BAC Information

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BAC

Clone NameB6Ng01-016O05
Chromosome9 (Build37)
Map Location 17,166,972 - 17,288,143
singlet/doubletdoublet
Overlap genenone
Upstream geneFat3, EG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016O05.bB6Ng01-016O05.g
ACCDH850725DH850726
length9911,129
definitionDH850725|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O05, 5' end.DH850726|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,287,536 - 17,288,143)(17,166,972 - 17,168,111)
sequence
gaattcatattttccaggaacctatttaatcttactttctcttcactcca
ctgggctggaaggaaatggtatgttgtctacttggggaaagacctcccct
ttgggagtgaagaagagtcttagtcagggtttctattgctgtgataaaac
accaagaccaagaacaactttggaagaaaagggtttattttgcttaaaca
gccatgttataatccatcttcctgggacatcagggtagaaattcaaggca
ggaaactgaatgcaggaactgaagctgaggcaatggtggagtgttagttg
ttgtcttgatcttcccggcctgttcatattttttttttaaatatacccac
agggttactgacccagtgatggcactacacacagagttgacatctctaat
gacaatcactaacaaataaaatgtacaacagacttgcctacttgcaaatt
aatggaggctctttctgaaatgagagtctgtcttctcaaattatcttgct
taagtcaatttggcacaatactagtcagaataattgacccactgatggct
tgacacaccagtacattgctgaacagtagccctttcttttttgtttatcc
cacagtatctcataatataagcacggtataactttaaaagtactacagtt
ttaaaatgtcaataattttaaagttaaatctcaaaaagaaaaaaatccaa
agtctctttcaaagtttaagccttctaaaatatcaaatgtacccaaaata
ttcatagtctgtctttctaaaatagctccagtctctctaaaaatacctcg
catttttcagctgtggaatcttgtaaaatgaaagtgagtcaaatagttgt
acagtccaagagaaaataacccgggtcagtaaaattaaatcaaagcaaat
caagggactcagtcataatcttctgagctcctccaaaatttgtgcacata
taaaaatatttagctttctgcttagctcagatggctcactc
gaattcatttttatctgtggtctacatgaaggtaaaaccttttttattca
tttgtttactttgatgaactagcaatattttaagaaagtgtttattaaat
taacatattcaattactactgctatgaaagaccaatcaggcattcatgta
aaggcttacgtctttgctttcaatacacactattcataagctaagaaatc
aaatccaccagaaactaggaacaataaaatgccatttctcaaaatcttct
gagatagtgtggctctgccagggttgtgcccttttgcctccatagcagaa
agggaacaagcattggttatcttaagacacagcttttggtactttgatat
aatagactagggaacttacatgttttctttggtgctggactccagcaata
ttccattagttaactctgagtaacaaagaaaatttctattgtcatcatct
tcagtctatgagatgcagtaatagacccacatgctttgtgatttgaaatg
aatggttgttataactaaaattgttaagtctcagttgtttgtcactctta
taaatgttataaaggaaaactgactctaagcagtttctttgtaaagcata
tttgtagagatgccagatgtatggcttctttaggctacattgtcatgtat
aaagctaccacacttgaggactgtccaatcaagtacaaataattctaata
ctaaaaaaatataatactactaataaggttcaaatttccaaatgtcataa
cacaatgttttaatttggtgacacataaatttcattattacctgagtgtg
cttataactaaatttttattctcactcttgattatgaatgctactatctt
aaagattgtattatataatctggagggtttttttttaatacagattcaca
ctgtgttaagcaacagactatagcatcgtgtgtcttctcctctgctcatt
ccccagtttctttctacatttcttcacattagagagatgtgtgctaacac
ttcttacactccattccacatctttattgcttctgactcaggtgctctag
cacacctataacagcatgctctgctgttaagactggttatttggcttcac
ttctgtttctagatgaacaagctaggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17287536_17288143
seq2: B6Ng01-016O05.b_46_653 (reverse)

seq1  ATACTGTGGGATAAACAAAAAAGAAAGGGCTACTGTTCAGCAATGTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGGGATAAACAAAAAAGAAAGGGCTACTGTTCAGCAATGTACTG  50

seq1  GTGTGTCAAGCCATCAGTGGGTCAATTATTCTGACTAGTATTGTGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAAGCCATCAGTGGGTCAATTATTCTGACTAGTATTGTGCCAAA  100

seq1  TTGACTTAAGCAAGATAATTTGAGAAGACAGACTCTCATTTCAGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAAGCAAGATAATTTGAGAAGACAGACTCTCATTTCAGAAAGAG  150

seq1  CCTCCATTAATTTGCAAGTAGGCAAGTCTGTTGTACATTTTATTTGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTAATTTGCAAGTAGGCAAGTCTGTTGTACATTTTATTTGTTAG  200

seq1  TGATTGTCATTAGAGATGTCAACTCTGTGTGTAGTGCCATCACTGGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCATTAGAGATGTCAACTCTGTGTGTAGTGCCATCACTGGGTCA  250

seq1  GTAACCCTGTGGGTATATTTAAAAAAAAAATATGAACAGGCCGGGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCTGTGGGTATATTTAAAAAAAAAATATGAACAGGCCGGGAAGAT  300

seq1  CAAGACAACAACTAACACTCCACCATTGCCTCAGCTTCAGTTCCTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAACAACTAACACTCCACCATTGCCTCAGCTTCAGTTCCTGCATT  350

seq1  CAGTTTCCTGCCTTGAATTTCTACCCTGATGTCCCAGGAAGATGGATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTGCCTTGAATTTCTACCCTGATGTCCCAGGAAGATGGATTAT  400

seq1  AACATGGCTGTTTAAGCAAAATAAACCCTTTTCTTCCAAAGTTGTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTGTTTAAGCAAAATAAACCCTTTTCTTCCAAAGTTGTTCTTG  450

seq1  GTCTTGGTGTTTTATCACAGCAATAGAAACCCTGACTAAGACTCTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTGTTTTATCACAGCAATAGAAACCCTGACTAAGACTCTTCTTC  500

seq1  ACTCCCAAAGGGGAGGTCTTTCCCCAAGTAGACAACATACCATTTCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAAAGGGGAGGTCTTTCCCCAAGTAGACAACATACCATTTCCTTC  550

seq1  CAGCCCAGTGGAGTGAAGAGAAAGTAAGATTAAATAGGTTCCTGGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGTGGAGTGAAGAGAAAGTAAGATTAAATAGGTTCCTGGAAAAT  600

seq1  ATGAATTC  608
      ||||||||
seq2  ATGAATTC  608

seq1: chr9_17166972_17168111
seq2: B6Ng01-016O05.g_68_1196

seq1  GAATTCATTTTTATCTGTGGTCTACATGAAGGTAAAACCTTTTTTATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTATCTGTGGTCTACATGAAGGTAAAACCTTTTTTATTCA  50

seq1  TTTGTTTACTTTGATGAACTAGCAATATTTTAAGAAAGTGTTTATTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTACTTTGATGAACTAGCAATATTTTAAGAAAGTGTTTATTAAAT  100

seq1  TAACATATTCAATTACTACTGCTATGAAAGACCAATCAGGCATTCATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATTCAATTACTACTGCTATGAAAGACCAATCAGGCATTCATGTA  150

seq1  AAGGCTTACGTCTTTGCTTTCAATACACACTATTCATAAGCTAAGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTACGTCTTTGCTTTCAATACACACTATTCATAAGCTAAGAAATC  200

seq1  AAATCCACCAGAAACTAGGAACAATAAAATGCCATTTCTCAAAATCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACCAGAAACTAGGAACAATAAAATGCCATTTCTCAAAATCTTCT  250

seq1  GAGATAGTGTGGCTCTGCCAGGGTTGTGCCCTTTTGCCTCCATAGCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGTGTGGCTCTGCCAGGGTTGTGCCCTTTTGCCTCCATAGCAGAA  300

seq1  AGGGAACAAGCATTGGTTATCTTAAGACACAGCTTTTGGTACTTTGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAAGCATTGGTTATCTTAAGACACAGCTTTTGGTACTTTGATAT  350

seq1  AATAGACTAGGGAACTTACATGTTTTCTTTGGTGCTGGACTCCAGCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTAGGGAACTTACATGTTTTCTTTGGTGCTGGACTCCAGCAATA  400

seq1  TTCCATTAGTTAACTCTGAGTAACAAAGAAAATTTCTATTGTCATCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAGTTAACTCTGAGTAACAAAGAAAATTTCTATTGTCATCATCT  450

seq1  TCAGTCTATGAGATGCAGTAATAGACCCACATGCTTTGTGATTTGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTATGAGATGCAGTAATAGACCCACATGCTTTGTGATTTGAAATG  500

seq1  AATGGTTGTTATAACTAAAATTGTTAAGTCTCAGTTGTTTGTCACTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGTTATAACTAAAATTGTTAAGTCTCAGTTGTTTGTCACTCTTA  550

seq1  TAAATGTTATAAAGGAAAACTGACTCTAAGCAGTTTCTTTGTAAAGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTATAAAGGAAAACTGACTCTAAGCAGTTTCTTTGTAAAGCATA  600

seq1  TTTGTAGAGATGCCAGATGTATGGCTTCTTTAGGCTACATTGTCATGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAGATGCCAGATGTATGGCTTCTTTAGGCTACATTGTCATGTAT  650

seq1  AAAGCTACCACACTTGAGGACTGTCCAATCAAGTACAAATAATTCTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACCACACTTGAGGACTGTCCAATCAAGTACAAATAATTCTAATA  700

seq1  CTAAAAAAATATAATACTACTAATAAGGTTCAAATTTCCAAATGTCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAATATAATACTACTAATAAGGTTCAAATTTCCAAATGTCATAA  750

seq1  CACAATGTTTTAATTTGGTGACACATAAATTTCATTATTACCTGAGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTTTTAATTTGGTGACACATAAATTTCATTATTACCTGAGTGTG  800

seq1  CTTATAACTAAATTTTTATTCTCACTCTTGATTATGAATGCTACTATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACTAAATTTTTATTCTCACTCTTGATTATGAATGCTACTATCTT  850

seq1  AAAGATTGTATTATATAATCTGGAGGGTTTTTTTTTAATACAGATTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGTATTATATAATCTGGAGGGTTTTTTTTTAATACAGATTCACA  900

seq1  CTGTGTTAAGCAACAGACTATAGCATCGTGTGTCTTCTCCTCTGCTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAAGCAACAGACTATAGCATCGTGTGTCTTCTCCTCTGCTCATT  950

seq1  CCCCAGTTTCTTTCTACA-TTCTTCACATTAGAGAGATGTGTGCTAACAC  999
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCCAGTTTCTTTCTACATTTCTTCACATTAGAGAGATGTGTGCTAACAC  1000

seq1  TTC-TACACTCCATTCCACATCTTTATGGC-TCTGACCTCCAGGTGGCTC  1047
      ||| ||||||||||||||||||||||| || ||||||   ||||| ||||
seq2  TTCTTACACTCCATTCCACATCTTTATTGCTTCTGAC--TCAGGT-GCTC  1047

seq1  TTAGCCAACACTATTAACAGCATGGCCTCTGCTGTTAAGAGCTGGTGTAT  1097
       ||||  ||||   ||||||||||  |||||||||||||| ||||| |||
seq2  -TAGC--ACACCTATAACAGCATG--CTCTGCTGTTAAGA-CTGGT-TAT  1090

seq1  TTGCCTGTCAACTTCCTGTTTCTTAGGATGAAC-AGCTAGGTAA  1140
      ||| || || |||| ||||||||   ||||||| ||||||||||
seq2  TTGGCT-TC-ACTT-CTGTTTCT--AGATGAACAAGCTAGGTAA  1129