
seq2  CAAACATTTGCCTCAGCAGGCCCA-TGA-CTG-GGCCCCATCAGT-GCAG  94

seq1  CGTCTGGGCCTCTTCTGGCTAGACTCCTGGCAGTCATGGCCAGCCCTGTC  148
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  CGTCTGGGCCTCTTCTGGCTAGA-TTCTGGCAGTCATGGCCAGCCCTGTC  143

seq1  TGCAAGGAAGTGCGTGGGGCACTCGTAGGGAGACTCTTTGACAATCCGAA  198
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TGCAAGGAAGTGCGTGGGGCACT-GTAGGGAGA-TCTTTGACAATCCGAA  191

seq1  GCCTCCGT-CCCCAGAGCCTTTAACGCAAGTTTGCTCTGAAACACAAATA  247
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  GCCTCCGTCCCCCAGAGCC-TTAACGCAAGTTTGCTCTGAAACACAAATA  240

seq1  TCCGCCTGCGATGCGGAAGAGAGATTAAATTAGGAACAATCTTAATTCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCTGCGATGCGGAAGAGAGATTAAATTAGGAACAATCTTAATTCTT  290

seq1  TCTGGCACAGGGAAGCGAATGAAAGCTGTCAGCTCCCCAATGATAGATTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACAGGGAAGCGAATGAAAGCTGTCAGCTCCCCAATGATAGATTG  340

seq1  TTAAGGAAATCCAGGTTTAAAGGTATTTCATAAGTTTGTCTTTGGCTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAATCCAGGTTTAAAGGTATTTCATAAGTTTGTCTTTGGCTGCT  390

seq1  AATAAAGAGAGTCAGCTAACGGAACCCCATCACCAGGCGAGTTCGTAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAGAGTCAGCTAACGGAACCCCATCACCAGGCGAGTTCGTAATA  440

seq1  AGATAATACGATGTACTCCACAGAGACCCAGCCAGCTTCTTGAGATTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATACGATGTACTCCACAGAGACCCAGCCAGCTTCTTGAGATTCCT  490

seq1  TTGAGAGACATTCTGAAGTGGCTCAGTGTGATGGGAAAGGGAGAGGACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGACATTCTGAAGTGGCTCAGTGTGATGGGAAAGGGAGAGGACTC  540

seq1  AGAAAAGAGAACAAGGAAAAAGGGCGCAAGTAGCCACTTAGATGAGGAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGAACAAGGAAAAAGGGCGCAAGTAGCCACTTAGATGAGGAGA  590

seq1  CTCAACACAGATCACAACACAGGCTCCTGAGCTCGGTGTCTGCCACTCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACAGATCACAACACAGGCTCCTGAGCTCGGTGTCTGCCACTCTG  640

seq1  CTCCTGCGTGCTTCCTGGTCTCTTGGGCTGAACACACAGTGAGTGTTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCGTGCTTCCTGGTCTCTTGGGCTGAACACACAGTGAGTGTTCAA  690

seq1  GCAAGTTCAAAGCTGGTTTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTCAAAGCTGGTTTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTC  740

seq1  TCAAGACAGGGTTTCTCTGTAGAGCCCTGGCTGTCCTGGAACTCATTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAGGGTTTCTCTGTAGAGCCCTGGCTGTCCTGGAACTCATTCTG  790

seq1  TAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCAGCCTCCCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCAGCCTCCCAA  840

seq1  GTGCTAGGATTACAGGCATGTGCCACCACTGCCCAGAGCTGTCTTGAGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGATTACAGGCATGTGCCACCACTGCCCAGAGCTGTCTTGAGCA  890

seq1  TCCAGAGACCTAGGCCTACCACAAGTAAGGAAGCTGACTGGCCTGTAAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGACCTAGGCCTACCACAAGTAAGGAAGCTGACTGGCCTGTAAGC  940

seq1  AGCCTTTCCCCTTCTAACCGAGCATCAGTGTTCTTGGTTTGTTCGGTTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCCCCTTCTAACCGAGCATCAGTGTTCTTGGTTTGTTCGGTTAT  990

seq1  GGTGATATTTGCCCCCTGTAGCTTGTCCCCAGTTTGAGCTATGCCCCATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATTTGCCCCCTGTAGCTTGTCCCCAGTTTGAGCTATGCCCCATG  1040

seq1  CTTGTGCTGTGGTCTGGATGAGGAATTC  1075
      ||||||||||||||||||||||||||||
seq2  CTTGTGCTGTGGTCTGGATGAGGAATTC  1068

seq1: chr9_43227783_43228362
seq2: B6Ng01-015G16.g_71_650

seq1  GAATTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG  50

seq1  CTGCTGCTGCTACTGCTGCTGCTGGTGTGTATGTGTGATCCTCACAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCTACTGCTGCTGCTGGTGTGTATGTGTGATCCTCACAGAAA  100

seq1  TATGGCAGAACACGTTCCAATATCTTCCAAGACAGAACAGGAGGGAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGAACACGTTCCAATATCTTCCAAGACAGAACAGGAGGGAATGG  150

seq1  TGGAGATTGCAAGAGCCTTTGTGAGGTCTCTGGGCAATTTTTAATTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATTGCAAGAGCCTTTGTGAGGTCTCTGGGCAATTTTTAATTCAAA  200

seq1  ACCAGTGGCAACATTGGTTTGCCTGTCTGGGGTAGAGGAGACTCTAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGCAACATTGGTTTGCCTGTCTGGGGTAGAGGAGACTCTAAGCA  250

seq1  GGTGAACCATCCAGTATTCAAAAGATGGGAAAGGTATCAAAGGCTCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACCATCCAGTATTCAAAAGATGGGAAAGGTATCAAAGGCTCCAGA  300

seq1  ATAAAACTGGAGGTCGGGTGAGATAAGAACAGGGAGCGAAAAGGCTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGGAGGTCGGGTGAGATAAGAACAGGGAGCGAAAAGGCTTTAC  350

seq1  GTTTCCCAAGAACTCCGGGAAATCATGATAGGAGTCAGCCTCTGCTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAAGAACTCCGGGAAATCATGATAGGAGTCAGCCTCTGCTCAGA  400

seq1  GCATTGTGGACAGGCGTTTCAGTCCCAGCCTGTCTCTGTTCTGAGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGGACAGGCGTTTCAGTCCCAGCCTGTCTCTGTTCTGAGAGCTG  450

seq1  AGCCTACCTCGAGGGGGGTGGGGGAAATCTCCCGGCAGGCATCTGTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACCTCGAGGGGGGTGGGGGAAATCTCCCGGCAGGCATCTGTACTT  500

seq1  TTGCGAGCAGCTTAATAGGATTTCAGTGGATCGCAAGTAGGGATCAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGAGCAGCTTAATAGGATTTCAGTGGATCGCAAGTAGGGATCAGGAC  550

seq1  CGCTGCCTCTGGGGGGAGTTTGGGGTGGGG  580
      ||||||||||||||||||||||||||||||
seq2  CGCTGCCTCTGGGGGGAGTTTGGGGTGGGG  580