BAC Information

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BAC

Clone NameB6Ng01-016N22
Chromosome9 (Build37)
Map Location 92,617,863 - 92,769,236
singlet/doubletdoublet
Overlap geneLOC100039944, LOC667009
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016N22.bB6Ng01-016N22.g
ACCDH850713DH850714
length1,124907
definitionDH850713|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N22, 5' end.DH850714|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,768,089 - 92,769,236)(92,617,863 - 92,618,581)
sequence
gaattcatttgtagtgttaaaataaaaatgtgcttgctgtctttttctaa
gactaagggggcttgggtcgtggaatgatgatttgtgagataatcaaagg
ggaatctggaacaaatgtctgaattgatatgtaaacaaaaggctgggcct
tggtctgtgagaggtaaactatctcaataagatgcctggagagggagaag
gaaacagaggaaaaggtgaaagagcaaagaagatgaagacaaagacaaag
aaggatgaagaaaaggaggaagagtatttgctttttatatccatgacaaa
caaattgtgtttctcatcctaatttaataaaacaaacatgaaaaaattaa
ataaacccacaagaatgagaatggagatcataatattttttcaataagtg
aaatgaaaatagacaaatggtgatagatcaaagggaattaaataagtagg
agatataaagagaacataaaatacaaggcaaaggaaaagaaatgtgtaag
ataaagacagggaagaaattttagaaaagaaatatgggagagaaaagagg
gaagtttggcttacatatcaggtcctcagtgggaaataggacagacaaag
aaagagaagatggtatattaaagggaaacttaagaaaaaggaactcttga
aaattaaaatgacttacagggacattgctttacaaattagtaagagtttt
tagaatctctcctaaaatgtcaaaaaaggcttttccccaaaggctaaagg
agccaggcagagcatgaggaggctgaggcagagactgactgtgcaggtaa
ctgcagagaacctgcaaacagcaacatgggtagctctgagcagatgaggc
tacaagaaaccttatgattacgttaaataaactataggatatttgacctc
ttaaactacaggtatgtgtaaccttcattaaacaaaaaaaaaaaatccct
tgaaatgatactaaaaaatcccatcttgttatatataaaccaccactgta
catctctattgctcatagataagtgaccctcctcagatcttccaaagcta
tataatagtgtacatagttcagagcaattgagaagagcatggcttataac
ttacaccttagactacttaagaaa
gaattcttttcttagcagacgtttccaaacagaaaactgtctctagaact
ctctccaccctgcacctcgttttttttaacagatactccaaatttgacat
ttttatgcttgcttttttttaacacaaaaattatattattttattctctc
aacttactttgcaataaagtaattaaaactatgatgagtatatttatgga
aaaatttaaaggttcagacaactgtggtcttttttaaaaaatattttatt
aggtattttcctcatttacatttccaatgctatcccaaaagtcccccata
cactcccccccactcccctacccacccactcccactttttggccctggca
ttcccctgtactggggcatataaagtttgcaagtccagtgggcctctctt
tccagtgatggccgactaggccatcttttgatacatatgcagctagagtc
aagagctccggggtactggttagttcataatgttgttccacctatagggt
tgcagatccctttaggtccttgagtactttctctagctcctccattgggg
gccctgtgatccatccaatagctgactgtgagcatccacttctgtgtttg
ctaggccccggcatagtctcacaagagacagctatatctgggtcctttca
gcaaaatcttgctagtgtatgcaatggtgtcagtgtttggaagctgatta
tgggatggatcccggatatggcagtctctagatgatccatcctgtagtca
cagctccaaactttgtctctgtaactcagacaataagatcaagcatactc
cccactttttcttctatgagcttcagagtatcaggacatatgttgagatc
cttggtctatttagagttaatttttgtgttggatagacataagggtctag
ggaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92768089_92769236
seq2: B6Ng01-016N22.b_46_1169 (reverse)

seq1  TTTCTTTAGTAGTCTTAAAAGATTGTAAAGTTATAAGCCATGCTTCTTCT  50
      |||||| ||||||||   |||  ||| |||||||||||||||| ||||||
seq2  TTTCTTAAGTAGTCT---AAG-GTGT-AAGTTATAAGCCATGC-TCTTCT  44

seq1  CAAATTGCCTCTGAAACTATGTACACCTATTATATAGCTTTGG-AGATTC  99
      | ||||| ||||| ||||||||||| ||||||||||||||||| ||||  
seq2  C-AATTG-CTCTG-AACTATGTACA-CTATTATATAGCTTTGGAAGAT--  88

seq1  CTGGAGGAAGGGTCACTTTATTCTATGAGCAAATAGAGATTGTACAGTGG  149
      || |||| ||||||||||   ||||||||| |||||||| ||||||||||
seq2  CT-GAGG-AGGGTCACTT--ATCTATGAGC-AATAGAGA-TGTACAGTGG  132

seq1  TGGTTTTATATAATAACAAGATGGGATTTTTTTTAGTATCATTTTCAAGG  199
      ||| ||||||| ||||||||||||||  ||||||||||||| ||||||||
seq2  TGG-TTTATAT-ATAACAAGATGGGA--TTTTTTAGTATCA-TTTCAAGG  177

seq1  GATTTTTTTTTTTTTGTTTTAATGAAGGTTACACATACCTGTAGTTTAAG  249
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTTTT--GTTTAATGAAGGTTACACATACCTGTAGTTTAAG  225

seq1  AGGTCAAATATCCTATAGTTTATTTAACGTAATCATAAGGTTTCTTGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATATCCTATAGTTTATTTAACGTAATCATAAGGTTTCTTGTAG  275

seq1  CCTCATCTGCTCAGAGCTACCCATGTTGCTGTTTGCAGGTTCTCTGCAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTGCTCAGAGCTACCCATGTTGCTGTTTGCAGGTTCTCTGCAGT  325

seq1  TACCTGCACAGTCAGTCTCTGCCTCAGCCTCCTCATGCTCTGCCTGGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCACAGTCAGTCTCTGCCTCAGCCTCCTCATGCTCTGCCTGGCTC  375

seq1  CTTTAGCCTTTGGGGAAAAGCCTTTTTTGACATTTTAGGAGAGATTCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCCTTTGGGGAAAAGCCTTTTTTGACATTTTAGGAGAGATTCTAA  425

seq1  AAACTCTTACTAATTTGTAAAGCAATGTCCCTGTAAGTCATTTTAATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTACTAATTTGTAAAGCAATGTCCCTGTAAGTCATTTTAATTTT  475

seq1  CAAGAGTTCCTTTTTCTTAAGTTTCCCTTTAATATACCATCTTCTCTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTCCTTTTTCTTAAGTTTCCCTTTAATATACCATCTTCTCTTTC  525

seq1  TTTGTCTGTCCTATTTCCCACTGAGGACCTGATATGTAAGCCAAACTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTCCTATTTCCCACTGAGGACCTGATATGTAAGCCAAACTTCC  575

seq1  CTCTTTTCTCTCCCATATTTCTTTTCTAAAATTTCTTCCCTGTCTTTATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTCTCCCATATTTCTTTTCTAAAATTTCTTCCCTGTCTTTATC  625

seq1  TTACACATTTCTTTTCCTTTGCCTTGTATTTTATGTTCTCTTTATATCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATTTCTTTTCCTTTGCCTTGTATTTTATGTTCTCTTTATATCTC  675

seq1  CTACTTATTTAATTCCCTTTGATCTATCACCATTTGTCTATTTTCATTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATTTAATTCCCTTTGATCTATCACCATTTGTCTATTTTCATTTC  725

seq1  ACTTATTGAAAAAATATTATGATCTCCATTCTCATTCTTGTGGGTTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGAAAAAATATTATGATCTCCATTCTCATTCTTGTGGGTTTATT  775

seq1  TAATTTTTTCATGTTTGTTTTATTAAATTAGGATGAGAAACACAATTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTCATGTTTGTTTTATTAAATTAGGATGAGAAACACAATTTGT  825

seq1  TTGTCATGGATATAAAAAGCAAATACTCTTCCTCCTTTTCTTCATCCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGGATATAAAAAGCAAATACTCTTCCTCCTTTTCTTCATCCTTC  875

seq1  TTTGTCTTTGTCTTCATCTTCTTTGCTCTTTCACCTTTTCCTCTGTTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTGTCTTCATCTTCTTTGCTCTTTCACCTTTTCCTCTGTTTCC  925

seq1  TTCTCCCTCTCCAGGCATCTTATTGAGATAGTTTACCTCTCACAGACCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTCTCCAGGCATCTTATTGAGATAGTTTACCTCTCACAGACCAA  975

seq1  GGCCCAGCCTTTTGTTTACATATCAATTCAGACATTTGTTCCAGATTCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCCTTTTGTTTACATATCAATTCAGACATTTGTTCCAGATTCCC  1025

seq1  CTTTGATTATCTCACAAATCATCATTCCACGACCCAAGCCCCCTTAGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTATCTCACAAATCATCATTCCACGACCCAAGCCCCCTTAGTCT  1075

seq1  TAGAAAAAGACAGCAAGCACATTTTTATTTTAACACTACAAATGAATTC  1148
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGACAGCAAGCACATTTTTATTTTAACACTACAAATGAATTC  1124

seq1: chr9_92617863_92618581
seq2: B6Ng01-016N22.g_67_785

seq1  GAATTCTTTTCTTAGCAGACGTTTCCAAACAGAAAACTGTCTCTAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTAGCAGACGTTTCCAAACAGAAAACTGTCTCTAGAACT  50

seq1  CTCTCCACCCTGCACCTCGTTTTTTTTAACAGATACTCCAAATTTGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACCCTGCACCTCGTTTTTTTTAACAGATACTCCAAATTTGACAT  100

seq1  TTTTATGCTTGCTTTTTTTTAACACAAAAATTATATTATTTTATTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTTGCTTTTTTTTAACACAAAAATTATATTATTTTATTCTCTC  150

seq1  AACTTACTTTGCAATAAAGTAATTAAAACTATGATGAGTATATTTATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTTTGCAATAAAGTAATTAAAACTATGATGAGTATATTTATGGA  200

seq1  AAAATTTAAAGGTTCAGACAACTGTGGTCTTTTTTAAAAAATATTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAGGTTCAGACAACTGTGGTCTTTTTTAAAAAATATTTTATT  250

seq1  AGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATA  300

seq1  CACTCCCCCCCACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCCCCACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCA  350

seq1  TTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAGTGGGCCTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAGTGGGCCTCTCTT  400

seq1  TCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTC  450

seq1  AAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGT  500

seq1  TGCAGATCCCTTTAGGTCCTTGAGTACTTTCTCTAGCTCCTCCATTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCCCTTTAGGTCCTTGAGTACTTTCTCTAGCTCCTCCATTGGGG  550

seq1  GCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTG  600

seq1  CTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCA  650

seq1  GCAAAATCTTGCTAGTGTATGCAATGGTGTCAGTGTTTGGAAGCTGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCTTGCTAGTGTATGCAATGGTGTCAGTGTTTGGAAGCTGATTA  700

seq1  TGGGATGGATCCCGGATAT  719
      |||||||||||||||||||
seq2  TGGGATGGATCCCGGATAT  719