BAC Information

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BAC

Clone NameB6Ng01-018K22
Chromosome9 (Build37)
Map Location 114,614,764 - 114,778,746
singlet/doubletdoublet
Overlap geneDync1li1, Cmtm6, Cmtm7, Cmtm8
Upstream genePdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772
Downstream geneGpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018K22.bB6Ng01-018K22.g
ACCDH852013DH852014
length1,120939
definitionDH852013|Mus musculus domesticus DNA, BAC clone: B6Ng01-018K22, 5' end.DH852014|Mus musculus domesticus DNA, BAC clone: B6Ng01-018K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,614,764 - 114,615,888)(114,777,953 - 114,778,746)
sequence
gaattcactttgtagaccaggctggccttgaactcagaaatctgcctccc
atgtgctgggactaaaggcgtgcacctccctgcccagcttttttttttgg
tacagctctgtctgttgatggtaagatataaacataatatttactgtttt
gaccttgattaaggagtaggataaaggaaggaggctctcatcctgtagct
gcctgttacatcatgtcaaccctttctgaacggtcacatttgacccaaag
agtaaaccttcatcaatgccaacagacatctcctgtgtataattaaatga
cttaatagtgctgttaaaagaaactgtggcttcttttgttttgttttgtt
ttgttttgtagatcaaacaagatgtaatgtatggatcttagatggagatc
tgtaccacaaagggctactcaagttctctctggatgccctttctctgagg
gacactctggtcatgttggttgttgatatgtcaaagccttggactgcttt
ggattccttacagaaatgggcaagtgtggtgagagaacatgtcgacaagc
tgaaaatcccccctgaagagatgaaggaaatggagcagaagtgtgagtgg
ccagaaaatgctaatgtgggctcccattgaaatatcttagcaggctataa
aaatcagacatgctaatgtgggcttccattgagatatcttagctgactat
aaaagccattccaattgttttctctacaaacaagattcagtgaaggaaat
acaatatgactaccattttgaaatttaatttgaatgatttgtagagtttt
attatttaatatacataatggtaaattctttggtagaagtatgttttact
cttgtcaaatgactatgtgtcttcattttgaaaggtcatttttacttgta
aaaatgtgagccttgtcttcagtcatcacttccagcatttttgtgactgt
tagcttattaacttttgttatatgaaatgtgcatgaaagatgtaacataa
ttaaaagatgttaagttggtatttacgagttcattagagtgtggggtgac
tttgccgtggcagcatttcctctctttcccccagttcatgtttgtggcta
gaaccatgctgtgctctgct
gaattctacatcttcatctgaaagctgatagcagaatactggcttccagg
cagttaggatgagggtcttaaagcccacacccacagtgacacacctactc
caacagaaccacaacttctaatagagccactccctgggctgagcatatac
aaaccatcacaatggcctagaaatttatgcataaataatcagtccccaag
tcattattcaggaactggggcatgggtggaaaagaccaaggttacaagta
ttatattttaaaaatttatttatttattttatgtatatgagtacactgta
gctgtacagagggctgtgagccattatgtggttcctgagaattgaactca
ggatctctattcgctccagccccactcgctccggccccaagatttattta
ttgttatatgtaagtacactgcagctctcttcagacacaccagaagaggg
cgtcagatctcattacagatggttgttagccaccactgctgggatttgaa
ctcaggaccttcagaagagcagacagtgctcttaacctctgagccatctc
tccagccctacaaatattattaagaataaaggaaagaaagaaaagaaaga
aggaagggaagaagggagaaaggaaaggaggaaagaaaggagggagggat
ggacggacggctgaccatgtgcaatgctctcctcctttaatcttagcgct
cagaagcggtaacaggtaatccatatgggttcacatatagcctggtctat
tttgtgatttctggctatataatgagattccgtcttagaaacactacaaa
aacaaaatcagccaacaaccaaaagctttgggatctatggattgtgatcg
aatgtgatttatacacccacaaatgagaaatgaaagtacctttgtgttta
tgtacatgagcaaaatacatttatctaggtattagtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_114614764_114615888
seq2: B6Ng01-018K22.b_46_1165

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTCCC  50

seq1  ATGTGCTGGGACTAAAGGCGTGCACCTCCCTGCCCAGCTTTTTTTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGGGACTAAAGGCGTGCACCTCCCTGCCCAGCTTTTTTTTTTGG  100

seq1  TACAGCTCTGTCTGTTGATGGTAAGATATAAACATAATATTTACTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTCTGTCTGTTGATGGTAAGATATAAACATAATATTTACTGTTTT  150

seq1  GACCTTGATTAAGGAGTAGGATAAAGGAAGGAGGCTCTCATCCTGTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGATTAAGGAGTAGGATAAAGGAAGGAGGCTCTCATCCTGTAGCT  200

seq1  GCCTGTTACATCATGTCAACCCTTTCTGAACGGTCACATTTGACCCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTACATCATGTCAACCCTTTCTGAACGGTCACATTTGACCCAAAG  250

seq1  AGTAAACCTTCATCAATGCCAACAGACATCTCCTGTGTATAATTAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCTTCATCAATGCCAACAGACATCTCCTGTGTATAATTAAATGA  300

seq1  CTTAATAGTGCTGTTAAAAGAAACTGTGGCTTCTTTTGTTTTGTTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAGTGCTGTTAAAAGAAACTGTGGCTTCTTTTGTTTTGTTTTGTT  350

seq1  TTGTTTTGTAGATCAAACAAGATGTAATGTATGGATCTTAGATGGAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTAGATCAAACAAGATGTAATGTATGGATCTTAGATGGAGATC  400

seq1  TGTACCACAAAGGGCTACTCAAGTTCTCTCTGGATGCCCTTTCTCTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACAAAGGGCTACTCAAGTTCTCTCTGGATGCCCTTTCTCTGAGG  450

seq1  GACACTCTGGTCATGTTGGTTGTTGATATGTCAAAGCCTTGGACTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCTGGTCATGTTGGTTGTTGATATGTCAAAGCCTTGGACTGCTTT  500

seq1  GGATTCCTTACAGAAATGGGCAAGTGTGGTGAGAGAACATGTCGACAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCTTACAGAAATGGGCAAGTGTGGTGAGAGAACATGTCGACAAGC  550

seq1  TGAAAATCCCCCCTGAAGAGATGAAGGAAATGGAGCAGAAGTGTGAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCCCCCCTGAAGAGATGAAGGAAATGGAGCAGAAGTGTGAGTGG  600

seq1  CCAGAAAATGCTAATGTGGGCTCCCATTGAAATATCTTAGCAGGCTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATGCTAATGTGGGCTCCCATTGAAATATCTTAGCAGGCTATAA  650

seq1  AAATCAGACATGCTAATGTGGGCTTCCATTGAGATATCTTAGCTGACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGACATGCTAATGTGGGCTTCCATTGAGATATCTTAGCTGACTAT  700

seq1  AAAAGCCATTCCAATTGTTTTCTCTACAAACAAGATTCAGTGAAGGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATTCCAATTGTTTTCTCTACAAACAAGATTCAGTGAAGGAAAT  750

seq1  ACAATATGACTACCATTTTGAAATTTAATTTGAATGATTTGTAGAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGACTACCATTTTGAAATTTAATTTGAATGATTTGTAGAGTTTT  800

seq1  ATTATTTAATATACATAATGGTAAATTCTTTGGTAGAAGTATGTTTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAATATACATAATGGTAAATTCTTTGGTAGAAGTATGTTTTACT  850

seq1  CTTGTCAAATGACTATGTGTCTTCATTTTGAAAGGTCATTTTTACTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAAATGACTATGTGTCTTCATTTTGAAAGGTCATTTTTACTTGTA  900

seq1  AAAATGTGAGCC-TGTCTTCAGGTCATCACTTCCAGCATTTTTGTGACTG  949
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  AAAATGTGAGCCTTGTCTTCA-GTCATCACTTCCAGCATTTTTGTGACTG  949

seq1  TTAGCTTATTAACTTTGTTAATATGAAATGTGCATGAAAAGATGTTAACA  999
      ||||||||||||||||  | |||||||||||||||| ||||||| |||||
seq2  TTAGCTTATTAACTTTTGTTATATGAAATGTGCATG-AAAGATG-TAACA  997

seq1  TAATAAAAAGATGTTAAGTTGGTATTTACAGAGTTCATTAGAGTGT-GGG  1048
      |||| |||||||||||||||||||||||| |||||||||||||||| |||
seq2  TAATTAAAAGATGTTAAGTTGGTATTTAC-GAGTTCATTAGAGTGTGGGG  1046

seq1  TGACTTTGCCTGTGCAGTCATTTCCTCTCTTCCCCTCAGTCCATGCTTGT  1098
      ||||||||||   |||| ||||||||||||| ||| |||| |||| ||||
seq2  TGACTTTGCCGTGGCAG-CATTTCCTCTCTTTCCCCCAGTTCATGTTTGT  1095

seq1  -GCTAGAACCATTGCTGTGTGCTCTGCT  1125
       |||||||||| |||  |||||||||||
seq2  GGCTAGAACCA-TGC--TGTGCTCTGCT  1120

seq1: chr9_114777953_114778746
seq2: B6Ng01-018K22.g_215_1006 (reverse)

seq1  ATGACTTAATAACCTAGATAAATGTATTTTGCTCATGTACATAAAACACA  50
      ||||| |||| ||||||||||||||||||||||||||||||| |||||||
seq2  ATGAC-TAAT-ACCTAGATAAATGTATTTTGCTCATGTACAT-AAACACA  47

seq1  AAGGTACTTTCATTTTCTCATTTGT-GGTGTATAAATCACATTCGATCAC  99
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  AAGGTACTTTCA-TTTCTCATTTGTGGGTGTATAAATCACATTCGATCAC  96

seq1  AATCCATAGAT-CCAAAGCTTTTGGTTGTTGGCTGATTTTGTTTTTGTTG  148
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  AATCCATAGATCCCAAAGCTTTTGGTTGTTGGCTGATTTTGTTTTTGTAG  146

seq1  TGTTTCTAAGACGGAATCTCATTATATAGCCAGAAATCACAAAATAGACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAAGACGGAATCTCATTATATAGCCAGAAATCACAAAATAGACC  196

seq1  AGGCTATATGTGAACCCATATGGATTACCTGTTACCGCTTCTGAGCGCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATATGTGAACCCATATGGATTACCTGTTACCGCTTCTGAGCGCTA  246

seq1  AGATTAAAGGAGGAGAGCATTGCACATGGTCAGCCGTCCGTCCATCCCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAGGAGGAGAGCATTGCACATGGTCAGCCGTCCGTCCATCCCTC  296

seq1  CCTCCTTTCTTTCCTCCTTTCCTTTCTCCCTTCTTCCCTTCCTTCTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTCTTTCCTCCTTTCCTTTCTCCCTTCTTCCCTTCCTTCTTTCT  346

seq1  TTTCTTTCTTTCCTTTATTCTTAATAATATTTGTAGGGCTGGAGAGATGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCCTTTATTCTTAATAATATTTGTAGGGCTGGAGAGATGG  396

seq1  CTCAGAGGTTAAGAGCACTGTCTGCTCTTCTGAAGGTCCTGAGTTCAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTTAAGAGCACTGTCTGCTCTTCTGAAGGTCCTGAGTTCAAAT  446

seq1  CCCAGCAGTGGTGGCTAACAACCATCTGTAATGAGATCTGACGCCCTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGTGGTGGCTAACAACCATCTGTAATGAGATCTGACGCCCTCTT  496

seq1  CTGGTGTGTCTGAAGAGAGCTGCAGTGTACTTACATATAACAATAAATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGAAGAGAGCTGCAGTGTACTTACATATAACAATAAATAA  546

seq1  ATCTTGGGGCCGGAGCGAGTGGGGCTGGAGCGAATAGAGATCCTGAGTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGGCCGGAGCGAGTGGGGCTGGAGCGAATAGAGATCCTGAGTTC  596

seq1  AATTCTCAGGAACCACATAATGGCTCACAGCCCTCTGTACAGCTACAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAGGAACCACATAATGGCTCACAGCCCTCTGTACAGCTACAGTG  646

seq1  TACTCATATACATAAAATAAATAAATAAATTTTTAAAATATAATACTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATATACATAAAATAAATAAATAAATTTTTAAAATATAATACTTGT  696

seq1  AACCTTGGTCTTTTCCACCCATGCCCCAGTTCCTGAATAATGACTTGGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGTCTTTTCCACCCATGCCCCAGTTCCTGAATAATGACTTGGGG  746

seq1  ACTGATTATTTATGCATAAATTTCTAGGCCATTGTGATGGTTTGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTATTTATGCATAAATTTCTAGGCCATTGTGATGGTTTGTA  792