BAC Information

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BAC

Clone NameB6Ng01-015H06
Chromosome9 (Build37)
Map Location 41,442,935 - 41,605,185
singlet/doubletdoublet
Overlap geneEG667566
Upstream gene9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464
Downstream gene6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015H06.bB6Ng01-015H06.g
ACCDH849708DH849709
length1,0791,016
definitionDH849708|Mus musculus domesticus DNA, BAC clone: B6Ng01-015H06, 5' end.DH849709|Mus musculus domesticus DNA, BAC clone: B6Ng01-015H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,442,935 - 41,444,418)(41,604,176 - 41,605,185)
sequence
gaattcatcactctttcctccagttgaaaacttgtatgaagacttatgtt
tttttttcacatggtgtaacatccaatatctttgcttccatacttgatcc
tctggaaatgcttccttttgtctttctgttctttaaatacattcattaga
atgagtatgtagaccttctcatgctcagaacttgagaaataaggggtagg
atagggtcatctttttttttctaagtgaacagtgaacaggttttctcata
tttcccaagttcttttctcggcattcaatatatgagtccttccatccttt
cactcttcccccttccttccttcctattttatcatgcttatcatatcaaa
attgatgctcataagcatttcttaacacaaacattcccttctgtgtgttg
tcaagttttgtgcactactaagtaaaagtgctcatatcagacctcactta
aataagaatttctagcacaggccaccatacagttcaagcacaaacaaatc
cccaaacgaaaataagaaagcaggagctctttccttcatcccaacgtgta
agggagtatccctgtggtctgcaagtttgagtgggattggacaggaaggt
cggggcaggatctatgcaatgggaaagaggcctaatcaacttactgtttc
cacaaaggctaatgggtagaaatagggcttgcctgaatcttgcatttata
taggtacagaattaagctagcagaaatggacaactgcattgcctgttgtg
ttggggcatcttcattgagtttcatttatccttgccgcagagaaaagtcc
ataggctccatgggaaaggttgggaatgtcctaattgtagcagaaacata
ggatcatctgatcttataaccatgtctaatagagctggggttatcatttg
ttgtcaccatcaacagcttttttctctagatgcatggcatagagcctttc
acccccatggaaattttttttctttaaatgtttgtgattatctataccag
caatcaaatatcgattgagttaatcttttaagcatcatcaacatgctggc
atgcattatacgaacatcaatgttggaaa
gaattctctttgctctgaccgacaaaaaaatacttctctaggaagtcttc
cagctttcccgacaatgggatagcatactgattctgtttctgtaatcaga
ctttattttgtctaagagttgacgtattctgggaaataaatatatctgag
cgttggggaaagatgaccaaaatagacagtgtttatagagctgagcgatc
gattcctggtagtaatgcaatctggaatacttgaaaccattagcaaaggg
gagtccacagtgagggcaaggtctattctgagctgtggagtgttaagctt
tttgaggctccagagcatcaccagaatagtttgtagtttgggcagagcca
aacccatcacctcaggatgaggagaagccctggggtcactcaatgccagt
gtgatcttctagaacagagatgatgaaggacaccgaggagatgacacagg
gtggtctaccacaggcatttctctttccatgaattcacttcagaattgag
tattaaggtaacagaagagaaattttcctccccacctccttggcccttca
gataatctttgattaaaagaaatgcacagctttatagttgacattgcttt
aacaaataccgagttaacacttaccatgtcacagacatgtcctgtattca
cagagttttacttgcattaactaacttaattctctgaataaactggtggt
gtggatactgttttcgtctgtggagactgagtcagagatgtcaattgtgt
tctacaacagagagagagggtaggatatgaacacatacaacctagatttt
ggattaagcagtaaacccatagtcagggcatctttgatcacaggatgggt
gttgaggttccagtacagggtgaggaactgtaccctataaaattcatcag
gatgactcagaaacctgtctgactttccaatcgttgccctgaccatctac
atgtcctcttgtttcaaagatctccttgtccaaattctatttgcccttta
aggctcagcttcaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41442935_41444418
seq2: B6Ng01-015H06.b_47_1125

seq1  GAATTCATCACTCTTTCCTCCAGTTGAAAACTTGTATGAAGACTTATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTCTTTCCTCCAGTTGAAAACTTGTATGAAGACTTATGTT  50

seq1  TTTTTTTCACATGGTGTAACATCCAATATCTTTGCTTCCATACTTGATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCACATGGTGTAACATCCAATATCTTTGCTTCCATACTTGATCC  100

seq1  TCTGGAAATGCTTCCTTTTGTCTTTCTGTTCTTTAAATACATTCATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATGCTTCCTTTTGTCTTTCTGTTCTTTAAATACATTCATTAGA  150

seq1  ATGAGTATGTAGACCTTCTCATGCTCAGAACTTGAGAAATAAGGGGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATGTAGACCTTCTCATGCTCAGAACTTGAGAAATAAGGGGTAGG  200

seq1  ATAGGGTCATCTTTTTTTTTCTAAGTGAACAGTGAACAGGTTTTCTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTCATCTTTTTTTTTCTAAGTGAACAGTGAACAGGTTTTCTCATA  250

seq1  TTTCCCAAGTTCTTTTCTCGGCATTCAATATATGAGTCCTTCCATCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGTTCTTTTCTCGGCATTCAATATATGAGTCCTTCCATCCTTT  300

seq1  CACTCTTCCCCCTTCCTTCCTTCCTATTTTATCATGCTTATCATATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCCCCCTTCCTTCCTTCCTATTTTATCATGCTTATCATATCAAA  350

seq1  ATTGATGCTCATAAGCATTTCTTAACACAAACATTCCCTTCTGTGTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCTCATAAGCATTTCTTAACACAAACATTCCCTTCTGTGTGTTG  400

seq1  TCAAGTTTTGTGCACTACTAAGTAAAAGTGCTCATATCAGACCTCACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTTGTGCACTACTAAGTAAAAGTGCTCATATCAGACCTCACTTA  450

seq1  AATAAGAATTTCTAGCACAGGCCACCATACAGTTCAAGCACAAACAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATTTCTAGCACAGGCCACCATACAGTTCAAGCACAAACAAATC  500

seq1  CCCAAACGAAAATAAGAAAGCAGGAGCTCTTTCCTTCATCCCAACGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACGAAAATAAGAAAGCAGGAGCTCTTTCCTTCATCCCAACGTGTA  550

seq1  AGGGAGTATCCCTGTGGTCTGCAAGTTTGAGTGGGATTGGACAGGAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTATCCCTGTGGTCTGCAAGTTTGAGTGGGATTGGACAGGAAGGT  600

seq1  CGGGGCAGGATCTATGCAATGGGAAAGAGGCCTAATCAACTTACTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCAGGATCTATGCAATGGGAAAGAGGCCTAATCAACTTACTGTTTC  650

seq1  CACAAAGGCTAATGGGTAGAAATAGGGCTTGCCTGAATCTTGCATTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGCTAATGGGTAGAAATAGGGCTTGCCTGAATCTTGCATTTATA  700

seq1  TAGGTACAGAATTAAGCTAGCAGAAATGGACAACTGCATTGCCTGTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACAGAATTAAGCTAGCAGAAATGGACAACTGCATTGCCTGTTGTG  750

seq1  TTGGGGCATCTTCATTGAGTTTCATTTATCCTTGCCGCAGAGAAAAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCATCTTCATTGAGTTTCATTTATCCTTGCCGCAGAGAAAAGTCC  800

seq1  ATAGGCTCCATGGGAAAGGTT-GGAATGTCCTAAATTGTAGCAGAAACAT  849
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  ATAGGCTCCATGGGAAAGGTTGGGAATGTCCT-AATTGTAGCAGAAACAT  849

seq1  AGGATCATCTGATCTTATAACCATGTCTAATAGAGCTGGGG-TATCATTT  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGATCATCTGATCTTATAACCATGTCTAATAGAGCTGGGGTTATCATTT  899

seq1  G-TGTCACCATCAACAGC-TATTTCTCTAGGATGCATGGCATAGAGCCTT  946
      | |||||||||||||||| | |||||||| ||||||||||||||||||||
seq2  GTTGTCACCATCAACAGCTTTTTTCTCTA-GATGCATGGCATAGAGCCTT  948

seq1  TCACCCCCATGG-AATTTTTTTTCTTTAAATGTTTGTGATTATCTATACC  995
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCATGGAAATTTTTTTTCTTTAAATGTTTGTGATTATCTATACC  998

seq1  AGCAATCAAAATAATTGGATGGAAGTAAATCTTTTAGGCCATCATCAACA  1045
      ||||||| |||||  | ||| | ||| ||||||||| | |||||||||||
seq2  AGCAATC-AAATA--TCGATTG-AGTTAATCTTTTAAG-CATCATCAACA  1043

seq1  TGGCTGGCATGCATAATACCAAACAATCAAATGTTGGGAAAGCAAATGCA  1095
      | |||||||||||| |||| ||   ||| |||||||| ||          
seq2  T-GCTGGCATGCATTATACGAA--CATC-AATGTTGGAAA----------  1079

seq1  ACTGGCTGAGTTATTTAGAGCTATAAAAAGCAGCAGGTCAGAGTGCTCCT  1145
                                                        
seq2  --------------------------------------------------  1079

seq1  TCAGAGGATGGCGAGGACACACACAACTGAGTGTGAAAGAATTGGGAACT  1195
                                                        
seq2  --------------------------------------------------  1079

seq1  TAACAGTCACTCTTGTCTGTCAAGGCTCTACTTGGGGCTTCACTGCTTCC  1245
                                                        
seq2  --------------------------------------------------  1079

seq1  AAATGCACAGTTTGTCACTTCTCTCAGCTGTGACTACCCTTCACTCAGAG  1295
                                                        
seq2  --------------------------------------------------  1079

seq1  AAACATCCCATCAGAGATTGCATACAAGATCCAAGGATTCAGAACCACTT  1345
                                                        
seq2  --------------------------------------------------  1079

seq1  AGGTTATTGTAATGTCAAGCACGTCTCTTGGATTATATACATTTTAACTG  1395
                                                        
seq2  --------------------------------------------------  1079

seq1  ACTTGGTTTGCCCCTTGCTCATGTGTCTGGCAAACATCCAATCCTCCCGT  1445
                                                        
seq2  --------------------------------------------------  1079

seq1  TCATCTTCTATGACTATGCTCAAGCATAAATGTTGGAAA  1484
                                             
seq2  ---------------------------------------  1079

seq1: chr9_41604176_41605185
seq2: B6Ng01-015H06.g_68_1083 (reverse)

seq1  CTTTG-AGCTGAGCCTTAAAGGGCAAATAGAATTTGGAC-AGGAGATCTT  48
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTGAAGCTGAGCCTTAAAGGGCAAATAGAATTTGGACAAGGAGATCTT  50

seq1  TGAAAC-AGAGGACATTGTAGAAGGTCAGGGC-ACGATTGGAAAGTCAGA  96
      |||||| |||||||| |||||| ||||||||| |||||||||||||||||
seq2  TGAAACAAGAGGACA-TGTAGATGGTCAGGGCAACGATTGGAAAGTCAGA  99

seq1  CAGGTTTCTGAGTCAT-CTGATGATTTTTATA-GGTACAGTTCCTCACCC  144
      |||||||||||||||| ||||||| ||||||| |||||||||||||||||
seq2  CAGGTTTCTGAGTCATCCTGATGAATTTTATAGGGTACAGTTCCTCACCC  149

seq1  TGTACTGG-ACCTCAACACCCATCCTGTGATCAAAGATGCCTTGACTATG  193
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TGTACTGGAACCTCAACACCCATCCTGTGATCAAAGATGCCCTGACTATG  199

seq1  GGTTTACTGCTTAATCCAAAATCTAGGTTGTATGTGTTCATATCCTACCC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACTGCTTAATCCAAAATCTAGGTTGTATGTGTTCATATCCTACCC  249

seq1  TCTCTCTCTGTTGTAGAACACAATTGACATCTCTGACTCAGTCTCCACAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGTTGTAGAACACAATTGACATCTCTGACTCAGTCTCCACAG  299

seq1  ACGAAAACAGTATCCACACCACCAGTTTATTCAGAGAATTAAGTTAGTTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAACAGTATCCACACCACCAGTTTATTCAGAGAATTAAGTTAGTTA  349

seq1  ATGCAAGTAAAACTCTGTGAATACAGGACATGTCTGTGACATGGTAAGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGTAAAACTCTGTGAATACAGGACATGTCTGTGACATGGTAAGTG  399

seq1  TTAACTCGGTATTTGTTAAAGCAATGTCAACTATAAAGCTGTGCATTTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCGGTATTTGTTAAAGCAATGTCAACTATAAAGCTGTGCATTTCT  449

seq1  TTTAATCAAAGATTATCTGAAGGGCCAAGGAGGTGGGGAGGAAAATTTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAAAGATTATCTGAAGGGCCAAGGAGGTGGGGAGGAAAATTTCT  499

seq1  CTTCTGTTACCTTAATACTCAATTCTGAAGTGAATTCATGGAAAGAGAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTACCTTAATACTCAATTCTGAAGTGAATTCATGGAAAGAGAAA  549

seq1  TGCCTGTGGTAGACCACCCTGTGTCATCTCCTCGGTGTCCTTCATCATCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGGTAGACCACCCTGTGTCATCTCCTCGGTGTCCTTCATCATCT  599

seq1  CTGTTCTAGAAGATCACACTGGCATTGAGTGACCCCAGGGCTTCTCCTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTAGAAGATCACACTGGCATTGAGTGACCCCAGGGCTTCTCCTCA  649

seq1  TCCTGAGGTGATGGGTTTGGCTCTGCCCAAACTACAAACTATTCTGGTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGTGATGGGTTTGGCTCTGCCCAAACTACAAACTATTCTGGTGA  699

seq1  TGCTCTGGAGCCTCAAAAAGCTTAACACTCCACAGCTCAGAATAGACCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGAGCCTCAAAAAGCTTAACACTCCACAGCTCAGAATAGACCTT  749

seq1  GCCCTCACTGTGGACTCCCCTTTGCTAATGGTTTCAAGTATTCCAGATTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCACTGTGGACTCCCCTTTGCTAATGGTTTCAAGTATTCCAGATTG  799

seq1  CATTACTACCAGGAATCGATCGCTCAGCTCTATAAACACTGTCTATTTTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTACCAGGAATCGATCGCTCAGCTCTATAAACACTGTCTATTTTG  849

seq1  GTCATCTTTCCCCAACGCTCAGATATATTTATTTCCCAGAATACGTCAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTTCCCCAACGCTCAGATATATTTATTTCCCAGAATACGTCAAC  899

seq1  TCTTAGACAAAATAAAGTCTGATTACAGAAACAGAATCAGTATGCTATCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGACAAAATAAAGTCTGATTACAGAAACAGAATCAGTATGCTATCC  949

seq1  CATTGTCGGGAAAGCTGGAAGACTTCCTAGAGAAGTATTTTTTTGTCGGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCGGGAAAGCTGGAAGACTTCCTAGAGAAGTATTTTTTTGTCGGT  999

seq1  CAGAGCAAAGAGAATTC  1010
      |||||||||||||||||
seq2  CAGAGCAAAGAGAATTC  1016