BAC Information

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BAC

Clone NameB6Ng01-016F09
Chromosome9 (Build37)
Map Location 123,362,598 - 123,538,436
singlet/doubletdoublet
Overlap geneLars2, Limd1, Sacm1l, Slc6a20
Upstream geneLOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2
Downstream geneXtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016F09.bB6Ng01-016F09.g
ACCDH850326DH850327
length102981
definitionDH850326|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F09, 5' end.DH850327|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,362,598 - 123,362,699)(123,537,458 - 123,538,436)
sequence
gaattctagaagtcatcttgtccagacttctgtccctctccaaggcacta
gctctccattgttcaggggccttgggtccctgtggtggggatgggggtgg
ag
gaattcattaaggtcacaagatattaaagaatcaattgtaaaagcaaata
ctatgccaggcatggtggtgcacacctttagtcctagcacacaggatgct
cctccaactcagaaggcagaaacaagttggtaatcttgagtttgaggtca
gtttggtctacagatcaaattccaggacagccagggttactgagagaaac
tttgtctcaaaaagaaaacaaagcaaaaaccaaaaaagagaagtgttctg
gcttgtcctgcagacggcagtcagcagggactcccctagactgtgtcctt
acccttttggatttcttttatcctctggtctaaagtaaggagcacctgat
tagatttttaaaagcctgtaatgagagatatcagatatataaaccagaag
agaaggaagtctccatggctacgagcagatcctgctgtgggtttcagggc
tacattgactggttcttgctggatgaagtttaagaggctgtttcgggcac
ccacatttcctagcacttcataatttattccaagtgttgtcaataaggga
agcaccttcagccacactcgcagacgcaacagaggggtgcttatgtgtag
cagagtccaatcactgttgtagagtcaggagaacaagaaggggttaagct
cagaggctctgaaggcagactacagtgttctgagcacataacgggattct
cctagtttcttggttgccatggttaacagggagtgaatgtatagttctat
ttttccaccttggataccatcttagcctggcctggttgctatggttgggg
gatcttcagaggttggaaggtgttgttacccagtagccaagaatgccctt
tcagggagatgggacctgtgacatgatgtaatgtatgatttatccaaact
tgcctggagtgttctcagatttagtttttatgtttcttagtccaaggctt
tgagaatgaaatggctgataatttactctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_123362598_123362699
seq2: B6Ng01-016F09.b_45_146

seq1  GAATTCTAGAAGTCATCTTGTCCAGACTTCTGTCCCTCTCCAAGGCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAGTCATCTTGTCCAGACTTCTGTCCCTCTCCAAGGCACTA  50

seq1  GCTCTCCATTGTTCAGGGGCCTTGGGTCCCTGTGGTGGGGATGGGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCATTGTTCAGGGGCCTTGGGTCCCTGTGGTGGGGATGGGGGTGG  100

seq1  AG  102
      ||
seq2  AG  102

seq1: chr9_123537458_123538436
seq2: B6Ng01-016F09.g_67_1047 (reverse)

seq1  TAAGAGTAAATTAATCAG-CATTCCAATTCCAAAGCCTTGGCCTATGAAA  49
      |||||||||||| ||||| |||| || |  ||||||||||| ||| ||||
seq2  TAAGAGTAAATT-ATCAGCCATTTCATTCTCAAAGCCTTGGACTAAGAAA  49

seq1  CATAAAAACTAAATCTGAGGACACTCCAGGCAAGTTT-GATAAATCATAC  98
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  CATAAAAACTAAATCTGAGAACACTCCAGGCAAGTTTGGATAAATCATAC  99

seq1  ATTACATCATGTCACAGGTCCCATCTCCCTGAAAGGGCATTCTTGGCTAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCATGTCACAGGTCCCATCTCCCTGAAAGGGCATTCTTGGCTAC  149

seq1  TGGGTAAC-ACACCTTCCAACCTCTGAAGATCCCCCAACCATAGCAACCA  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAACAACACCTTCCAACCTCTGAAGATCCCCCAACCATAGCAACCA  199

seq1  GGCCAGGCTAAGATGGTATCCAAGGTGGAAAAATAGAACTATACATTCAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTAAGATGGTATCCAAGGTGGAAAAATAGAACTATACATTCAC  249

seq1  TCCCTGTTAACCATGGCAACCAAGAAACTAGGAGAATCCCGTTATGTGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTAACCATGGCAACCAAGAAACTAGGAGAATCCCGTTATGTGCT  299

seq1  CAGAACACTGTAGTCTGCCTTCAGAGCCTCTGAGCTTAACCCCTTCTTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACTGTAGTCTGCCTTCAGAGCCTCTGAGCTTAACCCCTTCTTGT  349

seq1  TCTCCTGACTCTACAACAGTGATTGGACTCTGCTACACATAAGCACCCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGACTCTACAACAGTGATTGGACTCTGCTACACATAAGCACCCCT  399

seq1  CTGTTGCGTCTGCGAGTGTGGCTGAAGGTGCTTCCCTTATTGACAACACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCGTCTGCGAGTGTGGCTGAAGGTGCTTCCCTTATTGACAACACT  449

seq1  TGGAATAAATTATGAAGTGCTAGGAAATGTGGGTGCCCGAAACAGCCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAATTATGAAGTGCTAGGAAATGTGGGTGCCCGAAACAGCCTCT  499

seq1  TAAACTTCATCCAGCAAGAACCAGTCAATGTAGCCCTGAAACCCACAGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCATCCAGCAAGAACCAGTCAATGTAGCCCTGAAACCCACAGCA  549

seq1  GGATCTGCTCGTAGCCATGGAGACTTCCTTCTCTTCTGGTTTATATATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGCTCGTAGCCATGGAGACTTCCTTCTCTTCTGGTTTATATATCT  599

seq1  GATATCTCTCATTACAGGCTTTTAAAAATCTAATCAGGTGCTCCTTACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTCTCATTACAGGCTTTTAAAAATCTAATCAGGTGCTCCTTACTT  649

seq1  TAGACCAGAGGATAAAAGAAATCCAAAAGGGTAAGGACACAGTCTAGGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGAGGATAAAAGAAATCCAAAAGGGTAAGGACACAGTCTAGGGG  699

seq1  AGTCCCTGCTGACTGCCGTCTGCAGGACAAGCCAGAACACTTCTCTTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGCTGACTGCCGTCTGCAGGACAAGCCAGAACACTTCTCTTTTT  749

seq1  TGGTTTTTGCTTTGTTTTCTTTTTGAGACAAAGTTTCTCTCAGTAACCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTGCTTTGTTTTCTTTTTGAGACAAAGTTTCTCTCAGTAACCCT  799

seq1  GGCTGTCCTGGAATTTGATCTGTAGACCAAACTGACCTCAAACTCAAGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAATTTGATCTGTAGACCAAACTGACCTCAAACTCAAGAT  849

seq1  TACCAACTTGTTTCTGCCTTCTGAGTTGGAGGAGCATCCTGTGTGCTAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTTGTTTCTGCCTTCTGAGTTGGAGGAGCATCCTGTGTGCTAGG  899

seq1  ACTAAAGGTGTGCACCACCATGCCTGGCATAGTATTTGCTTTTACAATTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGTGTGCACCACCATGCCTGGCATAGTATTTGCTTTTACAATTG  949

seq1  ATTCTTTAATATCTTGTGACCTTAATGAATTC  979
      ||||||||||||||||||||||||||||||||
seq2  ATTCTTTAATATCTTGTGACCTTAATGAATTC  981