BAC Information

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BAC

Clone NameB6Ng01-016K16
Chromosome9 (Build37)
Map Location 17,719,222 - 17,844,678
singlet/doubletdoublet
Overlap geneEG665548
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710, LOC100040508
Downstream geneLOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K16.bB6Ng01-016K16.g
ACCDH850568DH850569
length1,005615
definitionDH850568|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K16, 5' end.DH850569|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,719,222 - 17,720,236)(17,844,065 - 17,844,678)
sequence
gaattccagggagtggtagctttatcttgattggttggctgggtctctag
ggactatgggcttctttgggattagctagggctctgggaacttccagaac
catagttgttggtggaggggcctggaaactcttactcactcactgctctt
cccttagaactggtgggaggggagcttcttatgggctgcctgtgtgctgt
ggtttttccagtaatttactttcccccaattgttcagttctgagaaacag
aaatttagggctacctagcctcttgaactgccaatttgaagtcttggtca
gcctgggtcagtcctctcagttttagaaatattattagaattataactgt
atatctcatgaaatatacactatgaaatgctccagcaaagattttatatg
atattggcttaacttgcaaagaataactctcatagaccagtagtgaatgg
catatttgtggtattgtgatagaatttctcacatgggttcaaaagcaatt
tctgtatgtatgcattctgcatgagttactttctcatagctatgacaaaa
taattgataaaggcattgtaaagcaaatgaatatattgactcatggtttg
ggtttgtggctaatacctatcattccttagaatgtgttggggaatggggc
atgatgcccctgctttctggaaacacagagagatgaaagctggtactcag
atgctttttcttgtgtcttctttactcagcttggaacccagcacaaatgg
gggctctgcctgtattcagtatgagtcttccctcccaagaaacctctgaa
aacattgtcacagctactctcaaaggggtgtctcctaggtgattctaaat
cagtcaagttaacaataaaaatgaactattgcattcatttctagtcactt
gacactattgcattatttatactttcatatactttctcctggtctaaagc
ctaatcttcacgcacattcagattggtctcagtcttctcaaaagtctgat
actct
gaattctctttattttctaattagagacagaaagagaatggattcagatg
ggatgggaggtaggaaggaactaggaggagatgatagatagttaggctgt
atatatggaaatataaactctatttgcaacaaaagagaacagtaccttaa
atattcaaggaaattaacaagtgaactacaagaagtactataggaattct
agaaattatatgggtagaatacatggtcttatctgtgaagaaatcattct
tgggggattctgagatgggctttgtttcagattcaatgaataggccctat
gtgcagtgaagtggaatgctcaaccaaatctataggacatttgtgtcaca
ctcctttatggagttcaggaactatttcatattgtatgtaagagatagag
gccagggagtactagaggaaaacagtgtgatctgaaaatgacatgaccac
tgcactcatgaaaccacagaagctatgattgcctgcaaaacacccataca
agactaatccagtcaatattctagcattgccagagattggctcacaagtt
cccctactgctactgtttcagttattgacaactgaaggcttctgaagagg
gaagaaccagttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17719222_17720236
seq2: B6Ng01-016K16.b_47_1051

seq1  GAATTCCAGGGAGTGGTAGCTTTATCTTGATTGGTTGGCTGGGTCTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGTGGTAGCTTTATCTTGATTGGTTGGCTGGGTCTCTAG  50

seq1  GGACTATGGGCTTCTTTGGGATTAGCTAGGGCTCTGGGAACTTCCAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATGGGCTTCTTTGGGATTAGCTAGGGCTCTGGGAACTTCCAGAAC  100

seq1  CATAGTTGTTGGTGGAGGGGCCTGGAAACTCTTACTCACTCACTGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTGTTGGTGGAGGGGCCTGGAAACTCTTACTCACTCACTGCTCTT  150

seq1  CCCTTAGAACTGGTGGGAGGGGAGCTTCTTATGGGCTGCCTGTGTGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGAACTGGTGGGAGGGGAGCTTCTTATGGGCTGCCTGTGTGCTGT  200

seq1  GGTTTTTCCAGTAATTTACTTTCCCCCAATTGTTCAGTTCTGAGAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCCAGTAATTTACTTTCCCCCAATTGTTCAGTTCTGAGAAACAG  250

seq1  AAATTTAGGGCTACCTAGCCTCTTGAACTGCCAATTTGAAGTCTTGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGGGCTACCTAGCCTCTTGAACTGCCAATTTGAAGTCTTGGTCA  300

seq1  GCCTGGGTCAGTCCTCTCAGTTTTAGAAATATTATTAGAATTATAACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTCAGTCCTCTCAGTTTTAGAAATATTATTAGAATTATAACTGT  350

seq1  ATATCTCATGAAATATACACTATGAAATGCTCCAGCAAAGATTTTATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCATGAAATATACACTATGAAATGCTCCAGCAAAGATTTTATATG  400

seq1  ATATTGGCTTAACTTGCAAAGAATAACTCTCATAGACCAGTAGTGAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGCTTAACTTGCAAAGAATAACTCTCATAGACCAGTAGTGAATGG  450

seq1  CATATTTGTGGTATTGTGATAGAATTTCTCACATGGGTTCAAAAGCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGTGGTATTGTGATAGAATTTCTCACATGGGTTCAAAAGCAATT  500

seq1  TCTGTATGTATGCATTCTGCATGAGTTACTTTCTCATAGCTATGACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTATGCATTCTGCATGAGTTACTTTCTCATAGCTATGACAAAA  550

seq1  TAATTGATAAAGGCATTGTAAAGCAAATGAATATATTGACTCATGGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAAAGGCATTGTAAAGCAAATGAATATATTGACTCATGGTTTG  600

seq1  GGTTTGTGGCTAATACCTATCATTCCTTAGAATGTGTTGGGGAATGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGGCTAATACCTATCATTCCTTAGAATGTGTTGGGGAATGGGGC  650

seq1  ATGATGCCCCTGCTTTCTGGAAACACAGAGAGATGAAAGCTGGTACTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCCCCTGCTTTCTGGAAACACAGAGAGATGAAAGCTGGTACTCAG  700

seq1  ATGCTTTTTCTTGTGTCTTCTTTACTCAGCTTGGAACCCAGCACAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTTCTTGTGTCTTCTTTACTCAGCTTGGAACCCAGCACAAATGG  750

seq1  GGGCTCTGCCTGTATTCAGTATGAGTCTTCCCT-CCAAGAAACCTCTGAA  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGCTCTGCCTGTATTCAGTATGAGTCTTCCCTCCCAAGAAACCTCTGAA  800

seq1  AACATTGTCACAGCTACTCTCAAAGGGGTGTCTCCTAGGTGATTCTAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACATTGTCACAGCTACTCTCAAAGGGGTGTCTCCTAGGTGATTCTAAA-  849

seq1  TCAGTCAAGTTAACAATAAAGATGAACTATTGCATTTCATTTCTAGTCAA  899
      |||||||||||||||||||| ||||||||||||| ||||||||||||| |
seq2  TCAGTCAAGTTAACAATAAAAATGAACTATTGCA-TTCATTTCTAGTC-A  897

seq1  CTTGACACTATTGCATTATTTTAATACTTTCCATAATACTTTCTCCTGGT  949
      |||||||||||||||||||||  ||||||| ||| |||||||||||||||
seq2  CTTGACACTATTGCATTATTT--ATACTTT-CAT-ATACTTTCTCCTGGT  943

seq1  CTAAAGTCTTATCCTCATCGCACAATTCAAGATATGTCTCAGTCATCTCA  999
      |||||| || ||| ||| ||||| |||| ||||  ||||||||| |||||
seq2  CTAAAGCCTAATCTTCA-CGCAC-ATTC-AGATTGGTCTCAGTCTTCTCA  990

seq1  AAAGTCCTGATACTCT  1015
      ||||| ||||||||||
seq2  AAAGT-CTGATACTCT  1005

seq1: chr9_17844065_17844678
seq2: B6Ng01-016K16.g_70_683 (reverse)

seq1  AAAACTGGTTCTTCCCTCTTCAGAAGCCTTCAGTTGTCAATAACTGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGTTCTTCCCTCTTCAGAAGCCTTCAGTTGTCAATAACTGAAAC  50

seq1  AGTAGCAGTAGGGGAACTTGTGAGCCAATCTCTGGCAATGCTAGAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGTAGGGGAACTTGTGAGCCAATCTCTGGCAATGCTAGAATATT  100

seq1  GACTGGATTAGTCTTGTATGGGTGTTTTGCAGGCAATCATAGCTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATTAGTCTTGTATGGGTGTTTTGCAGGCAATCATAGCTTCTGTG  150

seq1  GTTTCATGAGTGCAGTGGTCATGTCATTTTCAGATCACACTGTTTTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGAGTGCAGTGGTCATGTCATTTTCAGATCACACTGTTTTCCTC  200

seq1  TAGTACTCCCTGGCCTCTATCTCTTACATACAATATGAAATAGTTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTCCCTGGCCTCTATCTCTTACATACAATATGAAATAGTTCCTGA  250

seq1  ACTCCATAAAGGAGTGTGACACAAATGTCCTATAGATTTGGTTGAGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATAAAGGAGTGTGACACAAATGTCCTATAGATTTGGTTGAGCATT  300

seq1  CCACTTCACTGCACATAGGGCCTATTCATTGAATCTGAAACAAAGCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCACTGCACATAGGGCCTATTCATTGAATCTGAAACAAAGCCCAT  350

seq1  CTCAGAATCCCCCAAGAATGATTTCTTCACAGATAAGACCATGTATTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATCCCCCAAGAATGATTTCTTCACAGATAAGACCATGTATTCTA  400

seq1  CCCATATAATTTCTAGAATTCCTATAGTACTTCTTGTAGTTCACTTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATAATTTCTAGAATTCCTATAGTACTTCTTGTAGTTCACTTGTTA  450

seq1  ATTTCCTTGAATATTTAAGGTACTGTTCTCTTTTGTTGCAAATAGAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTGAATATTTAAGGTACTGTTCTCTTTTGTTGCAAATAGAGTTT  500

seq1  ATATTTCCATATATACAGCCTAACTATCTATCATCTCCTCCTAGTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCATATATACAGCCTAACTATCTATCATCTCCTCCTAGTTCCTT  550

seq1  CCTACCTCCCATCCCATCTGAATCCATTCTCTTTCTGTCTCTAATTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCCCATCCCATCTGAATCCATTCTCTTTCTGTCTCTAATTAGAA  600

seq1  AATAAAGAGAATTC  614
      ||||||||||||||
seq2  AATAAAGAGAATTC  614