BAC Information

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BAC

Clone NameB6Ng01-017J12
Chromosome9 (Build37)
Map Location 92,186,929 - 92,359,124
singlet/doubletdoublet
Overlap genePlscr2, 1700057G04Rik, LOC666850, Plscr4
Upstream geneZic1, Zic4, LOC331000, Plscr1
Downstream genePlod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017J12.bB6Ng01-017J12.g
ACCDH851236DH851237
length1,105824
definitionDH851236|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J12, 5' end.DH851237|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,186,929 - 92,188,047)(92,358,307 - 92,359,124)
sequence
gaattcctatcaaaaccccactggtataatgatagtttcaatgtgagatg
tttaaaagacatatctctcttctctggtgttccattttccaaattttcca
ttacccagagtgaactgtggttttaatatctggaataaaagatccctgaa
ataaacagggcttaagttataaattacaccctagtcccagtaatggtgag
ctaagacctcaggctgtcctgttccacctgcctgggtgtgagtcatcttc
ctgtacaccctccacaatgtccatcacagaagctcattcttaggggtcag
tcacggaagggtgactttgtgttctctcacttagctgatcaggcagcctt
tatgccatagcctaaagcagtcacctgatctgggcagcctttttctcagt
tcatttatttcactacctcgcactgttcaactcacttcaccaaagggaag
agacatagaggctaagctcttttgagagagacacccattcttgttacttt
cgtcataaagtatgatcatacttttctcttttactaataagttttttcaa
aaacagttcagttcaccagatttataaaataaactgtaacagaaatacat
tagtaggacatgatttcacatacatagatctcagtaatgtctacatttgt
aggtctctatccgggtcttggcccatgtgacccttgcataaaacacactt
ctctgtatatacattcacagttctgcttctctgagctgtaataagccctt
gcagtgatctaggcattggaatgcgaatatgcctgacattatgagacttc
tacaacaaatggcctagccagcctcattgccatgtttttaatggaaagta
tttaacgatgaagaatgttttaaatttataatttatgtcttatttttctt
ggcatgtcataataatgagaaactcaacttccactcagaggaaatactcc
ctaggatgatagagctatccctttgtgggagcctcattctcgggctcacc
aaggttctgtttcagttatactttgctttactgctcttctctctcttcat
actgactcatcctctgtgaaatctgggtggtgtgaggatgggaacaccag
ggcca
gaattctcagcatgggtgaggtcctgggtttgaaccccaccacatattct
gtcaattttgcttttgttcattttttaaggtcatactataatgtccttac
tatagaaaacgaaaacacacacacacacacacacacacacagagtttaga
tcaaccaagtaacataaggattcctagaaggacccaccactaaaggtgac
ttggtaagaagcagaaataagaacagaattatagcaagacaatgagtcag
cattgcaggacgttcccacagggagaaactaagaacatagaacttctctg
ataaactacaaaattcttttacaaaaggaatgaatgttcagctttcacaa
atctcccagaagtaagagtgaatgtatcctaattagctttgtcaggtcag
ggtggccttgatataaccagactaagacactatgaaaacagagctatgtt
aacatttgcttaagaacttgacctcagaagctaacaaaaacactacagaa
caaaatcaagccatatcaatatatatacactgtatacaagcaggaattat
ctcaataacatataggatttttacttactttaatgtatttctttaaaaat
tttttttctaaactctttattagcgtatttttataaccaataatataatt
ccatatagaaatcaaccataatagcaaaactttcacttaatctcattagg
cacgcataaaaacatcagaaggggatccaatttcccttttttggttaaaa
tatataaagccaaattgaataacctagaaagaagatggggatttcttaat
cttgctagaccctcaagaagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92186929_92188047
seq2: B6Ng01-017J12.b_48_1152

seq1  GAATTCCTATCAAAACCCCACTGGTATAATGATAGTTTCAATGTGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCAAAACCCCACTGGTATAATGATAGTTTCAATGTGAGATG  50

seq1  TTTAAAAGACATATCTCTCTTCTCTGGTGTTCCATTTTCCAAATTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGACATATCTCTCTTCTCTGGTGTTCCATTTTCCAAATTTTCCA  100

seq1  TTACCCAGAGTGAACTGTGGTTTTAATATCTGGAATAAAAGATCCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGAGTGAACTGTGGTTTTAATATCTGGAATAAAAGATCCCTGAA  150

seq1  ATAAACAGGGCTTAAGTTATAAATTACACCCTAGTCCCAGTAATGGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGGGCTTAAGTTATAAATTACACCCTAGTCCCAGTAATGGTGAG  200

seq1  CTAAGACCTCAGGCTGTCCTGTTCCACCTGCCTGGGTGTGAGTCATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACCTCAGGCTGTCCTGTTCCACCTGCCTGGGTGTGAGTCATCTTC  250

seq1  CTGTACACCCTCCACAATGTCCATCACAGAAGCTCATTCTTAGGGGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACCCTCCACAATGTCCATCACAGAAGCTCATTCTTAGGGGTCAG  300

seq1  TCACGGAAGGGTGACTTTGTGTTCTCTCACTTAGCTGATCAGGCAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGAAGGGTGACTTTGTGTTCTCTCACTTAGCTGATCAGGCAGCCTT  350

seq1  TATGCCATAGCCTAAAGCAGTCACCTGATCTGGGCAGCCTTTTTCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATAGCCTAAAGCAGTCACCTGATCTGGGCAGCCTTTTTCTCAGT  400

seq1  TCATTTATTTCACTACCTCGCACTGTTCAACTCACTTCACCAAAGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTTCACTACCTCGCACTGTTCAACTCACTTCACCAAAGGGAAG  450

seq1  AGACATAGAGGCTAAGCTCTTTTGAGAGAGACACCCATTCTTGTTACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGAGGCTAAGCTCTTTTGAGAGAGACACCCATTCTTGTTACTTT  500

seq1  CGTCATAAAGTATGATCATACTTTTCTCTTTTACTAATAAGTTTTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATAAAGTATGATCATACTTTTCTCTTTTACTAATAAGTTTTTTCAA  550

seq1  AAACAGTTCAGTTCACCAGATTTATAAAATAAACTGTAACAGAAATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTCAGTTCACCAGATTTATAAAATAAACTGTAACAGAAATACAT  600

seq1  TAGTAGGACATGATTTCACATACATAGATCTCAGTAATGTCTACATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGACATGATTTCACATACATAGATCTCAGTAATGTCTACATTTGT  650

seq1  AGGTCTCTATCCGGGTCTTGGCCCATGTGACCCTTGCATAAAACACACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTATCCGGGTCTTGGCCCATGTGACCCTTGCATAAAACACACTT  700

seq1  CTCTGTATATACATTCACAGTTCTGCTTCTCTGAGCTGTAATAAGCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATATACATTCACAGTTCTGCTTCTCTGAGCTGTAATAAGCCCTT  750

seq1  GCAGTGATCTAGGCATTGGAATGCGAATATGCCTGACATTATGAGACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATCTAGGCATTGGAATGCGAATATGCCTGACATTATGAGACTTC  800

seq1  TACAACAAATGGCCTAGCCAGCCTCATTGCCATGTTTTTAATGGAAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAAATGGCCTAGCCAGCCTCATTGCCATGTTTTTAATGGAAAGTA  850

seq1  TTTAACGATGAAGAATGTTTTAAATTTATAATTTATGTCTTATTTTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACGATGAAGAATGTTTTAAATTTATAATTTATGTCTTATTTTTCTT  900

seq1  GGCATGTCATAATAATGAGAAACTCAACTTCCACTCAGAGGAAATACTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCATAATAATGAGAAACTCAACTTCCACTCAGAGGAAATACTCC  950

seq1  CTAAGGATGAATAGAGCTATCCCTTTGTGGGAGCCTCATTCTCGGGGCTC  1000
      || |||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  CT-AGGATG-ATAGAGCTATCCCTTTGTGGGAGCCTCATTCTC-GGGCTC  997

seq1  ACCAAGGTTTCTGTTTTCCAGTTATACTTTGCTTTTACTGCCTCCTCCTC  1050
      ||||||| ||||||||  |||||||||||||| |||||||    ||| ||
seq2  ACCAAGG-TTCTGTTT--CAGTTATACTTTGC-TTTACTG----CTCTTC  1039

seq1  CTCCTCCTTTCATACTGACTCATTCCTCTGTGAGAATCTGGGT-GTGTGA  1099
         |||  |||||||||||||| |||||||||| ||||||||| ||||||
seq2  --TCTCTCTTCATACTGACTCA-TCCTCTGTGA-AATCTGGGTGGTGTGA  1085

seq1  AGATGGGAACACCAGGGCCA  1119
       |||||||||||||||||||
seq2  GGATGGGAACACCAGGGCCA  1105

seq1: chr9_92358307_92359124
seq2: B6Ng01-017J12.g_69_892 (reverse)

seq1  AATGCTTCTTGGGGGTCTTGGCTAGATTAAAGAAAT-CCCATTCTCTTTC  49
      ||||||||||| ||||| | || ||||| ||||||| |||||  ||||||
seq2  AATGCTTCTTGAGGGTC-TAGCAAGATT-AAGAAATCCCCATCTTCTTTC  48

seq1  TAGGTTATCAAGTTTGGCTTTATAT-TTTTAACCAAAAAA-GGAAATTGG  97
      ||||||||  | ||||||||||||| |||||||||||||| |||||||||
seq2  TAGGTTATTCAATTTGGCTTTATATATTTTAACCAAAAAAGGGAAATTGG  98

seq1  ATCCC--TCTGATGTTTTTATTGCGTGCCTATTGAGATTAAGTG-AAGTT  144
      |||||  ||||||||||||| |||||||||| |||||||||||| |||||
seq2  ATCCCCTTCTGATGTTTTTA-TGCGTGCCTAATGAGATTAAGTGAAAGTT  147

seq1  TTGCTATATTGGTTGATTTCTATATGGAATTATATTATTGGTTATAAAAA  194
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTATGGTTGATTTCTATATGGAATTATATTATTGGTTATAAAAA  197

seq1  TACGCTAATAAAGGTTTTAG-AAAAAAATTTTTAAAGAAATACATTAAAG  243
      |||||||||||||  ||||| |||||||||||||||||||||||||||||
seq2  TACGCTAATAAAGAGTTTAGAAAAAAAATTTTTAAAGAAATACATTAAAG  247

seq1  TAAGT-AAAATCCTATATTGTTATTGAGATAATTCCTGCTTGTATACAGT  292
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAGTAAAAATCCTATA-TGTTATTGAGATAATTCCTGCTTGTATACAGT  296

seq1  GTATATATATTGATATGGCTTGATTTTGTTCTGTAGTG-TTTTGTTAGCT  341
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTATATATATTGATATGGCTTGATTTTGTTCTGTAGTGTTTTTGTTAGCT  346

seq1  TCTGAGGTCAAGTTCTTAAGC-AATGTTAACATAGCTCTGTTTTCATAGT  390
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTGAGGTCAAGTTCTTAAGCAAATGTTAACATAGCTCTGTTTTCATAGT  396

seq1  GTCTTAGTCTGGTTATATCAAGGCCACCCTGACCTGACAAAGCTAATTAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTCTGGTTATATCAAGGCCACCCTGACCTGACAAAGCTAATTAG  446

seq1  GATACATTCACTCTTACTTCTGGGAGATTTGTGAAAGCTGAACATTCATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTCACTCTTACTTCTGGGAGATTTGTGAAAGCTGAACATTCATT  496

seq1  CCTTTTGTAAAAGAATTTTGTAGTTTATCAGAGAAGTTCTATGTTCTTAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTAAAAGAATTTTGTAGTTTATCAGAGAAGTTCTATGTTCTTAG  546

seq1  TTTCTCCCTGTGGGAACGTCCTGCAATGCTGACTCATTGTCTTGCTATAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTGTGGGAACGTCCTGCAATGCTGACTCATTGTCTTGCTATAA  596

seq1  TTCTGTTCTTATTTCTGCTTCTTACCAAGTCACCTTTAGTGGTGGGTCCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTTATTTCTGCTTCTTACCAAGTCACCTTTAGTGGTGGGTCCT  646

seq1  TCTAGGAATCCTTATGTTACTTGGTTGATCTAAACTCTGTGTGTGTGTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATCCTTATGTTACTTGGTTGATCTAAACTCTGTGTGTGTGTGT  696

seq1  GTGTGTGTGTGTGTTTTCGTTTTCTATAGTAAGGACATTATAGTATGACC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTTTCGTTTTCTATAGTAAGGACATTATAGTATGACC  746

seq1  TTAAAAAATGAACAAAAGCAAAATTGACAGAATATGTGGTGGGGTTCAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATGAACAAAAGCAAAATTGACAGAATATGTGGTGGGGTTCAAA  796

seq1  CCCAGGACCTCACCCATGCTGAGAATTC  818
      ||||||||||||||||||||||||||||
seq2  CCCAGGACCTCACCCATGCTGAGAATTC  824