BAC Information

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BAC

Clone NameB6Ng01-015L22
Chromosome9 (Build37)
Map Location 77,023,169 - 77,189,538
singlet/doubletdoublet
Overlap gene2310046A06Rik
Upstream geneGfral, Hcrtr2, C530008M07Rik, Tinag, LOC436082
Downstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015L22.bB6Ng01-015L22.g
ACCDH849919DH849920
length9601,145
definitionDH849919|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L22, 5' end.DH849920|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,023,169 - 77,024,118)(77,188,360 - 77,189,538)
sequence
gaattctgttagctatagattctggttggttggtttgggtttggggtgtg
ttgtttgtttgttttctagggtctcattacagcctaaggtggactcaacc
tcataacgttcctgctcagcctgacaacagtgctgacaacagaataatgt
gcaaccatgtcctacttagcaattcggtttcataagaaccaagagtgaag
actgcaaagtgaggatgtgactatctctgaaagacaaatgactacatagg
gccccagctatgctggtcagccttggagaaactaattttgcttcccaaga
cataataccaaagtcacaaagtgataccaggctccttagtcactgtctgg
aactccattttcttgaaagccgtattggagaaacagtaaagttgcataag
attatatcctcttgtggatgtaagatatagaactgattctgtcttcttca
tgctagtggaacaaagcctggtagtaacctccactcttccctcagcctct
ttcacatatgcacgtgcactgcagcagcacatataaagcaggaaaatgag
aaaatgaagataattggtagactgtcttttcttgcccctattgtgcacag
ctctgcctctaactcatcattctatgggctcatcctctggaagcagatct
ggacctcacgtgggatttaagttaccctttcccctaagatctatgccttc
cctgagcagcacctgagtcactccagcatagcaacgcctgcagcatagca
acaagaagattgtgtgagctgcataaatgagagatgacctttatttgaat
atctgtgtatagagtgggaaatattcttaataaaggtttgacacattttt
caaatattgtgaatattttaggatccaatattcctttcactgtaaatgaa
cattttcctgtcccctgagctcattaaaaatgagattttacctataaacc
tatccatatc
gaattctggctttatttctggcgaagaggtaaagctgcacacattgtgat
attaaacaagagttgcttttcccacatgtttctcttatgtaagaacaatc
ccaccctgacatatttctagtcccttctctcttagagccactaacaaata
aataataaaaaatcttgatgaatccatgaccactaagtacagaggatgta
agatcctgtgaagggtgtgagaactgaagtcctactgtgtgcctgtaagg
acagtgagcctggggaaaagatgaactgggtgttttagtccaatcctcag
ctgtctgtaaaaatccacttttagtgcctgcatgtaactctgggtgcaga
tgaggacggcctgtgctgctaacatggtgggtagctcctgggagccttct
caaggagcccagtgcgagaaaaaaagttgtgtttatgtgacctttggcaa
atcacttaacctgtggttccttatctacaaagtgagaggttagattggtt
tttcaaggaatgttgtactgtgtagcattttataagtgtatgaaaaatgt
ccccttgctacggatttagcaaatcctttgcaaacagaagcagtcttgag
gcagtttattttttatatgtaaatgtgtttgtagaagttattgctattaa
taaaagactttttaaaatataaaattcacagttcagtactcatgtattca
attgcatatttttgcagttttttttctctttttcttactgagaaaacaat
agagtcaggaatttgatcatgggagaatattgtggaataagtgacgagaa
gaaaatgtaaaggtctcactatttgtgtagaaagatcaaaataaaatagt
gttttgcagaatattacaatattgtttttttttaatcagcaatgaaaact
tagaacacagaggaaacttgttttaaacgtcattttcaaaatggctctca
gctgtgactcttctgttttgtagtttaaccacccttgcaagcgcctgaca
agaataagctcgattgctcttgctttattagcccctccgcatcccagcag
tgagaaaacaaaataaaaatataaaagaaaccgtgaagtccgaaggaggc
aaatttgccgggttcagttcttttccgtacaaagctagggctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_77023169_77024118
seq2: B6Ng01-015L22.b_45_1003

seq1  GAATTCTGTTAGCTATAGATTCTGGTTGGTTGGTTTGGGTTTGGGGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTAGCTATAGATTCTGGTTGGTTGGTTTGGGTTTGGGGTGTG  50

seq1  TTGTTTGTTTGTTTTCTAGGGTCTCATTACAGCCTAAGGTGGACTCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTCTAGGGTCTCATTACAGCCTAAGGTGGACTCAACC  100

seq1  TCATAACGTTCCTGCTCAGCCTGACAACAGTGCTGACAACAGAATAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACGTTCCTGCTCAGCCTGACAACAGTGCTGACAACAGAATAATGT  150

seq1  GCAACCATGTCCTACTTAGCAATTCGGTTTCATAAGAACCAAGAGTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATGTCCTACTTAGCAATTCGGTTTCATAAGAACCAAGAGTGAAG  200

seq1  ACTGCAAAGTGAGGATGTGACTATCTCTGAAAGACAAATGACTACATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAAGTGAGGATGTGACTATCTCTGAAAGACAAATGACTACATAGG  250

seq1  GCCCCAGCTATGCTGGTCAGCCTTGGAGAAACTAATTTTGCTTCCCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCTATGCTGGTCAGCCTTGGAGAAACTAATTTTGCTTCCCAAGA  300

seq1  CATAATACCAAAGTCACAAAGTGATACCAGGCTCCTTAGTCACTGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACCAAAGTCACAAAGTGATACCAGGCTCCTTAGTCACTGTCTGG  350

seq1  AACTCCATTTTCTTGAAAGCCGTATTGGAGAAACAGTAAAGTTGCATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATTTTCTTGAAAGCCGTATTGGAGAAACAGTAAAGTTGCATAAG  400

seq1  ATTATATCCTCTTGTGGATGTAAGATATAGAACTGATTCTGTCTTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCCTCTTGTGGATGTAAGATATAGAACTGATTCTGTCTTCTTCA  450

seq1  TGCTAGTGGAACAAAGCCTGGTAGTAACCTCCACTCTTCCCTCAGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGGAACAAAGCCTGGTAGTAACCTCCACTCTTCCCTCAGCCTCT  500

seq1  TTCACATATGCACGTGCACTGCAGCAGCACATAT-AAGCAGGAAAATGAG  549
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCACATATGCACGTGCACTGCAGCAGCACATATAAAGCAGGAAAATGAG  550

seq1  AAAATGAAGATAATTGGTAGACTGTCTTTTCTTGCCCCTATTGTGCACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGATAATTGGTAGACTGTCTTTTCTTGCCCCTATTGTGCACAG  600

seq1  CTCTGCCTCTAACTCATCATTCTATGGGCTCATCCTCTGGAAGCAGATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTAACTCATCATTCTATGGGCTCATCCTCTGGAAGCAGATCT  650

seq1  GGACCTCACGTGGGATTTAAGTTACCCTTTCCCCTAAGATCTATGCCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCACGTGGGATTTAAGTTACCCTTTCCCCTAAGATCTATGCCTTC  700

seq1  CCTGAGCAGCACCTGAGTCACTCCAGCATAGCAACGCCTGCAAGCATAGC  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTGAGCAGCACCTGAGTCACTCCAGCATAGCAACGCCTGC-AGCATAGC  749

seq1  AACAAGAAGAATGTGTGAGCTGCATAAATGAGAGATGACCTTTATTTGAA  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAGATTGTGTGAGCTGCATAAATGAGAGATGACCTTTATTTGAA  799

seq1  TATCTGTGTATAGAGTGGGAAATATTCTTAAT-AAGGTTTGACACATTTT  848
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATCTGTGTATAGAGTGGGAAATATTCTTAATAAAGGTTTGACACATTTT  849

seq1  TCAATATATTGTG-ATA-TTTAGGAATCAATATT-CTTTCACTGT-AATG  894
      |||| |||||||| ||| |||||||  ||||||| |||||||||| ||||
seq2  TCAA-ATATTGTGAATATTTTAGGATCCAATATTCCTTTCACTGTAAATG  898

seq1  -ACATTTT-CTGTCCCCTGAGCTCATT-AAAATGAGATTTTACCTATAAA  941
       ||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  AACATTTTCCTGTCCCCTGAGCTCATTAAAAATGAGATTTTACCTATAAA  948

seq1  -CTAT-CATAT  950
       |||| |||||
seq2  CCTATCCATAT  959

seq1: chr9_77188360_77189538
seq2: B6Ng01-015L22.g_68_1212 (reverse)

seq1  TCCAGCCCTTGCTTTTGTTAACGAGAAAAAGAAACATGAACACCGGCTAG  50
      ||||||||| || |||||  ||  | |||||||   ||||| |||||   
seq2  TCCAGCCCTAGC-TTTGT--AC--GGAAAAGAA--CTGAAC-CCGGC---  39

seq1  GATTTTGCCTCTCTCGTGCTTCTACGTGTTTCTTTTTTTTTTTTTTTTTT  100
       | ||||||||  |||  |||| ||| ||||||||| | ||||| |||| 
seq2  AAATTTGCCTCCTTCGGACTTC-ACG-GTTTCTTTTATATTTTTATTTTG  87

seq1  TTTTTTTTTTTTCCTCAACCTGCTGTGATGCGGAGGGGCTAAAATTAAAG  150
      ||||         ||||  |||||| ||||||||||||||||   |||||
seq2  TTTT---------CTCA--CTGCTGGGATGCGGAGGGGCTAA---TAAAG  123

seq1  CAAGGAGCAATCGAGCTTATCTGTGTCAGGCGCTTTGCAGGGGGTGGTTA  200
      ||| ||||||||||||||||   |||||||||| |||||  |||||||| 
seq2  CAA-GAGCAATCGAGCTTATTCTTGTCAGGCGC-TTGCA-AGGGTGGTT-  169

seq1  AAACTACAAAACAGAAGGAGTCACAGCTGAAGAAGCCATTTTGGAAATGA  250
      |||||||||||||||| |||||||||||||   |||||||||| ||||||
seq2  AAACTACAAAACAGAA-GAGTCACAGCTGA--GAGCCATTTTGAAAATGA  216

seq1  CGTTTAAAACAAGTTTCTTCTGTGTTCTAAGTTTTCATTGCTGATTAAAA  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CGTTTAAAACAAGTTTCCTCTGTGTTCTAAGTTTTCATTGCTGATTAAAA  266

seq1  AAAAACAATATTGTAATATTCTGCAAAAACACTATTTTATTTTGATCTTT  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAACAATATTGTAATATTCTGC-AAAACACTATTTTATTTTGATCTTT  315

seq1  CTACACAAATAGTGAGACCTTTACATTTTCTTCTCGTCACTTATTCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAAATAGTGAGACCTTTACATTTTCTTCTCGTCACTTATTCCACA  365

seq1  ATATTCTCCCATGATCAAATTCCTGACTCTATTG-TTTCTCAGTAAGAAA  449
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATTCTCCCATGATCAAATTCCTGACTCTATTGTTTTCTCAGTAAGAAA  415

seq1  AAGAGAAAAAAAACTGCAAAAATATGCAATTGAATACATGAGTACTGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAAAAACTGCAAAAATATGCAATTGAATACATGAGTACTGAAC  465

seq1  TGTGAATTTTATATTTTAAAAAGTCTTTTATTAATAGCAATAACTTCTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTTATATTTTAAAAAGTCTTTTATTAATAGCAATAACTTCTAC  515

seq1  AAACACATTTACATATAAAAAATAAACTGCCTCAAGACTGCTTCTGTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTTACATATAAAAAATAAACTGCCTCAAGACTGCTTCTGTTTG  565

seq1  CAAAGGATTTGCTAAATCCGTAGCAAGGGGACATTTTTCATACACTTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATTTGCTAAATCCGTAGCAAGGGGACATTTTTCATACACTTATA  615

seq1  AAATGCTACACAGTACAACATTCCTTGAAAAACCAATCTAACCTCTCACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTACACAGTACAACATTCCTTGAAAAACCAATCTAACCTCTCACT  665

seq1  TTGTAGATAAGGAACCACAGGTTAAGTGATTTGCCAAAGGTCACATAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATAAGGAACCACAGGTTAAGTGATTTGCCAAAGGTCACATAAAC  715

seq1  ACAACTTTTTTTCTCGCACTGGGCTCCTTGAGAAGGCTCCCAGGAGCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTTTTTCTCGCACTGGGCTCCTTGAGAAGGCTCCCAGGAGCTAC  765

seq1  CCACCATGTTAGCAGCACAGGCCGTCCTCATCTGCACCCAGAGTTACATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTTAGCAGCACAGGCCGTCCTCATCTGCACCCAGAGTTACATG  815

seq1  CAGGCACTAAAAGTGGATTTTTACAGACAGCTGAGGATTGGACTAAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTAAAAGTGGATTTTTACAGACAGCTGAGGATTGGACTAAAACA  865

seq1  CCCAGTTCATCTTTTCCCCAGGCTCACTGTCCTTACAGGCACACAGTAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCATCTTTTCCCCAGGCTCACTGTCCTTACAGGCACACAGTAGG  915

seq1  ACTTCAGTTCTCACACCCTTCACAGGATCTTACATCCTCTGTACTTAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTTCTCACACCCTTCACAGGATCTTACATCCTCTGTACTTAGTG  965

seq1  GTCATGGATTCATCAAGATTTTTTATTATTTATTTGTTAGTGGCTCTAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGATTCATCAAGATTTTTTATTATTTATTTGTTAGTGGCTCTAAG  1015

seq1  AGAGAAGGGACTAGAAATATGTCAGGGTGGGATTGTTCTTACATAAGAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGACTAGAAATATGTCAGGGTGGGATTGTTCTTACATAAGAGA  1065

seq1  AACATGTGGGAAAAGCAACTCTTGTTTAATATCACAATGTGTGCAGCTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGGGAAAAGCAACTCTTGTTTAATATCACAATGTGTGCAGCTTT  1115

seq1  ACCTCTTCGCCAGAAATAAAGCCAGAATTC  1179
      ||||||||||||||||||||||||||||||
seq2  ACCTCTTCGCCAGAAATAAAGCCAGAATTC  1145