BAC Information

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BAC

Clone NameB6Ng01-016L10
Chromosome9 (Build37)
Map Location 70,864,717 - 71,017,071
singlet/doubletdoublet
Overlap geneLOC100041628, Aqp9, 1700020I22Rik
Upstream geneGtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
Downstream geneLOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016L10.bB6Ng01-016L10.g
ACCDH850599DH850600
length809542
definitionDH850599|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L10, 5' end.DH850600|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,864,717 - 70,865,566)(71,016,524 - 71,017,071)
sequence
gaattcagatccctagtacttaaagcaaaaccagacacagaatgcacgac
cccatagtccctgtgctgggcagacagacacagggagatccctggggggg
gtcactagccagtcaatctagccaatcagtgagctccaggtctagtggaa
acatccaacaccagcctctggctttgacagacagacagacagacagacag
acagacacacacacacacacacacacacacacacacacacacacacacac
acacacagagagagagagagagagagagagagagagagagagagaggatt
cctcttgcccactttaagagagctctatgctctgccgatatagagctctg
acacaaaataagctggctttgttcaacaatcacctagaaatatgatcgtc
ttaaatgcccactctaacacagatggccattttgcataggaaggaccaag
gcttagttttaggaactctcctggggacactcagatgtgactattgatgt
ggcaactctctttcttgcctggtgcagattttctgagaagctgaactcaa
tgaagtgttccaaagaatgaagtgagaagcagtggcgggagagtgcctgt
tcacctagagctggtgcattagaactctctgctagctgcacagctctgct
agtaagtgtggacctactcagctaacagctagactctcacacatgaagtg
tcagtggtgtgtgtgtgcgtgtgtgcttcatatataccatagtcagagac
atgtgtggagtctgtcttctctctctctacatgtagtctgagtcgactca
gcttctcag
ctagatgtagtgacctggagctcacgcggatcgacaccattgcatgtctg
gtgccctgatcaaggcagcgatatctggggattgggtgttattgttgtga
cgtttctcctcacaaagttaaaaggacgacggagttccatgagtgatgaa
tccagcaagcagaacctctcccacaggatggcagagtgacaggtgacttc
cttcagcgtgcagcttcccacatctgcccaactcctacagccacaagcgg
taccagtacagctctgcagctggagcagggttgtctagaattcacaggtc
agaagagattaatttggcgccaaacctgcacaggctcccttcagggagcg
agctgagggcttcaatgttgtaggtcagacgagttgctattatcttattg
tagagaggacagacctgctgcagtgtgcagagcgcctgcccccaagttcg
tcttccttgggatacaaggatggctggaatcgtgcccttcccatcctggc
agatttgcgagctccgcagtcagcatgggggagggggttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70864717_70865566
seq2: B6Ng01-016L10.b_45_853

seq1  GAATTCAGATCCCTAGTACTTAAAGCAAAACCAGACACAGAATGCACGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCCTAGTACTTAAAGCAAAACCAGACACAGAATGCACGAC  50

seq1  CCCATAGTCCCTGTGCTGGGCAGACAGACACAGGGAGATCCCTGGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGTCCCTGTGCTGGGCAGACAGACACAGGGAGATCCCTGGGGGGG  100

seq1  GTCACTAGCCAGTCAATCTAGCCAATCAGTGAGCTCCAGGTCTAGTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAGCCAGTCAATCTAGCCAATCAGTGAGCTCCAGGTCTAGTGGAA  150

seq1  ACATCCAACACCAGCCTCTGGCTTTGACAGACAGACAGACAGACAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAACACCAGCCTCTGGCTTTGACAGACAGACAGACAGACAGACAG  200

seq1  ACAGACACACACACACACACACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACACACACACACACACACACACACACACACACACACACACACAC  250

seq1  ACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATT  300

seq1  CCTCTTGCCCACTTTAAGAGAGCTCTATGCTCTGCCGATATAGAGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCCCACTTTAAGAGAGCTCTATGCTCTGCCGATATAGAGCTCTG  350

seq1  ACACAAAATAAGCTGGCTTTGTTCAACAATCACCTAGAAATATGATCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATAAGCTGGCTTTGTTCAACAATCACCTAGAAATATGATCGTC  400

seq1  TTAAATGCCCACTCTAACACAGATGGCCATTTTGCATAGGAAGGACCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCCCACTCTAACACAGATGGCCATTTTGCATAGGAAGGACCAAG  450

seq1  GCTTAGTTTTAGGAACTCTCCTGGGGACACTCAGATGTGACTATTGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTTTAGGAACTCTCCTGGGGACACTCAGATGTGACTATTGATGT  500

seq1  GGCAACTCTCTTTCTTGCCTGGTGCAGATTTTTCTGAGAAGCTGAAACTC  550
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  GGCAACTCTCTTTCTTGCCTGGTGCAGA-TTTTCTGAGAAGCTG-AACTC  548

seq1  AATGAAGTGTTCCAAAAGAAATGAAGTGGAGAAAGCAAGTGGCGGGGAGA  600
      ||||||||||||||||   |||||||| ||| |||| |||||| ||||||
seq2  AATGAAGTGTTCCAAA--GAATGAAGT-GAG-AAGC-AGTGGC-GGGAGA  592

seq1  GGTGCCCTGGTTCACCTAGGAGGCTGGTGCATTAGAACCTCTCTGCTAGC  650
       |||||   ||||||||||   ||||||||||||||| ||||||||||||
seq2  -GTGCC--TGTTCACCTAG--AGCTGGTGCATTAGAA-CTCTCTGCTAGC  636

seq1  TGCACAGCTCTCGCCAAGTAAAGATGTGGGACCCTACTCCAGGCTAAACA  700
      |||||||||||   | |||||    ||| |  |||||||   ||| ||||
seq2  TGCACAGCTCT--GCTAGTAA----GTGTGGACCTACTC--AGCT-AACA  677

seq1  GCTTAGACTCTCCACACATGAAAGGTGTCAGGTGGTGTGTGTGTGCGTGT  750
      || |||||||| ||||||||||  |||||| |||||||||||||||||||
seq2  GC-TAGACTCT-CACACATGAA--GTGTCA-GTGGTGTGTGTGTGCGTGT  722

seq1  GTGCTTCATATATACCCATAGGTCAGAAGACAATGTGTGGGAGTCTGTTC  800
      |||||||||||||| ||||| ||||| |||| |||||| |||||||| ||
seq2  GTGCTTCATATATA-CCATA-GTCAG-AGAC-ATGTGT-GGAGTCTG-TC  766

seq1  TCTCTCTCTCTCTACCATGTAGGTCTGAGGGGTCGAACTCAGCTTCTCAG  850
      | |||||||||||| |||||| ||||||   |||| ||||||||||||||
seq2  T-TCTCTCTCTCTA-CATGTA-GTCTGA---GTCG-ACTCAGCTTCTCAG  809

seq1: chr9_71016524_71017071
seq2: B6Ng01-016L10.g_67_614 (reverse)

seq1  CACAACCCCCTCCCCCATGCTGACTGCGGAGCTCGCAAATCTGCCAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCCCTCCCCCATGCTGACTGCGGAGCTCGCAAATCTGCCAGGAT  50

seq1  GGGAAGGGCACGATTCCAGCCATCCTTGTATCCCAAGGAAGACGAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGCACGATTCCAGCCATCCTTGTATCCCAAGGAAGACGAACTTG  100

seq1  GGGGCAGGCGCTCTGCACACTGCAGCAGGTCTGTCCTCTCTACAATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGCGCTCTGCACACTGCAGCAGGTCTGTCCTCTCTACAATAAGA  150

seq1  TAATAGCAACTCGTCTGACCTACAACATTGAAGCCCTCAGCTCGCTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAACTCGTCTGACCTACAACATTGAAGCCCTCAGCTCGCTCCCT  200

seq1  GAAGGGAGCCTGTGCAGGTTTGGCGCCAAATTAATCTCTTCTGACCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGCCTGTGCAGGTTTGGCGCCAAATTAATCTCTTCTGACCTGTG  250

seq1  AATTCTAGACAACCCTGCTCCAGCTGCAGAGCTGTACTGGTACCGCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGACAACCCTGCTCCAGCTGCAGAGCTGTACTGGTACCGCTTGT  300

seq1  GGCTGTAGGAGTTGGGCAGATGTGGGAAGCTGCACGCTGAAGGAAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGGAGTTGGGCAGATGTGGGAAGCTGCACGCTGAAGGAAGTCAC  350

seq1  CTGTCACTCTGCCATCCTGTGGGAGAGGTTCTGCTTGCTGGATTCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTCTGCCATCCTGTGGGAGAGGTTCTGCTTGCTGGATTCATCAC  400

seq1  TCATGGAACTCCGTCGTCCTTTTAACTTTGTGAGGAGAAACGTCACAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAACTCCGTCGTCCTTTTAACTTTGTGAGGAGAAACGTCACAACA  450

seq1  ATAACACCCAATCCCCAGATATCGCTGCCTTGATCAGGGCACCAGACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACCCAATCCCCAGATATCGCTGCCTTGATCAGGGCACCAGACATG  500

seq1  CAATGGTGTCGATCCGCGTGAGCTCCAGGTCACTACATCTAGGAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGTCGATCCGCGTGAGCTCCAGGTCACTACATCTAGGAATTC  548