BAC Information

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BAC

Clone NameB6Ng01-017C16
Chromosome9 (Build37)
Map Location 43,458,491 - 43,591,649
singlet/doubletdoublet
Overlap geneLOC384931, Pvrl1
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Downstream geneLOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017C16.bB6Ng01-017C16.g
ACCDH850926DH850927
length759240
definitionDH850926|Mus musculus domesticus DNA, BAC clone: B6Ng01-017C16, 5' end.DH850927|Mus musculus domesticus DNA, BAC clone: B6Ng01-017C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,458,491 - 43,459,201)(43,591,410 - 43,591,649)
sequence
gaattcctataaacaaacaaggaaaagataaattatatgttagaatggat
gggcaaaggacatgaagggataaatacttcaccaacagtgatgtgtgaat
gactgattaacacatggtgcccaactaatccgtcatcagagaaatgcaaa
ttaaatccataatataatgttgccacacacccatcgccacagccaaaatt
acaaagatgggcaataccatgtgttggcaggtacacagaacaactgggac
ttctgacgtatctggcagaaatataaatgaatacaatcctcccagacaag
cgcctggcagtgtattcgctatctattaccatgtaacagattaccacaaa
cacagtgacttcaaacagcacatgcttattaccaaacagtctccacagac
caggaatccaaccaagctaagcctggggcctggggctcaaagctatctac
tccatgctgtcaaggatatgaggtgggggctggggggctgtgatcttacc
tgaatttgcacattcactcccctggttgttgaaaggattgcattcctcct
gacatatttactatggggagtcttctactggactgtcctcagtatcttag
agggctttctgaggcagaggcagtgtacaggcagaaattgtcatcttccc
atagctatcccagaggtgatgctcttaacatcttttctcggtttttaaag
gtgaggaggtgagcctagcaaatgctcgtgggaaaggtgaacgagaggct
ggtcactag
tcttggggacagagtttctgggatggctccaggggctctgtatccttcca
ctcactatcagccactcacagtagtgatcatgtcctgtgatcccacagtc
aggggctaattgctactgtctgagcccaggcgcctccacccccagctctg
gggtcacagaaactgcccatgttttcctcttggctgaatgctccccccga
ctccccacatggagttggttaatgatggggctgtggggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43458491_43459201
seq2: B6Ng01-017C16.b_90_800

seq1  ATGGGCAAAGGACATGAAGGGATAAATACTTCACCAACAGTGATGTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAAGGACATGAAGGGATAAATACTTCACCAACAGTGATGTGTGA  50

seq1  ATGACTGATTAACACATGGTGCCCAACTAATCCGTCATCAGAGAAATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGATTAACACATGGTGCCCAACTAATCCGTCATCAGAGAAATGCA  100

seq1  AATTAAATCCATAATATAATGTTGCCACACACCCATCGCCACAGCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATCCATAATATAATGTTGCCACACACCCATCGCCACAGCCAAAA  150

seq1  TTACAAAGATGGGCAATACCATGTGTTGGCAGGTACACAGAACAACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGATGGGCAATACCATGTGTTGGCAGGTACACAGAACAACTGGG  200

seq1  ACTTCTGACGTATCTGGCAGAAATATAAATGAATACAATCCTCCCAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGACGTATCTGGCAGAAATATAAATGAATACAATCCTCCCAGACA  250

seq1  AGCGCCTGGCAGTGTATTCGCTATCTATTACCATGTAACAGATTACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTGGCAGTGTATTCGCTATCTATTACCATGTAACAGATTACCACA  300

seq1  AACACAGTGACTTCAAACAGCACATGCTTATTACCAAACAGTCTCCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTGACTTCAAACAGCACATGCTTATTACCAAACAGTCTCCACAG  350

seq1  ACCAGGAATCCAACCAAGCTAAGCCTGGGGCCTGGGGCTCAAAGCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAATCCAACCAAGCTAAGCCTGGGGCCTGGGGCTCAAAGCTATCT  400

seq1  ACTCCATGCTGTCAAGGATATGAGGTGGGGGCTGGGGGGCTGTGATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGCTGTCAAGGATATGAGGTGGGGGCTGGGGGGCTGTGATCTTA  450

seq1  CCTGAATTTGCACATTCACTCCCCTGGTTGTTGAAAGGATTGCATTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTTGCACATTCACTCCCCTGGTTGTTGAAAGGATTGCATTCCTC  500

seq1  CTGACATATTTACTATGGGGAGTCTTCTACTGGACTGTCCTCAGTATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATATTTACTATGGGGAGTCTTCTACTGGACTGTCCTCAGTATCTT  550

seq1  AGAGGGCTTTCTGAGGCAGAGGCAGTGTACAGGCAGAAATTGTCATCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTTTCTGAGGCAGAGGCAGTGTACAGGCAGAAATTGTCATCTTC  600

seq1  CCATAGCTATCCCAGAGGTGATGCTCTTAACATCTTTTCTCGGTTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTATCCCAGAGGTGATGCTCTTAACATCTTTTCTCGGTTTTTAA  650

seq1  AGGTGAGGAGGTGAGCCTAGCAAATGCTCGTGGGAAAGGTGAACGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGAGGTGAGCCTAGCAAATGCTCGTGGGAAAGGTGAACGAGAGG  700

seq1  CTGGTCACTAG  711
      |||||||||||
seq2  CTGGTCACTAG  711

seq1: chr9_43591410_43591649
seq2: B6Ng01-017C16.g_66_305 (reverse)

seq1  AGCCCCACAGCCCCATCATTAACCAACTCCATGTGGGGAGTCGGGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACAGCCCCATCATTAACCAACTCCATGTGGGGAGTCGGGGGGAG  50

seq1  CATTCAGCCAAGAGGAAAACATGGGCAGTTTCTGTGACCCCAGAGCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGCCAAGAGGAAAACATGGGCAGTTTCTGTGACCCCAGAGCTGGG  100

seq1  GGTGGAGGCGCCTGGGCTCAGACAGTAGCAATTAGCCCCTGACTGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGCGCCTGGGCTCAGACAGTAGCAATTAGCCCCTGACTGTGGGA  150

seq1  TCACAGGACATGATCACTACTGTGAGTGGCTGATAGTGAGTGGAAGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGACATGATCACTACTGTGAGTGGCTGATAGTGAGTGGAAGGATA  200

seq1  CAGAGCCCCTGGAGCCATCCCAGAAACTCTGTCCCCAAGA  240
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCCTGGAGCCATCCCAGAAACTCTGTCCCCAAGA  240