BAC Information

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BAC

Clone NameB6Ng01-016C21
Chromosome9 (Build37)
Map Location 26,632,662 - 26,703,423
singlet/doubletdoublet
Overlap geneGlb1l3, Gm1110
Upstream geneB3gat1, BC038479
Downstream geneLOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016C21.bB6Ng01-016C21.g
ACCDH850224DH850225
length1,116543
definitionDH850224|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C21, 5' end.DH850225|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,632,662 - 26,633,777)(26,702,875 - 26,703,423)
sequence
gaattcataacctctcagatcctcagtatgcgttgtgggtcaggaggagc
atacctcttgaagaaactcatcttcatgtccagagaatagatggtaaaat
tcgtcagcaaaaggccatcgatgctaaccacttcctttaatcctgtagat
gggaagcagagaagagtctagcaacaagtgctggatattctccaaagttt
gggacagagaaatacagtttatatatgcttcctttcgaggaatacagcca
agagaacaaatactaaactgacctactgtcatttgagttttcttgtagta
ttctttcacaggactaaaagctttcaccacttagtataaggatttttcct
gaaagaagactaagtcctgatctaaggtgggctagcatccaacataacta
ttctactttcccacctcagataacaagaaaagtgagaacgaaggaggggg
cacaaaggaacatcactgctcttgtaatgaaatagcccacttttcagtgg
gttatttctatcctctcaacctccaaacatccatagctataagcttcaag
taaatgaagagaagtcacattgtttctcagaaccaaagcctacctttctg
ctcactttgaattctccatgagtaattgattcgcccttgattctcaacca
ggatcctcagaagctgacaaccctgcttaggggaacaaattagtggaaac
aaaatagccatcaagagctcatattcaagaacatgttctttttttccaag
tcccaagaaactggttaaaagaggtttagaggcaagcagttcccaattga
cacccctcccagtctctctctctctctctctctctctctctctctctctc
tctctctctcacagtgtgtgcgtgagcgcgtgcatgtgagagagagagag
agagagggagagagagagagaccccaggtacattatcctatacttaatct
accctttcatttttgctgaccccattaggagggcaaaaaaaactctttat
tctgcttttgatccaaacaggagccagatgtggaatcgggacctgaaagg
agaacttctactctcatgaataatccatacaagcttgagaaaatgccttt
attgcctacacacttt
ttaaatcctaattctgtctctcctctctccctgtcccctctgcagtgctg
ctgaaggatgtccatgagatgttccacctcgggttctccctcaacttcta
catgttccaaggtggtaccaactttggcttaattggtggagctcagtctt
cagagggttacaagcctgtagtaaccagctatggtgagtattggtcccca
gaatcatctccaacctaggctgtcccatcgttgagtctagaacatagagg
atgagggaactctctggaactgtttagctggcttgactttaatgtgtgct
gagaactgaggatttggtatttgttcatgatcccactagatatcagggtc
ttggttttctggagctttgtgagtagacgggtttgtaactttagtcttgc
ttatctgctacgtggaaccttgctttaaaaatggcctattcggtcatcat
tgggaagagaggccccttggtcttgcaaactttatatgccccagtacagg
ggaaagccagggccaagaagtgggagtgggtgggtaggggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_26632662_26633777
seq2: B6Ng01-016C21.b_38_1153

seq1  GAATTCATAACCTCTCAGATCCTCAGTATGCGTTGTGGGTCAGGAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACCTCTCAGATCCTCAGTATGCGTTGTGGGTCAGGAGGAGC  50

seq1  ATACCTCTTGAAGAAACTCATCTTCATGTCCAGAGAATAGATGGTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTTGAAGAAACTCATCTTCATGTCCAGAGAATAGATGGTAAAAT  100

seq1  TCGTCAGCAAAAGGCCATCGATGCTAACCACTTCCTTTAATCCTGTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCAGCAAAAGGCCATCGATGCTAACCACTTCCTTTAATCCTGTAGAT  150

seq1  GGGAAGCAGAGAAGAGTCTAGCAACAAGTGCTGGATATTCTCCAAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAGAGAAGAGTCTAGCAACAAGTGCTGGATATTCTCCAAAGTTT  200

seq1  GGGACAGAGAAATACAGTTTATATATGCTTCCTTTCGAGGAATACAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAGAAATACAGTTTATATATGCTTCCTTTCGAGGAATACAGCCA  250

seq1  AGAGAACAAATACTAAACTGACCTACTGTCATTTGAGTTTTCTTGTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAATACTAAACTGACCTACTGTCATTTGAGTTTTCTTGTAGTA  300

seq1  TTCTTTCACAGGACTAAAAGCTTTCACCACTTAGTATAAGGATTTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACAGGACTAAAAGCTTTCACCACTTAGTATAAGGATTTTTCCT  350

seq1  GAAAGAAGACTAAGTCCTGATCTAAGGTGGGCTAGCATCCAACATAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGACTAAGTCCTGATCTAAGGTGGGCTAGCATCCAACATAACTA  400

seq1  TTCTACTTTCCCACCTCAGATAACAAGAAAAGTGAGAACGAAGGAGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTCCCACCTCAGATAACAAGAAAAGTGAGAACGAAGGAGGGGG  450

seq1  CACAAAGGAACATCACTGCTCTTGTAATGAAATAGCCCACTTTTCAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGAACATCACTGCTCTTGTAATGAAATAGCCCACTTTTCAGTGG  500

seq1  GTTATTTCTATCCTCTCAACCTCCAAACATCCATAGCTATAAGCTTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCTATCCTCTCAACCTCCAAACATCCATAGCTATAAGCTTCAAG  550

seq1  TAAATGAAGAGAAGTCACATTGTTTCTCAGAACCAAAGCCTACCTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGAGAAGTCACATTGTTTCTCAGAACCAAAGCCTACCTTTCTG  600

seq1  CTCACTTTGAATTCTCCATGAGTAATTGATTCGCCCTTGATTCTCAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTGAATTCTCCATGAGTAATTGATTCGCCCTTGATTCTCAACCA  650

seq1  GGATCCTCAGAAGCTGACAACCCTGCTTAGGGGAACAAATTAGTGGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCAGAAGCTGACAACCCTGCTTAGGGGAACAAATTAGTGGAAAC  700

seq1  AAAATAGCCATCAAGAGCTCATATTCAAGAACATGTTCTTTTTTTCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCCATCAAGAGCTCATATTCAAGAACATGTTCTTTTTTTCCAAG  750

seq1  TCCCAAGAAACTGGTTAAAAGAGGTTTAGAGGCAAGCAGTTCCCAATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAAACTGGTTAAAAGAGGTTTAGAGGCAAGCAGTTCCCAATTGA  800

seq1  CACCCCTCCCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTCCCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  850

seq1  TCTCTCTCTCTCAGTGTGTGCGTGAGCGCGTGCATGTGAGAGAGAGAGAG  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCACAGTGTGTGCGTGAGCGCGTGCATGTGAGAGAGAGAGAG  900

seq1  AGAGAGGGAGAGAGAGAGAGACCCCAGCT-CA-TATCCCATACTTAATCT  948
      ||||||||||||||||||||||||||| | || ||||| |||||||||||
seq2  AGAGAGGGAGAGAGAGAGAGACCCCAGGTACATTATCCTATACTTAATCT  950

seq1  ACCCTTTCATTTTTGCTGACCCCATTAGGATGGGCAAAAAAAACCCTTTC  998
      |||||||||||||||||||||||||||||| ||||||||||||| |||| 
seq2  ACCCTTTCATTTTTGCTGACCCCATTAGGA-GGGCAAAAAAAACTCTTT-  998

seq1  ATTCTGCTTTTGATCCAAACAGGAGCCAGATGTTGAATC-GGACCT--AA  1045
      ||||||||||||||||||||||||||||||||| ||||| ||||||  ||
seq2  ATTCTGCTTTTGATCCAAACAGGAGCCAGATGTGGAATCGGGACCTGAAA  1048

seq1  AGAGAACTTCTACTCTCAATAAATAATTCATACCAAAGCTT-AGAAAATG  1094
       |||||||||||||||| || |||||| |||||  |||||| ||||||||
seq2  GGAGAACTTCTACTCTC-ATGAATAATCCATAC--AAGCTTGAGAAAATG  1095

seq1  CCTTTATTGCCCTACACACTTT  1116
      ||||||||| ||||||||||||
seq2  CCTTTATTG-CCTACACACTTT  1116

seq1: chr9_26702875_26703423
seq2: B6Ng01-016C21.g_65_613 (reverse)

seq1  GCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCTTTCCCCTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCTTTCCCCTGTAC  50

seq1  TGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGA  100

seq1  CCGAATAGGCCATTTTTAAAGCAAGGTTCCACGTAGCAGATAAGCAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATAGGCCATTTTTAAAGCAAGGTTCCACGTAGCAGATAAGCAAGAC  150

seq1  TAAAGTTACAAACCCGTCTACTCACAAAGCTCCAGAAAACCAAGACCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTACAAACCCGTCTACTCACAAAGCTCCAGAAAACCAAGACCCTG  200

seq1  ATATCTAGTGGGATCATGAACAAATACCAAATCCTCAGTTCTCAGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAGTGGGATCATGAACAAATACCAAATCCTCAGTTCTCAGCACAC  250

seq1  ATTAAAGTCAAGCCAGCTAAACAGTTCCAGAGAGTTCCCTCATCCTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTCAAGCCAGCTAAACAGTTCCAGAGAGTTCCCTCATCCTCTAT  300

seq1  GTTCTAGACTCAACGATGGGACAGCCTAGGTTGGAGATGATTCTGGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGACTCAACGATGGGACAGCCTAGGTTGGAGATGATTCTGGGGAC  350

seq1  CAATACTCACCATAGCTGGTTACTACAGGCTTGTAACCCTCTGAAGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTCACCATAGCTGGTTACTACAGGCTTGTAACCCTCTGAAGACTG  400

seq1  AGCTCCACCAATTAAGCCAAAGTTGGTACCACCTTGGAACATGTAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACCAATTAAGCCAAAGTTGGTACCACCTTGGAACATGTAGAAGT  450

seq1  TGAGGGAGAACCCGAGGTGGAACATCTCATGGACATCCTTCAGCAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGAACCCGAGGTGGAACATCTCATGGACATCCTTCAGCAGCACT  500

seq1  GCAGAGGGGACAGGGAGAGAGGAGAGACAGAATTAGGATTTAAGAATTC  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGGACAGGGAGAGAGGAGAGACAGAATTAGGATTTAAGAATTC  549