BAC Information

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BAC

Clone NameB6Ng01-016J16
Chromosome9 (Build37)
Map Location 75,592,467 - 75,754,151
singlet/doubletdoublet
Overlap geneBmp5
Upstream geneOnecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107
Downstream geneEG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016J16.bB6Ng01-016J16.g
ACCDH850524DH850525
length9991,022
definitionDH850524|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J16, 5' end.DH850525|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,592,467 - 75,593,471)(75,753,223 - 75,754,151)
sequence
gaattctgatctattgcattctggtgtgagaacttttgaaaattaagcta
atatgttgaaaaatttttgagactagcttatggacaattacatgattaat
tatccgtgcttaatttagcaagatgtatattacttaattgacagttcaaa
ttattcatgctctaattagatgaagtttgttaaatgtttcgtgtgatttc
taatttaattaatttattactatataagaactcctgaaatgttgggtttt
ggtgctatgttcatttctttttgtgacttctcaactttgtttatctgcat
tgctggctattttcttaagtacatgaagttatagagatattgatctttct
ttttatgtaagtcatatattgtatggtaaatatattgtataatatatata
ttgtatggtaaatgcctccatgtcaaatcgtattttcagtttttaagttt
tgtgattatcagagtcttagtagctttggggggtatatcaaacatttgta
tgatttatctcctattccctttctgtttatcttctggctctttgaagatt
atcatatctcttgaatgatattttatttttatatttttacctagtcaata
tggtagctttttctacttgtaaatagatccacccaaatataattattcat
gtacttcaatttatttctactgtgtaatttgtgtttggttgggaccagca
ggtcattcttcagtgaccgggtcctaaggggaattatcagggacgagaac
ataacaaagattggaaagcttgggtcaggaggtcttgcacagctgtatct
tatgccatacaagtttatgaaaagtactgtactttatgtaccatttgcag
agaaaaatgggccagagtcagtgggaagctatcaagaaataagatgaagc
cagcaggtagctagtggacatgttacttcaggggatcacagatatctcaa
atgggtcatgaccaagcttagagtgtccttgggactgatattccagtct
gaattcctgatctctccagaactttgaaaatgaaggggtgttgtattttg
ttgaagtcattttcagcatctaatgagatgatcgtgtggttttttttttt
tccatttgaaggtcagttgaccttgaacttacagtcctcctgcctctgac
ttctacctgttgggcaatggggatatgatcacacccagcttattgttatt
ggattagtaaagttaatataaacaatgccttatgatattatataacaaaa
attcatatgtcctcatatttaaaagaaagcacactacttagttatagttt
tttctaaaagacaaactttgttcagattgtagtcatacatgtcagggaca
aaaaaaaagataaattgcttcaatataatcatatattcttgccaaaaatg
ttctttaagttgctgaatttatgttttgaagttgggtaaaacattgactt
gaacgcattatatatcatggttgttccacacatgactactaaatcatatt
tgctaaccaggtacatttgccctcttccaactgaccctatttttttttcc
tattagtctattaattcttgtgagaaatttgctaatacttttacagtgaa
aagggtacattcgacctttattaatataaaaactgtcttatttatttaaa
gtttttacttttaactatgtgcaaagtttttacttttaactatgtgcaca
tgtatttgggcatggactggtgcatgtgagtgcagtgctcaaagagacca
gaagagggagtcagatcctcctactgctgagattacaggaagcagctaca
agcagccaaatagatgctggacttggatctgctgaaaagaacaagtgttc
ttaacccctgagccatctctctggcccccaattttttagtattaggaaca
tttaaaatttagagtagatgatgtgaaagctccgatgtatatctctcatt
gcctctataagattttaaaatggcaatgtaatttatttattacttattta
ccagtttcttagtggatctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_75592467_75593471
seq2: B6Ng01-016J16.b_29_1027

seq1  GAATTCTGATCTATTGCATTCTGGTGTGAGAACTTTTGAAAATTAAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCTATTGCATTCTGGTGTGAGAACTTTTGAAAATTAAGCTA  50

seq1  ATATGTTGAAAAATTTTTGAGACTAGCTTATGGACAATTACATGATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGAAAAATTTTTGAGACTAGCTTATGGACAATTACATGATTAAT  100

seq1  TATCCGTGCTTAATTTAGCAAGATGTATATTACTTAATTGACAGTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGTGCTTAATTTAGCAAGATGTATATTACTTAATTGACAGTTCAAA  150

seq1  TTATTCATGCTCTAATTAGATGAAGTTTGTTAAATGTTTCGTGTGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATGCTCTAATTAGATGAAGTTTGTTAAATGTTTCGTGTGATTTC  200

seq1  TAATTTAATTAATTTATTACTATATAAGAACTCCTGAAATGTTGGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATTAATTTATTACTATATAAGAACTCCTGAAATGTTGGGTTTT  250

seq1  GGTGCTATGTTCATTTCTTTTTGTGACTTCTCAACTTTGTTTATCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTATGTTCATTTCTTTTTGTGACTTCTCAACTTTGTTTATCTGCAT  300

seq1  TGCTGGCTATTTTCTTAAGTACATGAAGTTATAGAGATATTGATCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTATTTTCTTAAGTACATGAAGTTATAGAGATATTGATCTTTCT  350

seq1  TTTTATGTAAGTCATATATTGTATGGTAAATATATTGTATAATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTAAGTCATATATTGTATGGTAAATATATTGTATAATATATATA  400

seq1  TTGTATGGTAAATGCCTCCATGTCAAATCGTATTTTCAGTTTTTAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGTAAATGCCTCCATGTCAAATCGTATTTTCAGTTTTTAAGTTT  450

seq1  TGTGATTATCAGAGTCTTAGTAGCTTTGGGGGGTATATCAAACATTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTATCAGAGTCTTAGTAGCTTTGGGGGGTATATCAAACATTTGTA  500

seq1  TGATTTATCTCCTATTCCCTTTCTGTTTATCTTCTGGCTCTTTGAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCTCCTATTCCCTTTCTGTTTATCTTCTGGCTCTTTGAAGATT  550

seq1  ATCATATCTCTTGAATGATATTTTATTTTTATATTTTTACCTAGTCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCTCTTGAATGATATTTTATTTTTATATTTTTACCTAGTCAATA  600

seq1  TGGTAGCTTTTTCTACTTGTAAATAGATCCACCCAAATATAATTATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTTTTTCTACTTGTAAATAGATCCACCCAAATATAATTATTCAT  650

seq1  GTACTTCAATTTATTTCTACTGTGTAATTTGTGTTTGGTTGGGACCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCAATTTATTTCTACTGTGTAATTTGTGTTTGGTTGGGACCAGCA  700

seq1  GGTCATTCTTCAGTGACCGGGTCCTAAGGGGAATTATCAGGGACGAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTCTTCAGTGACCGGGTCCTAAGGGGAATTATCAGGGACGAGAAC  750

seq1  ATAACAAAGATTGGAAAGCTTGGGTCAGGAGGTCTTGCACAGCTGTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGATTGGAAAGCTTGGGTCAGGAGGTCTTGCACAGCTGTATCT  800

seq1  TATGCCATACAAGTTTATGAAAAGTACTGTACTTTATGTACCATTTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGCCATACAAGTTTATGAAAAGTACTGTACTTTATGTACCATTTGCA-  849

seq1  GAGAAAAATGGGCCAGAGTCAGTGGGAAGCTATCAAGAAATAGGATGAAG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGAAAAATGGGCCAGAGTCAGTGGGAAGCTATCAAGAAATAAGATGAAG  899

seq1  CCAGCAGGTAGCTAGTGGAACAATGTTACTCCAGGGGATCACAGGATATC  950
      |||||||||||||||||||   |||||||| |||||||||||| ||||||
seq2  CCAGCAGGTAGCTAGTGGA--CATGTTACTTCAGGGGATCACA-GATATC  946

seq1  TCAAATGGGTCATAGACCAAGCATAGAGTGTCCTTGGGACTGATAATTCC  1000
      ||||||||||||| |||||||| ||||||||||||||||||||| |||||
seq2  TCAAATGGGTCAT-GACCAAGCTTAGAGTGTCCTTGGGACTGAT-ATTCC  994

seq1  AGTCT  1005
      |||||
seq2  AGTCT  999

seq1: chr9_75753223_75754151
seq2: B6Ng01-016J16.g_169_1086 (reverse)

seq1  AACAGTATCCACTAAAGGAAACTGGGTAATTATAGTAATAAAATAAATTA  50
      ||||| |||||||||  |||||| ||||| || |||||| ||||||||||
seq2  AACAG-ATCCACTAA--GAAACT-GGTAAATA-AGTAAT-AAATAAATTA  44

seq1  CATTGCCATTTTAAAAATCTTTATTAGAGGCAATGAGAGATATTACATCG  100
      |||||||||||| ||||||||   |||||||||||||||||| |||||||
seq2  CATTGCCATTTT-AAAATCTT--ATAGAGGCAATGAGAGATA-TACATCG  90

seq1  GAGCTTTCAACATCATCTACTCTTAAATTTTTAATGTTCCTAATACTATA  150
      |||||||| ||||||||||||| |||||||| |||||||||||||||| |
seq2  GAGCTTTC-ACATCATCTACTC-TAAATTTTAAATGTTCCTAATACTAAA  138

seq1  AAATTGGGGGCCAGAGAGATGGCTCAGGGGTTAAGAACACTTGTTC-TTT  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATTGGGGGCCAGAGAGATGGCTCAGGGGTTAAGAACACTTGTTCTTTT  188

seq1  CAGCAGATCCAAGTCCAGCATCTATTTGGCTGCTTGTAGCTGCTTCCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATCCAAGTCCAGCATCTATTTGGCTGCTTGTAGCTGCTTCCTGT  238

seq1  AATCTCAGCAGTAGGAGGATCTGACTCCCTCTTCTGGTCTCTTTGAGCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCAGTAGGAGGATCTGACTCCCTCTTCTGGTCTCTTTGAGCAC  288

seq1  TGCACTCACATGCACCAGTCCATGCCCAAATACATGTGCACATAGTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCACATGCACCAGTCCATGCCCAAATACATGTGCACATAGTTAAA  338

seq1  AGTAAAAACTTTGCACATAGTTAAAAGTAAAAACTTTAAATAAATAAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAACTTTGCACATAGTTAAAAGTAAAAACTTTAAATAAATAAGAC  388

seq1  AGTTTTTATATTAATAAAGGTCGAATGTACCCTTTTCACTGTAAAAGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATATTAATAAAGGTCGAATGTACCCTTTTCACTGTAAAAGTAT  438

seq1  TAGCAAATTTCTCACAAGAATTAATAGACTAATAGGAAAAAAAAATAGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATTTCTCACAAGAATTAATAGACTAATAGGAAAAAAAAATAGGG  488

seq1  TCAGTTGGAAGAGGGCAAATGTACCTGGTTAGCAAATATGATTTAGTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGAAGAGGGCAAATGTACCTGGTTAGCAAATATGATTTAGTAGT  538

seq1  CATGTGTGGAACAACCATGATATATAATGCGTTCAAGTCAATGTTTTACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGGAACAACCATGATATATAATGCGTTCAAGTCAATGTTTTACC  588

seq1  CAACTTCAAAACATAAATTCAGCAACTTAAAGAACATTTTTGGCAAGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCAAAACATAAATTCAGCAACTTAAAGAACATTTTTGGCAAGAAT  638

seq1  ATATGATTATATTGAAGCAATTTATCTTTTTTTTTGTCCCTGACATGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTATATTGAAGCAATTTATCTTTTTTTTTGTCCCTGACATGTAT  688

seq1  GACTACAATCTGAACAAAGTTTGTCTTTTAGAAAAAACTATAACTAAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAATCTGAACAAAGTTTGTCTTTTAGAAAAAACTATAACTAAGTA  738

seq1  GTGTGCTTTCTTTTAAATATGAGGACATATGAATTTTTGTTATATAATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTTCTTTTAAATATGAGGACATATGAATTTTTGTTATATAATAT  788

seq1  CATAAGGCATTGTTTATATTAACTTTACTAATCCAATAACAATAAGCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCATTGTTTATATTAACTTTACTAATCCAATAACAATAAGCTGG  838

seq1  GTGTGATCATATCCCCATTGCCCAACAGGTAGAAGTCAGAGGCAGGAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCATATCCCCATTGCCCAACAGGTAGAAGTCAGAGGCAGGAGGA  888

seq1  CTGTAAGTTCAAGGTCAACTGACCTTCAAA  929
      ||||||||||||||||||||||||||||||
seq2  CTGTAAGTTCAAGGTCAACTGACCTTCAAA  918