BAC Information

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BAC

Clone NameB6Ng01-017H19
Chromosome9 (Build37)
Map Location 79,856,243 - 79,990,505
singlet/doubletdoublet
Overlap geneLOC666490, Senp6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218
Downstream geneLOC100041249, Myo6, Impg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H19.bB6Ng01-017H19.g
ACCDH851158DH851159
length1,1151,027
definitionDH851158|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H19, 5' end.DH851159|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,989,373 - 79,990,505)(79,856,243 - 79,857,267)
sequence
gaattcagtgtaagggtagggatgatatcagcttttaagacttcagaggc
gagtgtgtgtgtgtgtgtgtgtacgatgaagcagcatgaagcaaggtgag
gtacaccagaacagattggtcagagatgatcaacaagcctgggatctgct
tggcaataattatagtagttttatatcttaaaagatctctaccttgggaa
tttttgctccttacatttttattaattattttcttgtttttaatcacatg
aaaaatcaaatacatatttcatatttcactaaatatgatgaaatgaaact
cacctcaaaaaagctctctacatactgcagcacatagacaccacagtcac
tgaagttgttctgttgtgggacttttgggttggaccctttcataacatct
ttggaaaaacttcttttgcttccttttttcacctcccattccacttctaa
atacctacaacacacagtgccaagagtacacacacgtaagcatacatccc
agctacagtaaggacatcaaacgggtagggtataattttgaacttactct
cttagaattttgacaacatttgaacgagaagggcctctgagtgagtccat
aaggaggatacaaggtctacaggacaaaaataacagaagttaaatgtgaa
ttatgttacatgtgcataagaaaattaaaaatagtgttttgataagatta
aaattttcagtttcagtactcaagttgggaaagcaaaccttacaggcgta
agaaatgtagatatctctggtaacattaaacattgctacagaatagtaat
gaaactcgagcacaataaaaatgtatgcagtatgtgccgtggcatgcaca
tggagggacaacctgaaggggctggctctcgccttccgctacatgggttc
tggggatcattagactcgggtcatcgggcttggcagcaaatgtccttacc
tgctgcctagctcactgggctccaatagcctcattacagcttagtacaga
atcaacgggttacacagaatagttatgaccaatttagttttagcaggatt
tattttgaaacacctatatggactccagctaatgtttagaatttattctg
agagtatgtgtaagt
gaattccagggtaggtggccttgtcttgctctatctcctaaggacatcca
gaactattactggggtgtgaaggctggagcctggggtttttcctattagt
aactgacttagtctcctcaactgccaatttgaagtctgtcatggaatcgg
tctagccttctcaataacactgtgagcaacactgggcaacagggcaacat
gaggttctgactctaagcaacaagagctagcaaagtccagatctagtgat
ttgtaaatttctttccactgagcattgggctctgttcttctgtcatttga
aaatcagaaatgaactgtggctttgggggcatgggaactgctgtttccaa
aagtacacagtttccatttgtccatcaagtgaacaaaattccctattatt
ctaacagcatggggtgcttttctgccccactgtccccacagactctgagt
cgtgtgtgtcacccacagctcagttgttcttgtccagttcttcatcacta
ccaaaaccattccatcattggttcccctatccagttcaattgggtaatga
acacactcacatattttctaggtaaatactttaccactgataagttccca
gccttttaaatctttttttgagtcaagatctaatggaaaccactgcagaa
aaccacactgttcaaagtgcatagatttattgattgtgagtgcccagccc
cagcagatacacctacaacagaactcctgtacctaaggctgtagaagagg
gcagcagaaagattgtaagaggcagaggaccaggaattctgctgtgagac
tgtatctcctagactacacacatgctacctcaacaatgtcaataccagta
gacatgctaatggaaggaggaaatctctaagacttacaaggaagttgatg
actgtgaagaaggagaggattatcttcttctggagggatgcgcccctgga
tggcttactcaataatgaattgttcagcctgaaatcgtacacaggcaagc
acactaaatggatttgccggttgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79989373_79990505
seq2: B6Ng01-017H19.b_50_1164 (reverse)

seq1  ACTTACAACATACTTCTTCAGAATTAAAATTCTAAACATTAGCTCTGAGT  50
      |||||| |||||||   |||||||  ||||||||||||||||||  ||| 
seq2  ACTTAC-ACATACT--CTCAGAAT--AAATTCTAAACATTAGCT-GGAG-  43

seq1  TTCATATA-GTGTTTTAAAATAAAATCTTGCCTAAAAACTAATATTGTGT  99
      | |||||| |||||| ||||| ||||| |||   |||||||| |||| ||
seq2  TCCATATAGGTGTTTCAAAAT-AAATCCTGC--TAAAACTAA-ATTG-GT  88

seq1  CATAAACTAATTCTTGTGGTTACCCGTTTGATTTTCTGTAATAAGCTGTA  149
      ||| |||| |||| ||| || ||||| ||||  ||||||| |||||||||
seq2  CAT-AACT-ATTC-TGT-GTAACCCG-TTGA--TTCTGTACTAAGCTGTA  131

seq1  ATGAGGCTATTGGAGGCCAGTGAGCTAGGCAGCAGGTAAGGACATTTGCT  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTATTGGAGCCCAGTGAGCTAGGCAGCAGGTAAGGACATTTGCT  181

seq1  GCCAAGCCCGATGACCCGAGTCTAATGATCCCCAGAACCCATGTAGCGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCCGATGACCCGAGTCTAATGATCCCCAGAACCCATGTAGCGGA  231

seq1  AGGCGAGAGCCAGCCCCTTCAGGTTGTCCCTCCATGTGCATGCCACGGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGAGCCAGCCCCTTCAGGTTGTCCCTCCATGTGCATGCCACGGCA  281

seq1  CATACTGCATACATTTTTATTGTGCTCGAGTTTCATTACTATTCTGTAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCATACATTTTTATTGTGCTCGAGTTTCATTACTATTCTGTAGC  331

seq1  AATGTTTAATGTTACCAGAGATATCTACATTTCTTACGCCTGTAAGGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAATGTTACCAGAGATATCTACATTTCTTACGCCTGTAAGGTTT  381

seq1  GCTTTCCCAACTTGAGTACTGAAACTGAAAATTTTAATCTTATCAAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCAACTTGAGTACTGAAACTGAAAATTTTAATCTTATCAAAACA  431

seq1  CTATTTTTAATTTTCTTATGCACATGTAACATAATTCACATTTAACTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTAATTTTCTTATGCACATGTAACATAATTCACATTTAACTTCT  481

seq1  GTTATTTTTGTCCTGTAGACCTTGTATCCTCCTTATGGACTCACTCAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTGTCCTGTAGACCTTGTATCCTCCTTATGGACTCACTCAGAG  531

seq1  GCCCTTCTCGTTCAAATGTTGTCAAAATTCTAAGAGAGTAAGTTCAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTCGTTCAAATGTTGTCAAAATTCTAAGAGAGTAAGTTCAAAAT  581

seq1  TATACCCTACCCGTTTGATGTCCTTACTGTAGCTGGGATGTATGCTTACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCTACCCGTTTGATGTCCTTACTGTAGCTGGGATGTATGCTTACG  631

seq1  TGTGTGTACTCTTGGCACTGTGTGTTGTAGGTATTTAGAAGTGGAATGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACTCTTGGCACTGTGTGTTGTAGGTATTTAGAAGTGGAATGGG  681

seq1  AGGTGAAAAAAGGAAGCAAAAGAAGTTTTTCCAAAGATGTTATGAAAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAAAAGGAAGCAAAAGAAGTTTTTCCAAAGATGTTATGAAAGGG  731

seq1  TCCAACCCAAAAGTCCCACAACAGAACAACTTCAGTGACTGTGGTGTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCAAAAGTCCCACAACAGAACAACTTCAGTGACTGTGGTGTCTA  781

seq1  TGTGCTGCAGTATGTAGAGAGCTTTTTTGAGGTGAGTTTCATTTCATCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCAGTATGTAGAGAGCTTTTTTGAGGTGAGTTTCATTTCATCAT  831

seq1  ATTTAGTGAAATATGAAATATGTATTTGATTTTTCATGTGATTAAAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGAAATATGAAATATGTATTTGATTTTTCATGTGATTAAAAACA  881

seq1  AGAAAATAATTAATAAAAATGTAAGGAGCAAAAATTCCCAAGGTAGAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAATTAATAAAAATGTAAGGAGCAAAAATTCCCAAGGTAGAGAT  931

seq1  CTTTTAAGATATAAAACTACTATAATTATTGCCAAGCAGATCCCAGGCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGATATAAAACTACTATAATTATTGCCAAGCAGATCCCAGGCTT  981

seq1  GTTGATCATCTCTGACCAATCTGTTCTGGTGTACCTCACCTTGCTTCATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCATCTCTGACCAATCTGTTCTGGTGTACCTCACCTTGCTTCATG  1031

seq1  CTGCTTCATCGTACACACACACACACACACACTCGCCTCTGAAGTCTTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCATCGTACACACACACACACACACACTCGCCTCTGAAGTCTTAA  1081

seq1  AAGCTGATATCATCCCTACCCTTACACTGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  AAGCTGATATCATCCCTACCCTTACACTGAATTC  1115

seq1: chr9_79856243_79857267
seq2: B6Ng01-017H19.g_67_1093

seq1  GAATTCCAGGGTAGGTGGCCTTGTCTTGCTCTATCTCCTAAGGACATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTAGGTGGCCTTGTCTTGCTCTATCTCCTAAGGACATCCA  50

seq1  GAACTATTACTGGGGTGTGAAGGCTGGAGCCTGGGGTTTTTCCTATTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTACTGGGGTGTGAAGGCTGGAGCCTGGGGTTTTTCCTATTAGT  100

seq1  AACTGACTTAGTCTCCTCAACTGCCAATTTGAAGTCTGTCATGGAATCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTTAGTCTCCTCAACTGCCAATTTGAAGTCTGTCATGGAATCGG  150

seq1  TCTAGCCTTCTCAATAACACTGTGAGCAACACTGGGCAACAGGGCAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTTCTCAATAACACTGTGAGCAACACTGGGCAACAGGGCAACAT  200

seq1  GAGGTTCTGACTCTAAGCAACAAGAGCTAGCAAAGTCCAGATCTAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGACTCTAAGCAACAAGAGCTAGCAAAGTCCAGATCTAGTGAT  250

seq1  TTGTAAATTTCTTTCCACTGAGCATTGGGCTCTGTTCTTCTGTCATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATTTCTTTCCACTGAGCATTGGGCTCTGTTCTTCTGTCATTTGA  300

seq1  AAATCAGAAATGAACTGTGGCTTTGGGGGCATGGGAACTGCTGTTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAATGAACTGTGGCTTTGGGGGCATGGGAACTGCTGTTTCCAA  350

seq1  AAGTACACAGTTTCCATTTGTCCATCAAGTGAACAAAATTCCCTATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACAGTTTCCATTTGTCCATCAAGTGAACAAAATTCCCTATTATT  400

seq1  CTAACAGCATGGGGTGCTTTTCTGCCCCACTGTCCCCACAGACTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGCATGGGGTGCTTTTCTGCCCCACTGTCCCCACAGACTCTGAGT  450

seq1  CGTGTGTGTCACCCACAGCTCAGTTGTTCTTGTCCAGTTCTTCATCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTCACCCACAGCTCAGTTGTTCTTGTCCAGTTCTTCATCACTA  500

seq1  CCAAAACCATTCCATCATTGGTTCCCCTATCCAGTTCAATTGGGTAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCATTCCATCATTGGTTCCCCTATCCAGTTCAATTGGGTAATGA  550

seq1  ACACACTCACATATTTTCTAGGTAAATACTTTACCACTGATAAGTTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCACATATTTTCTAGGTAAATACTTTACCACTGATAAGTTCCCA  600

seq1  GCCTTTTAAATCTTTTTTTGAGTCAAGATCTAATGGAAACCACTGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAAATCTTTTTTTGAGTCAAGATCTAATGGAAACCACTGCAGAA  650

seq1  AACCACACTGTTCAAAGTGCATAGATTTATTGATTGTGAGTGCCCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTGTTCAAAGTGCATAGATTTATTGATTGTGAGTGCCCAGCCC  700

seq1  CAGCAGATACACCTACAACAGAACTCCTGTACCTAAGGCTGTAGAAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATACACCTACAACAGAACTCCTGTACCTAAGGCTGTAGAAGAGG  750

seq1  GCAGCAGAAAGATTGTAAGAGGCAGAGGACCAGGAATTCTGCTGTGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAAAGATTGTAAGAGGCAGAGGACCAGGAATTCTGCTGTGAGAC  800

seq1  TGTATCTCCTAGACTACACACATGCTACCTCAACAATGCCAATACCAGTA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTATCTCCTAGACTACACACATGCTACCTCAACAATGTCAATACCAGTA  850

seq1  GACATGCTAATGGAAGGAGGAAATCTCAAAGACCTACAAGGAAG-TGATG  899
      ||||||||||||||||||||||||||| ||||| |||||||||| |||||
seq2  GACATGCTAATGGAAGGAGGAAATCTCTAAGACTTACAAGGAAGTTGATG  900

seq1  ACTGTGAAGAAAGAGAGGATTATC-TCTTCT-GAGGGATGCGCCCCCTGA  947
      ||||||||||| |||||||||||| |||||| ||||||||||||||  ||
seq2  ACTGTGAAGAAGGAGAGGATTATCTTCTTCTGGAGGGATGCGCCCCTGGA  950

seq1  TTGCTTACTCAAT-ATGTAGTGGTCAGCCTGAAATCGTACACATGCAAGC  996
      | ||||||||||| ||| | || |||||||||||||||||||| ||||||
seq2  TGGCTTACTCAATAATGAATTGTTCAGCCTGAAATCGTACACAGGCAAGC  1000

seq1  AACACTAAATGGATTTGGCCGGTTGCATT  1025
       ||||||||||||||| ||||||||||||
seq2  -ACACTAAATGGATTT-GCCGGTTGCATT  1027