BAC Information

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BAC

Clone NameB6Ng01-016O16
Chromosome9 (Build37)
Map Location 27,853,419 - 27,991,078
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneNcapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016O16.bB6Ng01-016O16.g
ACCDH850745DH850746
length1,129861
definitionDH850745|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O16, 5' end.DH850746|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,989,953 - 27,991,078)(27,853,419 - 27,854,272)
sequence
gaattcaacaagatctactgtcatgaagctttctctctattttactttgg
tccttctgtctatagtatgatataaatgctgaaaagtaccataaacagaa
tttgaaattaaagtactctgaaagcacttttcctcatatctctgacaaaa
agtaatattcttaacaaaattatgaataagatcaatcaaaatatgatcaa
gatgcattgtttacatgtatggcattttcaaagaataaaaaatagaatat
ggaatagaaagaaatggtagatgattaataagccagtgacaaaatttatg
cctaccaagtgccagggactgaccgcatagggcaagtcctgcaatagaga
agtgtgtatgataaaaacacctgcccttgaggaatttgccagatcacact
ttgctatttatttttcaagcatattcggtgagttcacctgtatcacttca
tctgcagaaatgaatgattaccgcatttgactcaaggacgcccagactag
tgccagtcttgtaatagacagccagcacaaacctgctctccttgtgtccc
ctttttgtgtacccatgcactcagcatggcattaaggagggaattaaccc
atggccatggccattagtgatcccaactgccagtttgccattctgccacc
ccacaatgctcagcttagtggcagtggattccctaaagtgcttcacccct
ttagaatccagactttcccttctggtatttagggtctcacctaaagttct
tagtctctgagtagggagcctttctcccactcagcacccatgtgatgtta
agagctttactcagtaagaaatctaagactctctggactcatgaacttgc
atcattgttcagagagccttggagtgatcgggagggaaggcttggcagac
agtaaccaccgtgttcaggattttgtatcccttattaactgggctgggtt
cttaaggaagaaaaagagggataaggtgaaaggtaaagaggaaaaaaccc
agctccctcctcactgtgtcactggtgggttctgctggttatgctccttc
ttgaccactgcaattcatgtggctctctgaactgggaaaagccatagacc
cagacggccactcatctaatttagcagct
gaattctttcaaatgctggtgtgctgagaattgaggagtggatggcacag
atgtggggctcttaagactttttgaaagataaatgaaggaaaacagattt
ggatttttttttctgtttctgttttctttataaagaaaagctcaccctta
atatctaatggactgaaatccggaagaggtaagctggcatgttgatcagt
ggtagagtatttacctacaatgtgtggaactctggttttacccacaaatc
aagtagaagactgaagattcccaattggttaaagctgccatctgtgagga
ccagagatgaaagggaggggggatacagaggcattagtaggactctgctc
tctatagggagtgggttagtttgaggaggaagcagagaatagagaaagga
atgcaaatggactgcagagactctgcagggacatcaccagaacagtggga
gaactcactgtgagtgctgagctgaggcctgaaagccagtgtgccctctt
tctcactgcctggtattttctggcttattcaccccttttatttccctacc
ctttcatttgaaagcatgtttggagtagccaaggtcagaatgtctttgtc
tcagtgtcgtacttctggatacagagagaatcaccagtcttctgttaata
agtatgtttctaatcacattgagatatctgggtaaatcttttaaatatcg
taatttgccagtcataaggtatttcctacaacagagaggcatgtttttcc
taggcaccatgagtcttatatttcagaaaccattttctgataatcagatt
cttatattgaattcttcagatgaaatctcccttcaagctaatattactgt
atggtgatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27989953_27991078
seq2: B6Ng01-016O16.b_48_1176 (reverse)

seq1  AGCTGCTAAA-TAGAATTGAGTTGGCCGTCTGGGTCTATTGCTTTTCCCA  49
      |||||||||| ||||  |||| ||||||||||||||||| ||||||||||
seq2  AGCTGCTAAATTAGA--TGAG-TGGCCGTCTGGGTCTATGGCTTTTCCCA  47

seq1  GTTCAGAGAG-CACATGAATTGCAGTGGTCCAAGAAGGAGCATAAACAGC  98
      |||||||||| |||||||||||||||||| ||||||||||||||| ||||
seq2  GTTCAGAGAGCCACATGAATTGCAGTGGT-CAAGAAGGAGCATAACCAGC  96

seq1  AGGACCCA-CAGTGACACAGTGAGGAGGGAGCTGGGTTTTTTTCCTCTTT  147
      || ||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  AGAACCCACCAGTGACACAGTGAGGAGGGAGCTGGG-TTTTTTCCTCTTT  145

seq1  ACC-TTCACCTTATCCCTCTTTTTCTTCC-TAAGAACCCAG-CCAGTTAA  194
      ||| ||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  ACCTTTCACCTTATCCCTCTTTTTCTTCCTTAAGAACCCAGCCCAGTTAA  195

seq1  TAA-GGATACAAAATCCTGAACACGGTGGTTACTGTCTGCCAAGCCTTCC  243
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGATACAAAATCCTGAACACGGTGGTTACTGTCTGCCAAGCCTTCC  245

seq1  CT-CCGATCACTCCAAGGCTCTCTGAACAATGATGCAAGTTCATGAGTCC  292
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGATCACTCCAAGGCTCTCTGAACAATGATGCAAGTTCATGAGTCC  295

seq1  AGAGAGTCTTAGATTTCTTACTGAGTAAAGCTCTTAACATCACATGGGTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCTTAGATTTCTTACTGAGTAAAGCTCTTAACATCACATGGGTG  345

seq1  CTGAGTGGGAGAAAGGCTCCCTACTCAGAGACTAAGAACTTTAGGTGAGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGGAGAAAGGCTCCCTACTCAGAGACTAAGAACTTTAGGTGAGA  395

seq1  CCCTAAATACCAGAAGGGAAAGTCTGGATTCTAAAGGGGTGAAGCACTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATACCAGAAGGGAAAGTCTGGATTCTAAAGGGGTGAAGCACTTT  445

seq1  AGGGAATCCACTGCCACTAAGCTGAGCATTGTGGGGTGGCAGAATGGCAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCCACTGCCACTAAGCTGAGCATTGTGGGGTGGCAGAATGGCAA  495

seq1  ACTGGCAGTTGGGATCACTAATGGCCATGGCCATGGGTTAATTCCCTCCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGTTGGGATCACTAATGGCCATGGCCATGGGTTAATTCCCTCCT  545

seq1  TAATGCCATGCTGAGTGCATGGGTACACAAAAAGGGGACACAAGGAGAGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCATGCTGAGTGCATGGGTACACAAAAAGGGGACACAAGGAGAGC  595

seq1  AGGTTTGTGCTGGCTGTCTATTACAAGACTGGCACTAGTCTGGGCGTCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTGCTGGCTGTCTATTACAAGACTGGCACTAGTCTGGGCGTCCT  645

seq1  TGAGTCAAATGCGGTAATCATTCATTTCTGCAGATGAAGTGATACAGGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAAATGCGGTAATCATTCATTTCTGCAGATGAAGTGATACAGGTG  695

seq1  AACTCACCGAATATGCTTGAAAAATAAATAGCAAAGTGTGATCTGGCAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACCGAATATGCTTGAAAAATAAATAGCAAAGTGTGATCTGGCAAA  745

seq1  TTCCTCAAGGGCAGGTGTTTTTATCATACACACTTCTCTATTGCAGGACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGGGCAGGTGTTTTTATCATACACACTTCTCTATTGCAGGACT  795

seq1  TGCCCTATGCGGTCAGTCCCTGGCACTTGGTAGGCATAAATTTTGTCACT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTATGCGGTCAGTCCCTGGCACTTGGTAGGCATAAATTTTGTCACT  845

seq1  GGCTTATTAATCATCTACCATTTCTTTCTATTCCATATTCTATTTTTTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTAATCATCTACCATTTCTTTCTATTCCATATTCTATTTTTTAT  895

seq1  TCTTTGAAAATGCCATACATGTAAACAATGCATCTTGATCATATTTTGAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAAATGCCATACATGTAAACAATGCATCTTGATCATATTTTGAT  945

seq1  TGATCTTATTCATAATTTTGTTAAGAATATTACTTTTTGTCAGAGATATG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTATTCATAATTTTGTTAAGAATATTACTTTTTGTCAGAGATATG  995

seq1  AGGAAAAGTGCTTTCAGAGTACTTTAATTTCAAATTCTGTTTATGGTACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGTGCTTTCAGAGTACTTTAATTTCAAATTCTGTTTATGGTACT  1045

seq1  TTTCAGCATTTATATCATACTATAGACAGAAGGACCAAAGTAAAATAGAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATTTATATCATACTATAGACAGAAGGACCAAAGTAAAATAGAG  1095

seq1  AGAAAGCTTCATGACAGTAGATCTTGTTGAATTC  1126
      ||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTTCATGACAGTAGATCTTGTTGAATTC  1129

seq1: chr9_27853419_27854272
seq2: B6Ng01-016O16.g_69_929

seq1  GAATTCTTTCAAATGCTGGTGTGCTGAGAATTGAGGAGTGGATGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAATGCTGGTGTGCTGAGAATTGAGGAGTGGATGGCACAG  50

seq1  ATGTGGGGCTCTTAAGACTTTTTGAAAGATAAATGAAGGAAAACAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGCTCTTAAGACTTTTTGAAAGATAAATGAAGGAAAACAGATTT  100

seq1  GGATTTTTTTTTCTGTTTCTGTTTTCTTTATAAAGAAAAGCTCACCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTTTTTCTGTTTCTGTTTTCTTTATAAAGAAAAGCTCACCCTTA  150

seq1  ATATCTAATGGACTGAAATCCGGAAGAGGTAAGCTGGCATGTTGATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATGGACTGAAATCCGGAAGAGGTAAGCTGGCATGTTGATCAGT  200

seq1  GGTAGAGTATTTACCTACAATGTGTGGAACTCTGGTTTTACCCACAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTATTTACCTACAATGTGTGGAACTCTGGTTTTACCCACAAATC  250

seq1  AAGTAGAAGACTGAAGATTCCCAATTGGTTAAAGCTGCCATCTGTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGACTGAAGATTCCCAATTGGTTAAAGCTGCCATCTGTGAGGA  300

seq1  CCAGAGATGAAAGGGAGGGGGGATACAGAGGCATTAGTAGGACTCTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGAAAGGGAGGGGGGATACAGAGGCATTAGTAGGACTCTGCTC  350

seq1  TCTATAGGGAGTGGGTTAGTTTGAGGAGGAAGCAGAGAATAGAGAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGGAGTGGGTTAGTTTGAGGAGGAAGCAGAGAATAGAGAAAGGA  400

seq1  ATGCAAATGGACTGCAGAGACTCTGCAGGGACATCACCAGAACAGTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGGACTGCAGAGACTCTGCAGGGACATCACCAGAACAGTGGGA  450

seq1  GAACTCACTGTGAGTGCTGAGCTGAGGCCTGAAAGCCAGTGTGCCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTGTGAGTGCTGAGCTGAGGCCTGAAAGCCAGTGTGCCCTCTT  500

seq1  TCTCACTGCCTGGTATTTTCTGGCTTATTCACCCCTTTTATTTCCCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGCCTGGTATTTTCTGGCTTATTCACCCCTTTTATTTCCCTACC  550

seq1  CTTTCATTTGAAAGCATG-TTGGAGTAGCCAAGGTCAGAATGTCTTTGTC  599
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTTCATTTGAAAGCATGTTTGGAGTAGCCAAGGTCAGAATGTCTTTGTC  600

seq1  TCAGTGTCGTACTTCTGGATACAGAGAGAATCACCAGTCTTCTGTTAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCGTACTTCTGGATACAGAGAGAATCACCAGTCTTCTGTTAATA  650

seq1  AGTATGTTTCTAATCACATTGAGATATCTGGGTAAATC-TTTAAATATCG  698
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTATGTTTCTAATCACATTGAGATATCTGGGTAAATCTTTTAAATATCG  700

seq1  TAA-TTGCCAGTCATAAGGTATTTCCTACAACAGAGAGGCATGTTTTT-C  746
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAATTTGCCAGTCATAAGGTATTTCCTACAACAGAGAGGCATGTTTTTCC  750

seq1  TAGGCACCATGAGTCTTATATTCTAGAAACCA-TTTCTGATAATCAGATT  795
      ||||||||||||||||||||||  |||||||| |||||||||||||||||
seq2  TAGGCACCATGAGTCTTATATTTCAGAAACCATTTTCTGATAATCAGATT  800

seq1  CTTATATTGAA-TCTTCAGAT-AAATTTTCCTTCAAGCTATTATTACTGT  843
      ||||||||||| ||||||||| |||| | ||||||||||| |||||||||
seq2  CTTATATTGAATTCTTCAGATGAAATCTCCCTTCAAGCTAATATTACTGT  850

seq1  ATGGTGATCTG  854
      |||||||||||
seq2  ATGGTGATCTG  861