BAC Information

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BAC

Clone NameB6Ng01-018H17
Chromosome9 (Build37)
Map Location 57,817,077 - 57,895,380
singlet/doubletdoublet
Overlap geneCyp11a1, 4930535E21Rik
Upstream geneSnupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a
Downstream geneStra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018H17.bB6Ng01-018H17.g
ACCDH851874DH851875
length7171,007
definitionDH851874|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H17, 5' end.DH851875|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,894,664 - 57,895,380)(57,817,077 - 57,818,087)
sequence
gaattcctgccctgatttccctggacgatgtaagctgaaataaacccttt
tctccccaagctgcttttggccacaatgcttttatcacagcagtagagac
ctaactaagacacccattcagcccctctcggtcactgccagatgccattg
ggtgttccctgcctggaaagaccacaggacctgatgcatcagttgcattt
ctcgttgctgtgtgaaatccagacaaaagcatcttcaggaagaaagggtt
taacctgggttgtacggacggcgagggttcagtggacggccacaggaagc
acccgtcacgtcgcatccctagtgaggaagcagagatgagtgatgtcacc
caacttcctttctctgttttatttacctaggaccccagcttgtggaatgg
ggccacctatagttagggggattcttcccaacacaatcaacctaatctag
aaactgcctcacggatgtgacagaggtttgtctcctaggtaatcccagat
cctgtcaaattgacaaagtaaccaacacaggactaacactggctagggat
tcctgcaggaagactctcagggatagggagggtgaagtgtgaaggggata
gtgacgagaagaggctacgtgacaggccaggcacgaaggagcttttaagg
gacccttgagtctgggatgaagcctcaccaggtcaaggttatttttggtt
tctgtttgctcgaccat
gaattcaaagggtagcgggagcctggatcagttggtggcattgagtaaca
cactcaagaggcaaagagcggtgatcagatactgtcccagagtcctctct
ccacttatcacctaggctcccctgaccagggcgtggtctcacctctaatt
aacatagtctttcctcattaattaatctcatttccattctccataggcat
gcctagaggcccatctctcagatggttctagatggtgtcaggttggcaat
ccacaccggccaccacaggaacccagagtcacttctcagctgggtcaaac
tgtagccctaggagagttttcagattgggcctgggaatgaggaggtgtag
ggcctgttgcctaagccagcccttcctgaactccacctgtagactcttga
cctcatctggagacacccctaccccaggcctaagcacaggcaaagcaaga
agatgcaatgggacctctgccccctgtgatcagaggctcggtttgctact
gtctcaggctcattctctctgtgtgtccccccaccctcacccccgttttc
tcttgagcctgttttcttgttttcactcacgtgaaacacacatgggagag
gagaggggcagcacacgcttgcgcacaagcacacaggcaccaacatctgg
gctgctcacttgagtaaacacacagacatctgtgcacatgttcacttcag
tctgtcgcctttccagggtccttggggaatgtgtgtgtgtgaagctctct
ttgtatgctctctactgggaactggaagacacaggctgagaacaccattt
atacccagggcttagtggggaacactatgctgtggtaacctgccagcaaa
gagagtcaggggtctcttgaagcaagcagagaaataagccttgctggggg
tttgcttagatgtgctgaatcccacctgaaggtggggccaggggaatctt
gggatacaatctgcaggaaggtaatctgactttgtgtctccaccatggaa
ggttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_57894664_57895380
seq2: B6Ng01-018H17.b_44_759 (reverse)

seq1  TGGTCGAGCTTCCAGAAACCTGTATCTACCTTGGCCTGGTGAGGCTTCAT  50
      |||||||||   ||||||||   |   |||||| ||||||||||||||||
seq2  TGGTCGAGCAAACAGAAACCAAAAATAACCTTGACCTGGTGAGGCTTCAT  50

seq1  CCCAGGGCTCAAGGGTCCCTTGAGAGCTCCTTCGTGCCTGGCCTGTCACG  100
      |||| | |||||||||||||| | ||||||||||||||||||||||||||
seq2  CCCA-GACTCAAGGGTCCCTTAAAAGCTCCTTCGTGCCTGGCCTGTCACG  99

seq1  TAGCCTCTTCTCGTCACTATCCCCTTCACACTTCACCCTCCCTATCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTTCTCGTCACTATCCCCTTCACACTTCACCCTCCCTATCCCTG  149

seq1  AGAGTCTTCCTGCAGGAATCCCTAGCCAGTGTTAGTCCTGTGTTGGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCCTGCAGGAATCCCTAGCCAGTGTTAGTCCTGTGTTGGTTAC  199

seq1  TTTGTCAATTTGACAGGATCTGGGATTACCTAGGAGACAAACCTCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAATTTGACAGGATCTGGGATTACCTAGGAGACAAACCTCTGTCA  249

seq1  CATCCGTGAGGCAGTTTCTAGATTAGGTTGATTGTGTTGGGAAGAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTGAGGCAGTTTCTAGATTAGGTTGATTGTGTTGGGAAGAATCCC  299

seq1  CCTAACTATAGGTGGCCCCATTCCACAAGCTGGGGTCCTAGGTAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTATAGGTGGCCCCATTCCACAAGCTGGGGTCCTAGGTAAATAAA  349

seq1  ACAGAGAAAGGAAGTTGGGTGACATCACTCATCTCTGCTTCCTCACTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAAGGAAGTTGGGTGACATCACTCATCTCTGCTTCCTCACTAGG  399

seq1  GATGCGACGTGACGGGTGCTTCCTGTGGCCGTCCACTGAACCCTCGCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGACGTGACGGGTGCTTCCTGTGGCCGTCCACTGAACCCTCGCCGT  449

seq1  CCGTACAACCCAGGTTAAACCCTTTCTTCCTGAAGATGCTTTTGTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACAACCCAGGTTAAACCCTTTCTTCCTGAAGATGCTTTTGTCTGGA  499

seq1  TTTCACACAGCAACGAGAAATGCAACTGATGCATCAGGTCCTGTGGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACAGCAACGAGAAATGCAACTGATGCATCAGGTCCTGTGGTCTT  549

seq1  TCCAGGCAGGGAACACCCAATGGCATCTGGCAGTGACCGAGAGGGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGGGAACACCCAATGGCATCTGGCAGTGACCGAGAGGGGCTGA  599

seq1  ATGGGTGTCTTAGTTAGGTCTCTACTGCTGTGATAAAAGCATTGTGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTCTTAGTTAGGTCTCTACTGCTGTGATAAAAGCATTGTGGCCA  649

seq1  AAAGCAGCTTGGGGAGAAAAGGGTTTATTTCAGCTTACATCGTCCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTTGGGGAGAAAAGGGTTTATTTCAGCTTACATCGTCCAGGGA  699

seq1  AATCAGGGCAGGAATTC  717
      |||||||||||||||||
seq2  AATCAGGGCAGGAATTC  716

seq1: chr9_57817077_57818087
seq2: B6Ng01-018H17.g_70_1076

seq1  GAATTCAAAGGGTAGCGGGAGCCTGGATCAGTTGGTGGCATTGAGTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGTAGCGGGAGCCTGGATCAGTTGGTGGCATTGAGTAACA  50

seq1  CACTCAAGAGGCAAAGAGCGGTGATCAGATACTGTCCCAGAGTCCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGAGGCAAAGAGCGGTGATCAGATACTGTCCCAGAGTCCTCTCT  100

seq1  CCACTTATCACCTAGGCTCCCCTGACCAGGGCGTGGTCTCACCTCTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTATCACCTAGGCTCCCCTGACCAGGGCGTGGTCTCACCTCTAATT  150

seq1  AACATAGTCTTTCCTCATTAATTAATCTCATTTCCATTCTCCATAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTCTTTCCTCATTAATTAATCTCATTTCCATTCTCCATAGGCAT  200

seq1  GCCTAGAGGCCCATCTCTCAGATGGTTCTAGATGGTGTCAGGTTGGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAGGCCCATCTCTCAGATGGTTCTAGATGGTGTCAGGTTGGCAAT  250

seq1  CCACACCGGCCACCACAGGAACCCAGAGTCACTTCTCAGCTGGGTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCGGCCACCACAGGAACCCAGAGTCACTTCTCAGCTGGGTCAAAC  300

seq1  TGTAGCCCTAGGAGAGTTTTCAGATTGGGCCTGGGAATGAGGAGGTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTAGGAGAGTTTTCAGATTGGGCCTGGGAATGAGGAGGTGTAG  350

seq1  GGCCTGTTGCCTAAGCCAGCCCTTCCTGAACTCCACCTGTAGACTCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTGCCTAAGCCAGCCCTTCCTGAACTCCACCTGTAGACTCTTGA  400

seq1  CCTCATCTGGAGACACCCCTACCCCAGGCCTAAGCACAGGCAAAGCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTGGAGACACCCCTACCCCAGGCCTAAGCACAGGCAAAGCAAGA  450

seq1  AGATGCAATGGGACCTCTGCCCCCTGTGATCAGAGGCTCGGTTTGCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAATGGGACCTCTGCCCCCTGTGATCAGAGGCTCGGTTTGCTACT  500

seq1  GTCTCAGGCTCATTCTCTCTGTGTGTCCCCCCACCCTCACCCCCGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGCTCATTCTCTCTGTGTGTCCCCCCACCCTCACCCCCGTTTTC  550

seq1  TCTTGAGCCTGTTTTCTTGTTTTCACTCACGTGAAACACACATGGGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCCTGTTTTCTTGTTTTCACTCACGTGAAACACACATGGGAGAG  600

seq1  GAGAGGGGCAGCACACGCTTGCGCACAAGCACACAGGCACCAACATCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGCAGCACACGCTTGCGCACAAGCACACAGGCACCAACATCTGG  650

seq1  GCTGCTCACTTGAGTAAACACACAGACATCTGTGCACATGTTCACTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCACTTGAGTAAACACACAGACATCTGTGCACATGTTCACTTCAG  700

seq1  TCTGTCGCCTTTCCAGGGTCCTTGGGGAATGTGTGTGTGTGAAGCTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCGCCTTTCCAGGGTCCTTGGGGAATGTGTGTGTGTGAAGCTCTCT  750

seq1  TTGTATGCTCTCTACTGGGAACTGGAAGACACAGGCTGAGAACACCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTATGCTCTCTACTGGGAACTGGAAGACACAGGCTGAGAACACCATTT  800

seq1  ATACCCAGGGCTTTAGTGGGGAACACTAGGCTGTGGTAACCTGCCAGCAA  850
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  ATACCCAGGGC-TTAGTGGGGAACACTATGCTGTGGTAACCTGCCAGCAA  849

seq1  AGAGAGTCAGGGGTCTCTTGGAAGCAAGCAGAGAAGTAAGCCTTTGCTGG  900
      ||||||||||||||||||| ||||||||||||||| |||||| |||||||
seq2  AGAGAGTCAGGGGTCTCTT-GAAGCAAGCAGAGAAATAAGCC-TTGCTGG  897

seq1  GGGTTTGCTTAGATGTGCTGTAGCCCACCTGAGGCTGGGGCCAGGGGAAC  950
      |||||||||||||||||||| | ||||||||| | |||||||||||||| 
seq2  GGGTTTGCTTAGATGTGCTGAATCCCACCTGAAGGTGGGGCCAGGGGAAT  947

seq1  ACTGGACTACAATCTGCAGGAAGGAAGTCTGACTATGTGTCCCACCCATG  1000
        |||  ||||||||||||||||| | ||||||| |||||| |  |||||
seq2  CTTGGGATACAATCTGCAGGAAGGTAATCTGACTTTGTGTCTCCACCATG  997

seq1  GAAGGCTTGGG  1011
      ||||| |||||
seq2  GAAGG-TTGGG  1007