BAC Information

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BAC

Clone NameB6Ng01-016N23
Chromosome9 (Build37)
Map Location 65,761,213 - 65,890,075
singlet/doubletdoublet
Overlap geneCsnk1g1
Upstream geneAI115600, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik
Downstream genePpib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016N23.bB6Ng01-016N23.g
ACCDH850715DH850716
length1,2021,074
definitionDH850715|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N23, 5' end.DH850716|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,888,890 - 65,890,075)(65,761,213 - 65,762,300)
sequence
gaattcctcaggtttgggatcaccttggcgtgtcactggccttgaaagga
tcaccaccaccctgcacgttaaagggacctttgctacaaaacccaaatac
ctagtaagggatttgtgggtgctggagggtgccaacagtgcattaggaag
gacactcccccacatacacaaaccactcaggtttaacccctcaagagcta
gcctataaaaatattttaagacaaaaaagaagtcttaagcccagctgcag
ggcatcccaccctgcagccaagctggtcactgcctttactttaccttgga
agcagggtgggggaggcacttagtagggcagagagtgccaggttgccacc
atttcctgggataaagacttttaagtttctgtaggggaagtcagagttgc
ccacatgccaaatgagggactgtataaatgttagtgatgagctttaacta
ctatatagtaaaaaggaagcaaatcctaacactccaactccttatgggga
aggggtctgacctgacttctccctgccactctgattcacagacaaaaaca
tttcttgtaaagaaatggccaggtggcaatatttacaaatgctaaccagg
tttgaagtcagtgaggagattccctagccacagtccaatagaacaggtaa
ggtgcacaaactctgcttcatttgatactaaatttgatccatgaccacaa
gtgtcctgacatcttccagtccagttctctacatataaaaagcaaagagt
tctgtgctgtactaagtcactagccactgctctcggtggttagttcttta
tacccaaacacaagacctctttacccacgtgaataagcctttttgccaca
actagcataaagaagtttactatctggaaatgccactaatctcaaataaa
atagaacatggggaggagtaacccccacacactgttaactgtgcaccagt
gaatgctttcaccgtagcagaatagagtgtgtaccgggaaaacatgctta
gatatgtggtcatacttgttctggaacagtctctgtttcgaatggttaga
ttaaaatttagaaccttttcatatacagtttcctttttccctggaatttc
ctagcgaccaaccaaatcttactttctctgcttgcagcagcccctatgta
accaggttctaagcttggttgctatgatattgctccaatatcatcagcat
gg
gaattcatcagattatttttcaaaaatacaaaccctcagtagatttagat
tatataatattaatacgtaactaaataacatggattgttatgttgcgtta
tataggacaataatagacaatgcataaaggtaattgttgaattatttaat
gttctggatttggcttcaaatttgctatatagtcaaggctggccttaaac
ttttgatcctcttgtgttatcttataagtgctgagattgcaggcctgtgc
caccagatctggtattgctaagccatttttgtcatttccacttactatag
tttaattgctggtgaaagctatgtttttttttttaaggagtatattagaa
taaatggtggtattagaataaatctttattgattcggtagatcacaacct
gaaaaacaaaagtctgctcagaatttttatttagtgacaaacacactcta
atttatacttgtagcaatagtttttccttacctatatacctatggctttg
ttttaatctaaaatgtatacccaattcaatttggatttttttgacaggca
ggtgcagggcacatttgaatctaaataaatgccaagcaggggcaattagg
tttccagaactgagaaaaagcatactttgctgagtatagtagttggtact
tagcctgaccttagagacccaggtatctttgataggctgtaaagcagaac
taatgtgatatcccagaaatggcctgaagagagagccatctggacagaag
agactcatgctttgtctccagcaggaatgttctggtgaggtaggaagaca
gatggactatccctacaccactgtagtttgtctctcacttagaagcttca
agtggcagcgtagttatgtggggctgggatgccaggatagtaattttttt
tttttttttttctggctgtcacaagtggaagtgtggaattcctggaacga
ttcctttctttgcttttatagcatgtccagagaaggagggtagacaatta
gctgttctctttcactcgaagagattaggtacgcatctatcgttataaat
gctgggcggtgcttatgcttacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65888890_65890075
seq2: B6Ng01-016N23.b_50_1251 (reverse)

seq1  CCATGCCTGTGATAATTTTGGAGC-ATATCCATAGCAA-CAGGCTTAGAA  48
      ||||||   |||| || ||||||| |||| |||||||| || ||||||||
seq2  CCATGC---TGATGATATTGGAGCAATAT-CATAGCAACCAAGCTTAGAA  46

seq1  CGTGG-TACAT-GGGGCTGCTGCAAGCAGAGAAGGTAAGA-TTGGTTGGT  95
      | ||| ||||| ||||||||||||||||||||| |||||| |||||||||
seq2  CCTGGTTACATAGGGGCTGCTGCAAGCAGAGAAAGTAAGATTTGGTTGGT  96

seq1  -GCTAGGAAATTCCAGGG-AAAAGGAAACTGTA-ATGAAA--GGTCTAAA  140
       ||||||||||||||||| |||||||||||||| ||||||  | ||||||
seq2  CGCTAGGAAATTCCAGGGAAAAAGGAAACTGTATATGAAAAGGTTCTAAA  146

seq1  ATTTTATCTAAACAATCG-AACAGAGACTG-TCCAGA--CAGTATGACCA  186
       ||| |||||| || ||| ||||||||||| ||||||   ||||||||||
seq2  TTTTAATCTAACCATTCGAAACAGAGACTGTTCCAGAACAAGTATGACCA  196

seq1  CATATCTTAGCATGTTTTCCCCGGTACACACTCTA-TCTGCTACGGTG-A  234
      ||||||| |||||||||| |||||||||||||||| |||||||||||| |
seq2  CATATCTAAGCATGTTTT-CCCGGTACACACTCTATTCTGCTACGGTGAA  245

seq1  AGCA-TCACTGGTTGCACAGTTAACAGTGTGT-GGGGTTACTCCT-CCCA  281
      |||| ||||||| ||||||||||||||||||| |||||||||||| ||||
seq2  AGCATTCACTGG-TGCACAGTTAACAGTGTGTGGGGGTTACTCCTCCCCA  294

seq1  TGTTCTATTTTATTTGAGATTAGTGGCATTTCCAGATAGT-AACTTC-TT  329
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TGTTCTATTTTATTTGAGATTAGTGGCATTTCCAGATAGTAAACTTCTTT  344

seq1  ATGCTAGTTGTGGCAAAAAGGCTTATTCACGTGGGTAAAGAGGTCTTGTG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTTGTGGCAAAAAGGCTTATTCACGTGGGTAAAGAGGTCTTGTG  394

seq1  TTTGGGTATAAAGAACTAACCACCGAGAGCAGTGGCTAGTGACTTAGTAC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTATAAAGAACTAACCACCGAGAGCAGTGGCTAGTGACTTAGTAC  444

seq1  AGCACAGAACTCTTTGC-TTTTATATGTAGAGGACTGGACTGGAAGATGT  478
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  AGCACAGAACTCTTTGCTTTTTATATGTAGAGAACTGGACTGGAAGATGT  494

seq1  CAGGACACTTGTGGTCATGGATCAAATTTAGTATCAAATGAAGCAGAGTT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACTTGTGGTCATGGATCAAATTTAGTATCAAATGAAGCAGAGTT  544

seq1  TGTGCACCTTACCTGTTCTATTGGACTGTGGCTAGGGAATCTCCTCACTG  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCTTACCTGTTCTATTGGACTGTGGCTAGGGAATCTCCTCACTG  594

seq1  ACTTCAAACCTGGTTAGCATTTGTAAATATTGCCACCTGGCCATTTCTTT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACCTGGTTAGCATTTGTAAATATTGCCACCTGGCCATTTCTTT  644

seq1  ACAAGAAATGTTTTTGTCTGTGAATCAGAGTGGCAGGGAGAAGTCAGGTC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAATGTTTTTGTCTGTGAATCAGAGTGGCAGGGAGAAGTCAGGTC  694

seq1  AGACCCCTTCCCCATAAGGAGTTGGAGTGTTAGGATTTGCTTCCTTTTTA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTTCCCCATAAGGAGTTGGAGTGTTAGGATTTGCTTCCTTTTTA  744

seq1  CTATATAGTAGTTAAAGCTCATCACTAACATTTATACAGTCCCTCATTTG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGTAGTTAAAGCTCATCACTAACATTTATACAGTCCCTCATTTG  794

seq1  GCATGTGGGCAACTCTGACTTCCCCTACAGAAACTTAAAAGTCTTTATCC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGGCAACTCTGACTTCCCCTACAGAAACTTAAAAGTCTTTATCC  844

seq1  CAGGAAATGGTGGCAACCTGGCACTCTCTGCCCTACTAAGTGCCTCCCCC  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATGGTGGCAACCTGGCACTCTCTGCCCTACTAAGTGCCTCCCCC  894

seq1  ACCCTGCTTCCAAGGTAAAGTAAAGGCAGTGACCAGCTTGGCTGCAGGGT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTTCCAAGGTAAAGTAAAGGCAGTGACCAGCTTGGCTGCAGGGT  944

seq1  GGGATGCCCTGCAGCTGGGCTTAAGACTTCTTTTTTGTCTTAAAATATTT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCCCTGCAGCTGGGCTTAAGACTTCTTTTTTGTCTTAAAATATTT  994

seq1  TTATAGGCTAGCTCTTGAGGGGTTAAACCTGAGTGGTTTGTGTATGTGGG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGCTAGCTCTTGAGGGGTTAAACCTGAGTGGTTTGTGTATGTGGG  1044

seq1  GGAGTGTCCTTCCTAATGCACTGTTGGCACCCTCCAGCACCCACAAATCC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTCCTTCCTAATGCACTGTTGGCACCCTCCAGCACCCACAAATCC  1094

seq1  CTTACTAGGTATTTGGGTTTTGTAGCAAAGGTCCCTTTAACGTGCAGGGT  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAGGTATTTGGGTTTTGTAGCAAAGGTCCCTTTAACGTGCAGGGT  1144

seq1  GGTGGTGATCCTTTCAAGGCCAGTGACACGCCAAGGTGATCCCAAACCTG  1178
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGATCCTTTCAAGGCCAGTGACACGCCAAGGTGATCCCAAACCTG  1194

seq1  AGGAATTC  1186
      ||||||||
seq2  AGGAATTC  1202

seq1: chr9_65761213_65762300
seq2: B6Ng01-016N23.g_67_1140

seq1  GAATTCATCAGATTATTTTTCAAAAATACAAACCCTCAGTAGATTTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGATTATTTTTCAAAAATACAAACCCTCAGTAGATTTAGAT  50

seq1  TATATAATATTAATACGTAACTAAATAACATGGATTGTTATGTTGCGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATATTAATACGTAACTAAATAACATGGATTGTTATGTTGCGTTA  100

seq1  TATAGGACAATAATAGACAATGCATAAAGGTAATTGTTGAATTATTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGACAATAATAGACAATGCATAAAGGTAATTGTTGAATTATTTAAT  150

seq1  GTTCTGGATTTGGCTTCAAATTTGCTATATAGTCAAGGCTGGCCTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGATTTGGCTTCAAATTTGCTATATAGTCAAGGCTGGCCTTAAAC  200

seq1  TTTTGATCCTCTTGTGTTATCTTATAAGTGCTGAGATTGCAGGCCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCCTCTTGTGTTATCTTATAAGTGCTGAGATTGCAGGCCTGTGC  250

seq1  CACCAGATCTGGTATTGCTAAGCCATTTTTGTCATTTCCACTTACTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGATCTGGTATTGCTAAGCCATTTTTGTCATTTCCACTTACTATAG  300

seq1  TTTAATTGCTGGTGAAAGCTATGTTTTTTTTTTTAAGGAGTATATTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGCTGGTGAAAGCTATGTTTTTTTTTTTAAGGAGTATATTAGAA  350

seq1  TAAATGGTGGTATTAGAATAAATCTTTATTGATTCGGTAGATCACAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTGGTATTAGAATAAATCTTTATTGATTCGGTAGATCACAACCT  400

seq1  GAAAAACAAAAGTCTGCTCAGAATTTTTATTTAGTGACAAACACACTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAAAGTCTGCTCAGAATTTTTATTTAGTGACAAACACACTCTA  450

seq1  ATTTATACTTGTAGCAATAGTTTTTCCTTACCTATATACCTATGGCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACTTGTAGCAATAGTTTTTCCTTACCTATATACCTATGGCTTTG  500

seq1  TTTTAATCTAAAATGTATACCCAATTCAATTTGGATTTTTTTGACAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTAAAATGTATACCCAATTCAATTTGGATTTTTTTGACAGGCA  550

seq1  GGTGCAGGGCACATTTGAATCTAAATAAATGCCAAGCAGGGGCAATTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGGCACATTTGAATCTAAATAAATGCCAAGCAGGGGCAATTAGG  600

seq1  TTTCCAGAACTGAGAAAAAGCATACTTTGCTGAGTATAGTAGTTGGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAACTGAGAAAAAGCATACTTTGCTGAGTATAGTAGTTGGTACT  650

seq1  TAGCCTGACCTTAGAGACCCAGGTATCTTTGATAGGCTGTAAAGCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGACCTTAGAGACCCAGGTATCTTTGATAGGCTGTAAAGCAGAAC  700

seq1  TAATGTGATATCCCAGAAATGGCCTGAAGAGAGAGCCATCTGGACAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGATATCCCAGAAATGGCCTGAAGAGAGAGCCATCTGGACAGAAG  750

seq1  AGACTCATGCTTTGTCTCCAGCAGGAATGTTCTGGTGAGGTAGGAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATGCTTTGTCTCCAGCAGGAATGTTCTGGTGAGGTAGGAAGACA  800

seq1  GATGGACTATCCCTACACCACTGTAGTTTGTCCCTCACTTAGAAGCTTCA  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATGGACTATCCCTACACCACTGTAGTTTGTCTCTCACTTAGAAGCTTCA  850

seq1  AGTGGGCAGCGTAGTTATGTGGGGCTGGGATGCCAGGGATAGTAATTTTT  900
      ||| ||||||||||||||||||||||||||||||| |||||||||     
seq2  AGT-GGCAGCGTAGTTATGTGGGGCTGGGATGCCA-GGATAGTAA-----  893

seq1  TTTTTTTTTTTTTTTTTTTTTTTTGCCTGTCAC-AGTGGAGGTGTGGACA  949
          |||||||||||||||||| || ||||||| |||||| |||||||  
seq2  ----TTTTTTTTTTTTTTTTTTCTGGCTGTCACAAGTGGAAGTGTGGAAT  939

seq1  TTCTGGGAAACGATT-CTCTCTTGGCTTTTATAGCATGGCCAGAGAAGGA  998
      | ||||  ||||||| || |||| |||||||||||||| |||||||||||
seq2  TCCTGG--AACGATTCCTTTCTTTGCTTTTATAGCATGTCCAGAGAAGGA  987

seq1  GGGTAGACACAATAGCTGTTCCTCTTTCAC-CAAAGAGAATTAGGTACAG  1047
      ||||||||| | |||||||| ||||||||| | ||||| ||||||||| |
seq2  GGGTAGACA-ATTAGCTGTT-CTCTTTCACTCGAAGAG-ATTAGGTAC-G  1033

seq1  CATCTCTC-TTA-GAGTGCTTGGGCGGTGCTTAGTGCTTACCA  1088
      ||||| || |||  | ||| ||||||||||||| |||||||||
seq2  CATCTATCGTTATAAATGC-TGGGCGGTGCTTA-TGCTTACCA  1074