BAC Information

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BAC

Clone NameB6Ng01-016A21
Chromosome9 (Build37)
Map Location 122,474,699 - 122,610,453
singlet/doubletdoublet
Overlap gene9530059O14Rik
Upstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204
Downstream geneLOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016A21.bB6Ng01-016A21.g
ACCDH850142DH850143
length985857
definitionDH850142|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A21, 5' end.DH850143|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,474,699 - 122,475,516)(122,609,598 - 122,610,453)
sequence
gaattctaccaaaatgtaaagaattaacaatatgtttacataatgtgctc
cataaaacataaaagaacagaatacttcccaattaacttcatgaggcgct
aatcataaaactagactgtaaacaaagaaaaaagtagtaacgttcctgtc
agcatctttcatgaactttgatgtgaaaatccacaatttaatctaaatat
gtgtaaattatcattaatctatgtttgcccattgggatatatacacaggt
gaattactttgattctatatctgagaaccaatagataataacaatgtgcc
ttatggtaaaatagaaaaggtcaaaaacatctataagccctgtatctaga
attcttcatggtgaatgattttttccccagaagatcgggaatgaggtagg
ttgtttatgtcagcattgttgcccaacaaagagcttgcagccactgaaat
aagagaagttgggaaaacatggagatataaaggaagaaatctaatgtgcc
ttgttctcagagacatcatgattgcctctgtaggagaatcctacatgtga
taagtaaggtctgaatggtcacaatgatcaagctctatttgtaagttttt
taagatatatattttataagtgtgtatctgtgtgaggatctatgcacctg
tttacagtaccaacaaggtcagaggagcgtgtgagatcccctgaagctgg
ggtcacaggtacttctgggctgctggtcgtgggtgctatactgaactcca
gtcctctggatgaggaagagtgcttttaacagctgagccctttcttcagc
ccaaacatggaaattttaattgtgtctctatacatctaacagcgatcata
tggaaaccaaaattttaaatgagataacatttacagacacctccataaag
aaaagagaagaaaagaaaggtagaaaaagaaaaaaagaaaatccttaggt
ataaatctaagccaatcctaaatgaaaattaaaaa
gaattcactgtacacagcagtgacctgctcattcatacacaatccactca
atggttgattcccccacatcccactgcctggctcctgcttcgggaggtca
ctctgtatgcacacaagccctttgtttaaaatttgaatttggaaggagac
aagaaaagcccgactgaagggttgagcgctgtagaggagctcagcttcag
tgttcagagtatgagagccatacaactggggagatggggctgcccttgag
ggtaggactgaggtttccaccagtgcagactttggatactaataaatttg
ttttatttggtgtgtaaatatgtatgtgtgcaggtgcatgtgtgtgtagg
tgcacgtaaagaccagagggcaacctagagctgctgacactggacaggca
acataatctgagagtctctttcagtgtgtgtctgtgtgtctacatctctt
gtttgtctactgtttgaaacagggtcagccaggcatggtgactcttgcct
ttaatcttagcactggggaggcagaggcaggctgctctctgtgtttgagg
ccagcctaatctacagagcaagtcccaggactgccagagaaactctgtct
tgaagaaccaaaggagagatggttgggcagggatggggatgagggcaggt
acatcttactatgtagacttgactggatttgggggttgaactcaggtctt
tatgcttgcttactactgaaccatctcctcagcccccacatttgtattct
taagcagattgtgacatcaaagaagggaagaagggagtggaaaagactct
agacactcatccagtaggaactaggcattgagatgctggatgatcagtac
atttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122474699_122475516
seq2: B6Ng01-016A21.b_28_845

seq1  GAATTCTACCAAAATGTAAAGAATTAACAATATGTTTACATAATGTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAAAATGTAAAGAATTAACAATATGTTTACATAATGTGCTC  50

seq1  CATAAAACATAAAAGAACAGAATACTTCCCAATTAACTTCATGAGGCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACATAAAAGAACAGAATACTTCCCAATTAACTTCATGAGGCGCT  100

seq1  AATCATAAAACTAGACTGTAAACAAAGAAAAAAGTAGTAACGTTCCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAAACTAGACTGTAAACAAAGAAAAAAGTAGTAACGTTCCTGTC  150

seq1  AGCATCTTTCATGAACTTTGATGTGAAAATCCACAATTTAATCTAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTCATGAACTTTGATGTGAAAATCCACAATTTAATCTAAATAT  200

seq1  GTGTAAATTATCATTAATCTATGTTTGCCCATTGGGATATATACACAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATTATCATTAATCTATGTTTGCCCATTGGGATATATACACAGGT  250

seq1  GAATTACTTTGATTCTATATCTGAGAACCAATAGATAATAACAATGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTTTGATTCTATATCTGAGAACCAATAGATAATAACAATGTGCC  300

seq1  TTATGGTAAAATAGAAAAGGTCAAAAACATCTATAAGCCCTGTATCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTAAAATAGAAAAGGTCAAAAACATCTATAAGCCCTGTATCTAGA  350

seq1  ATTCTTCATGGTGAATGATTTTTTCCCCAGAAGATCGGGAATGAGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCATGGTGAATGATTTTTTCCCCAGAAGATCGGGAATGAGGTAGG  400

seq1  TTGTTTATGTCAGCATTGTTGCCCAACAAAGAGCTTGCAGCCACTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATGTCAGCATTGTTGCCCAACAAAGAGCTTGCAGCCACTGAAAT  450

seq1  AAGAGAAGTTGGGAAAACATGGAGATATAAAGGAAGAAATCTAATGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTTGGGAAAACATGGAGATATAAAGGAAGAAATCTAATGTGCC  500

seq1  TTGTTCTCAGAGACATCATGATTGCCTCTGTAGGAGAATCCTACATGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCAGAGACATCATGATTGCCTCTGTAGGAGAATCCTACATGTGA  550

seq1  TAAGTAAGGTCTGAATGGTCACAATGATCAAGCTCTATTTGTAAGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGGTCTGAATGGTCACAATGATCAAGCTCTATTTGTAAGTTTTT  600

seq1  TAAGATATATATTTTATAAGTGTGTATCTGTGTGAGGATCTATGCACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATATATTTTATAAGTGTGTATCTGTGTGAGGATCTATGCACCTG  650

seq1  TTTACAGTACCAACAAGGTCAGAGGAGCGTGTGAGATCCCCTGAAGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTACCAACAAGGTCAGAGGAGCGTGTGAGATCCCCTGAAGCTGG  700

seq1  GGTCACAGGTACTTCTGGGCTGCTGGTCGTGGGTGCTATACTGAACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGGTACTTCTGGGCTGCTGGTCGTGGGTGCTATACTGAACTCCA  750

seq1  GTCCTCTGGATGAGGAAGAGTGCTTTTAACAGCTGAGCCCTTTCTTCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGATGAGGAAGAGTGCTTTTAACAGCTGAGCCCTTTCTTCAGC  800

seq1  CCAAACATGGAAATTTTA  818
      ||||||||||||||||||
seq2  CCAAACATGGAAATTTTA  818

seq1: chr9_122609598_122610453
seq2: B6Ng01-016A21.g_67_923 (reverse)

seq1  GAAAAATGTACTGATCATCCAGCATCTCACTG-CTAGTTCCTACTGGATG  49
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  GAAAAATGTACTGATCATCCAGCATCTCAATGCCTAGTTCCTACTGGATG  50

seq1  AGTGTCTAGAGTC-TTTCCACTCCCTTCTTCCCTTCTTTGATGTCACAAT  98
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTAGAGTCTTTTCCACTCCCTTCTTCCCTTCTTTGATGTCACAAT  100

seq1  CTTGCTTAAGAATACAAATGTGGGGGCTGAGGAGATGGTTCAGTAGTAAG  148
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TGCTTAAGAATACAAATGTGGGGGCTGAGGAGATGGTTCAGTAGTAAG  149

seq1  CAAGCATAAAGACCTGAGTTCAACCCCCAAATCCAGTCAAGTCTACATAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATAAAGACCTGAGTTCAACCCCCAAATCCAGTCAAGTCTACATAG  199

seq1  TAAGATGTACCTGCCCTCATCCCCATCCCTGCCCAACCATCTCTCCTTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTACCTGCCCTCATCCCCATCCCTGCCCAACCATCTCTCCTTTG  249

seq1  GTTCTTCAAGACAGAGTTTCTCTGGCAGTCCTGGGACTTGCTCTGTAGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAAGACAGAGTTTCTCTGGCAGTCCTGGGACTTGCTCTGTAGAT  299

seq1  TAGGCTGGCCTCAAACACAGAGAGCAGCCTGCCTCTGCCTCCCCAGTGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGCCTCAAACACAGAGAGCAGCCTGCCTCTGCCTCCCCAGTGCT  349

seq1  AAGATTAAAGGCAAGAGTCACCATGCCTGGCTGACCCTGTTTCAAACAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAAGGCAAGAGTCACCATGCCTGGCTGACCCTGTTTCAAACAGT  399

seq1  AGACAAACAAGAGATGTAGACACACAGACACACACTGAAAGAGACTCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACAAGAGATGTAGACACACAGACACACACTGAAAGAGACTCTCA  449

seq1  GATTATGTTGCCTGTCCAGTGTCAGCAGCTCTAGGTTGCCCTCTGGTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTTGCCTGTCCAGTGTCAGCAGCTCTAGGTTGCCCTCTGGTCTT  499

seq1  TACGTGCACCTACACACACATGCACCTGCACACATACATATTTACACACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGCACCTACACACACATGCACCTGCACACATACATATTTACACACC  549

seq1  AAATAAAACAAATTTATTAGTATCCAAAGTCTGCACTGGTGGAAACCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAATTTATTAGTATCCAAAGTCTGCACTGGTGGAAACCTCA  599

seq1  GTCCTACCCTCAAGGGCAGCCCCATCTCCCCAGTTGTATGGCTCTCATAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACCCTCAAGGGCAGCCCCATCTCCCCAGTTGTATGGCTCTCATAC  649

seq1  TCTGAACACTGAAGCTGAGCTCCTCTACAGCGCTCAACCCTTCAGTCGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACACTGAAGCTGAGCTCCTCTACAGCGCTCAACCCTTCAGTCGGG  699

seq1  CTTTTCTTGTCTCCTTCCAAATTCAAATTTTAAACAAAGGGCTTGTGTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTGTCTCCTTCCAAATTCAAATTTTAAACAAAGGGCTTGTGTGC  749

seq1  ATACAGAGTGACCTCCCGAAGCAGGAGCCAGGCAGTGGGATGTGGGGGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGTGACCTCCCGAAGCAGGAGCCAGGCAGTGGGATGTGGGGGAA  799

seq1  TCAACCATTGAGTGGATTGTGTATGAATGAGCAGGTCACTGCTGTGTACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCATTGAGTGGATTGTGTATGAATGAGCAGGTCACTGCTGTGTACA  849

seq1  GTGAATTC  856
      ||||||||
seq2  GTGAATTC  857