BAC Information

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BAC

Clone NameB6Ng01-015L21
Chromosome9 (Build37)
Map Location 76,277,581 - 76,376,552
singlet/doubletdoublet
Overlap geneC530008M07Rik
Upstream geneLeo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015L21.bB6Ng01-015L21.g
ACCDH849917DH849918
length1,1511,108
definitionDH849917|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L21, 5' end.DH849918|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,375,381 - 76,376,552)(76,277,581 - 76,278,690)
sequence
gaattcttactggccagaaagaataaagcactgtccacaatctctgttca
tgtctggaagcttctatacattcacactggaatgtcccaaagatcctaaa
cttaatacatcttcaactgagctacaaacctctacttcctaactagagat
tagatttgttttctcagtaaggtaatgttattatcatctaaccacacatt
caaattactaaccatgaagtcatttgttcaatgtctttctctccccttta
tctttccataacctcatgcgaaattttctcaagagtaattaattctatca
ctcacatatatctaattggttctgtgttcactgttcttatcgctgaagtt
gttagtgtaagatctggacctagtacccctaaaaaagtaagttcagtcac
tgcctcagtatatcaattaaaaagactagtatagtgaaaatcatagaggg
gtgatttatttaatgtagccacactaaggaaaggaaccgaatacagatgc
tattcttttatctatgagaactgtagctcttggcttgtttgatttcttct
acagcccagaaactctcaggtgattttgataagcacgtgctgccaagaag
tgcttgaggtagttgtcatgttttgagcttcatgacattcaagcacaaag
tacaaggacttgttaaacattatcaagtgtgtgtcctcatccagtactac
cagcagcacacaagactcctgagaaatgcattctttgactatcacacacc
ttcaaattctaaaaccctgtggtggatcaccaaggctggcatcaccgttc
tgtatctcaaattcttgagaatcgaatgacgttaatcccaaagtattgtc
cccagccagcagaactgacaccacccagaaacttgtagcctagctggccc
tgtacttactatgtagcctacaatggccttgaacttctatgctctcctct
gagtgctgtgattttacagctggcagtgttaaacaagattcatgaaattg
aaaccgctgtgagtccattgtagctacacagcagatcatgcctcaaagct
tcaattgcgtgttctgccctctcctgacatgaacaagacatcagtagcct
cttagaggtccaaagaagaaatactgtgggggctcagaacctcaaacaag
g
gaattcagcatagtgacacactattggcttattcaaacatcaacagaaaa
attacatgtacgtgcagaatgtcagagttctgtgagttgttgactcagtt
cagatagccctgttatgtcctcacattcctctttatctttctggtcaaga
tgttcgaaggaatgttttaactacggggcatacccgggtttggttttttc
cctttctcagtcccaggcagcctctaggctcacaaacaaccagcaatttc
tgagtactttaaatgacttacaggtcttgaaatttcatctttcacttcaa
aacagaggaaaggtaatgacccctgaatgacatgttcagacatgttgagg
ttcaggtttaccaaggcaacattttagtgtagctctttactaggagctga
catctagtcagagaattttaggggaaactcttacctcttagaatttgtta
cattttattagcttggaaatgaaagtggttgctgatgaagttggaaaaag
aaattattgaaagactcagtgaattagactagagaactatgttgttcaag
cactagaaattttaggaaatgctgtctcaatgtatttgaagagataaagg
tcatattagaggcagtaggtgagaaatcactaagtgatctggccatatat
ttgcatgggtgaaatttgatcatgcccagtgaaggggagatagaaacctg
tagagaccaccttcagtagataggcatggctcccagtcgagggatggggc
cacccacccatctcagtttttaaacccagaaatgttcctatccaaaggaa
agacagggacaaaacatggaaaaaagactgaagaaagggccatccagaga
ctgccccacctggtgatccatcctgtctccagacaccaaaccccaacact
tgctattgtcaagagtgcttgctgacagggaactaactggtgtggctgtt
cctcggaaggttctgccaggaactgaccaatgcagacagggatgcttgag
ccaacatcagactgagctcaggaccctggtggggggagctggctgaaggc
ttggaggagccaagggatttcaaccctgtaggaagaaacattgtcagctg
gactggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76375381_76376552
seq2: B6Ng01-015L21.b_43_1193 (reverse)

seq1  CCTTGGTTTGAAG-TCTGAG-CCCCACAGTGAATTC-TCTTGGGAGCCCT  47
      |||| |||||| | |||||| ||||||||| | ||| |||| |||  |||
seq2  CCTT-GTTTGAGGTTCTGAGCCCCCACAGT-ATTTCTTCTTTGGA--CCT  46

seq1  CTAAGAGGCTACTTGATGTCTTGTTCATGGTCAGGGAGAGGGCAGACACT  97
      |||||||||||| ||||||||||||||| |||| |||||||||||| || 
seq2  CTAAGAGGCTAC-TGATGTCTTGTTCAT-GTCA-GGAGAGGGCAGA-ACA  92

seq1  GGCAATTTTAAAAGCTTTGA-GCATGATCCTGCTGTGTAGCTACAATGGG  146
       ||||||    ||||||||| ||||||| |||||||||||||||||| ||
seq2  CGCAATT---GAAGCTTTGAGGCATGAT-CTGCTGTGTAGCTACAAT-GG  137

seq1  ACTCACAGCGGTTTCCAAATTTCATGAAAATCTTGTTTAAACACTGGCCA  196
      |||||||||||||||  |||||||||  |||||||||| |||||| ||||
seq2  ACTCACAGCGGTTTC--AATTTCATG--AATCTTGTTT-AACACT-GCCA  181

seq1  GCTGGTAAAAATCACAGCACTCAAGAGGGAGAAGCATAAGAAGTTCAAGG  246
      ||||   ||||||||||||||| ||| |||| ||||| ||||||||||||
seq2  GCTG--TAAAATCACAGCACTC-AGA-GGAG-AGCAT-AGAAGTTCAAGG  225

seq1  CCATTGTAGGCTACATAGTAAGTACAGGGCCAGCCTAGGCTACAAGTTTC  296
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATTGTAGGCTACATAGTAAGTACAGGGCCAG-CTAGGCTACAAGTTTC  274

seq1  TGGGTGGTGTCAGTTCTGCTGGCTGGGGACAATACTTT-GGATTAACGTC  345
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGTGGTGTCAGTTCTGCTGGCTGGGGACAATACTTTGGGATTAACGTC  324

seq1  ATTCGATTCTCAAGAATTTGAGATACAGAACGGTGATGCCAGCCTTGGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGATTCTCAAGAATTTGAGATACAGAACGGTGATGCCAGCCTTGGTG  374

seq1  ATCCACCACAGGGTTTTAGAATTTGAAGGTGTGTGATAGTCAAAGAATGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCACAGGGTTTTAGAATTTGAAGGTGTGTGATAGTCAAAGAATGC  424

seq1  ATTTCTCAGGAGTCTTGTGTGCTGCTGGTAGTACTGGATGAGGACACACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAGGAGTCTTGTGTGCTGCTGGTAGTACTGGATGAGGACACACA  474

seq1  CTTGATAATGTTTAACAAGTCCTTGTACTTTGTGCTTGAATGTCATGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAATGTTTAACAAGTCCTTGTACTTTGTGCTTGAATGTCATGAAG  524

seq1  CTCAAAACATGACAACTACCTCAAGCACTTCTTGGCAGCACGTGCTTATC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACATGACAACTACCTCAAGCACTTCTTGGCAGCACGTGCTTATC  574

seq1  AAAATCACCTGAGAGTTTCTGGGCTGTAGAAGAAATCAAACAAGCCAAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACCTGAGAGTTTCTGGGCTGTAGAAGAAATCAAACAAGCCAAGA  624

seq1  GCTACAGTTCTCATAGATAAAAGAATAGCATCTGTATTCGGTTCCTTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTCTCATAGATAAAAGAATAGCATCTGTATTCGGTTCCTTTCC  674

seq1  TTAGTGTGGCTACATTAAATAAATCACCCCTCTATGATTTTCACTATACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGGCTACATTAAATAAATCACCCCTCTATGATTTTCACTATACT  724

seq1  AGTCTTTTTAATTGATATACTGAGGCAGTGACTGAACTTACTTTTTTAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTTAATTGATATACTGAGGCAGTGACTGAACTTACTTTTTTAGG  774

seq1  GGTACTAGGTCCAGATCTTACACTAACAACTTCAGCGATAAGAACAGTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAGGTCCAGATCTTACACTAACAACTTCAGCGATAAGAACAGTGA  824

seq1  ACACAGAACCAATTAGATATATGTGAGTGATAGAATTAATTACTCTTGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAACCAATTAGATATATGTGAGTGATAGAATTAATTACTCTTGAG  874

seq1  AAAATTTCGCATGAGGTTATGGAAAGATAAAGGGGAGAGAAAGACATTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCGCATGAGGTTATGGAAAGATAAAGGGGAGAGAAAGACATTGA  924

seq1  ACAAATGACTTCATGGTTAGTAATTTGAATGTGTGGTTAGATGATAATAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGACTTCATGGTTAGTAATTTGAATGTGTGGTTAGATGATAATAA  974

seq1  CATTACCTTACTGAGAAAACAAATCTAATCTCTAGTTAGGAAGTAGAGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTTACTGAGAAAACAAATCTAATCTCTAGTTAGGAAGTAGAGGT  1024

seq1  TTGTAGCTCAGTTGAAGATGTATTAAGTTTAGGATCTTTGGGACATTCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTCAGTTGAAGATGTATTAAGTTTAGGATCTTTGGGACATTCCA  1074

seq1  GTGTGAATGTATAGAAGCTTCCAGACATGAACAGAGATTGTGGACAGTGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATGTATAGAAGCTTCCAGACATGAACAGAGATTGTGGACAGTGC  1124

seq1  TTTATTCTTTCTGGCCAGTAAGAATTC  1172
      |||||||||||||||||||||||||||
seq2  TTTATTCTTTCTGGCCAGTAAGAATTC  1151

seq1: chr9_76277581_76278690
seq2: B6Ng01-015L21.g_69_1176

seq1  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAACAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGTGACACACTATTGGCTTATTCAAACATCAACAGAAAA  50

seq1  ATTACATGTACGTGCAGAATGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACGTGCAGAATGTCAGAGTTCTGTGAGTTGTTGACTCAGTT  100

seq1  CAGATAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTCTGGTCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTCTGGTCAAGA  150

seq1  TGTTCGAAGGAATGTTTTAACTACGGGGCATACCCGGGTTTGGTTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGAAGGAATGTTTTAACTACGGGGCATACCCGGGTTTGGTTTTTTC  200

seq1  CCTTTCTCAGTCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCAGTCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTC  250

seq1  TGAGTACTTTAAATGACTTACAGGTCTTGAAATTTCATCTTTCACTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTTTAAATGACTTACAGGTCTTGAAATTTCATCTTTCACTTCAA  300

seq1  AACAGAGGAAAGGTAATGACCCCTGAATGACATGTTCAGACATGTTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAAAGGTAATGACCCCTGAATGACATGTTCAGACATGTTGAGG  350

seq1  TTCAGGTTTACCAAGGCAACATTTTAGTGTAGCTCTTTACTAGGAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTTACCAAGGCAACATTTTAGTGTAGCTCTTTACTAGGAGCTGA  400

seq1  CATCTAGTCAGAGAATTTTAGGGGAAACTCTTACCTCTTAGAATTTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTCAGAGAATTTTAGGGGAAACTCTTACCTCTTAGAATTTGTTA  450

seq1  CATTTTATTAGCTTGGAAATGAAAGTGGTTGCTGATGAAGTTGGAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTAGCTTGGAAATGAAAGTGGTTGCTGATGAAGTTGGAAAAAG  500

seq1  AAATTATTGAAAGACTCAGTGAATTAGACTAGAGAACTATGTTGTTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTGAAAGACTCAGTGAATTAGACTAGAGAACTATGTTGTTCAAG  550

seq1  CACTAGAAATTTTAGGAAATGCTGTCTCAATGTATTTGAAGAGATAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAAATTTTAGGAAATGCTGTCTCAATGTATTTGAAGAGATAAAGG  600

seq1  TCATATTAGAGGCAGTAGGTGAGAAATCACTAAGTGATCTGGCCATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAGAGGCAGTAGGTGAGAAATCACTAAGTGATCTGGCCATATAT  650

seq1  TTGCATGGGTGAAATTTGATCATGCCCAGTGAAGGGGAGATAG-AACCTG  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCATGGGTGAAATTTGATCATGCCCAGTGAAGGGGAGATAGAAACCTG  700

seq1  TAGAGACCACCTTCAGTAGATAGGCATGGCTCCCAGTCGAGGGATGGGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCACCTTCAGTAGATAGGCATGGCTCCCAGTCGAGGGATGGGGC  750

seq1  CACCCACCCATCTCAGTTTTTAAACCCAGAAATGTTCCTATCCAAAGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCATCTCAGTTTTTAAACCCAGAAATGTTCCTATCCAAAGGAA  800

seq1  AGACAGGGACAAAACATGGAAAAAAGACTGAAGAAAGGGCCATCCAGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGACAAAACATGGAAAAAAGACTGAAGAAAGGGCCATCCAGAGA  850

seq1  CTGCCCCACCTGGTGATCCATCCTGTCTCCAGACACCAAACCCCAACACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCACCTGGTGATCCATCCTGTCTCCAGACACCAAACCCCAACACT  900

seq1  TGCTATTGTCAAGAGGTGCTTGCTGACAGGGAACTAACTGGTGTGGCTGT  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCTATTGTCAAGA-GTGCTTGCTGACAGGGAACTAACTGGTGTGGCTGT  949

seq1  TCCTCGGAAGGTTCTGCCAGGAACTGACCAATGCAGACAGGGATGCTTGG  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTCGGAAGGTTCTGCCAGGAACTGACCAATGCAGACAGGGATGCTT-G  998

seq1  AGCCAACCATCAGACTGAGCTCAGGGACCCTGGT-GGGGGAGCTGGCTGA  1048
      |||||| |||||||||||||||| |||||||||| |||||||||||||||
seq2  AGCCAA-CATCAGACTGAGCTCA-GGACCCTGGTGGGGGGAGCTGGCTGA  1046

seq1  AGGCCTGGAGGAGCAGAGGGGGATTTCAACCCTGTAGGAAG-AACATTGT  1097
      |||| |||||||||  |  |||||||||||||||||||||| ||||||||
seq2  AGGCTTGGAGGAGCCAA--GGGATTTCAACCCTGTAGGAAGAAACATTGT  1094

seq1  CAGCT-GACTGGAC  1110
      ||||| ||||||||
seq2  CAGCTGGACTGGAC  1108