BAC Information

Click to search

BAC

Clone NameB6Ng01-019I15
Chromosome11 (Build37)9 (Build37)
Map Location 9,986,529 - 9,987,62576,678,621 - 76,679,018
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUpp1, LOC626887, LOC100041469, Abca13, LOC665435
Downstream geneLOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019I15.bB6Ng01-019I15.g
ACCDH852596DH852597
length1,086512
definitionDH852596|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I15, 5' end.DH852597|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,986,529 - 9,987,625)(76,678,621 - 76,679,018)
sequence
gaattcagcatcttcagagacttcaaatcttagctgaagaacagtgggat
cgccaagaatcttccagtcatttatcctcatggactgagcagattccagg
tatgagactttccaaattttatcatgtaagccaatctaaagaatctcctt
tcaaagtatatttatccaatcagttctattcaggtagacaaaagtacacc
atgtcaaggggaatttgcccccaggaatggattgataaatagttagcttc
caaataaaagatttcaatcccctctctcctccttctcctattttgtgttt
ttacccctcacacttttggatatgagatgatagagagggaggccctcacc
aagatgctatcattacaatagtctcaacctcctcgtaaatgagaactaaa
tttccttctcttgtaaatgtcccacccagactgttgtactctgttatagc
aacataaaccagaataaaataaatagaagaggcttaataatgatcacaag
taaattgaaagaacaaataaaatgccaagaccgagaaaaaaattgagctg
caaatagaaaatattctacttactcttgggctacaagtgaaagataggct
aagagaatagaagagttaagacctaaagttgcctaaactacactgactaa
tcactaaattactcagcatgaggctttggattgattctgttaggaatcat
tggttgccatgattccctcatggaacagttagaatgtattaaggtctgca
ctggagtatactagacaggcttaaggaggaaacaaagactcccaagagct
tggccttgtgaactgttccttctaaatcttgaatctagtactaatggaag
gagtggcagagatgtggaaaataaggctcatggggtggcactgcagtgtt
ccattttgtcacagactattaagccaacgatcactgtctgcaatcccaca
accctgaacatgccattaaccacattgctcacaaacaaacaattgctagg
tccatttcaagtgggcattaaaatactgctcatcagcatcctaccaagta
gatacattcattaaatttgtggtcccttgcatggcc
atagaattggctaaactgctggccaacaaatccaagggttctgtggtctt
ttcttatcagcattgagattacaggcacattaatggtacaactggctatt
ttattttcatgagctctgagactccaaactcgggactttcagctttcaaa
gtaaattgagtcatctcataatccatcaaacatattttatttgcatttgt
ttcatgttataatttaattgcttatctctctcccttcctccctccatacc
ctcacatattccctttctcccttctccttcaaattaatggattctctttt
cactaattgttattgcatacatatatgtatgcatatatatatatatgtta
cacacatatataaccacatattatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatttac
atagatagatatatatatatatatatatatatatatatatatatatatat
agaaaaaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9986529_9987625
seq2: B6Ng01-019I15.b_42_1127

seq1  GAATTCAGCATCTTCAGAGACTTCAAATCTTAGCTGAAGAACAGTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCTTCAGAGACTTCAAATCTTAGCTGAAGAACAGTGGGAT  50

seq1  CGCCAAGAATCTTCCAGTCATTTATCCTCATGGACTGAGCAGATTCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGAATCTTCCAGTCATTTATCCTCATGGACTGAGCAGATTCCAGG  100

seq1  TATGAGACTTTCCAAATTTTATCATGTAAGCCAATCTAAAGAATCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACTTTCCAAATTTTATCATGTAAGCCAATCTAAAGAATCTCCTT  150

seq1  TCAAAGTATATTTATCCAATCAGTTCTATTCAGGTAGACAAAAGTACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTATATTTATCCAATCAGTTCTATTCAGGTAGACAAAAGTACACC  200

seq1  ATGTCAAGGGGAATTTGCCCCCAGGAATGGATTGATAAATAGTTAGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAGGGGAATTTGCCCCCAGGAATGGATTGATAAATAGTTAGCTTC  250

seq1  CAAATAAAAGATTTCAATCCCCTCTCTCCTCCTTCTCCTATTTTGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAGATTTCAATCCCCTCTCTCCTCCTTCTCCTATTTTGTGTTT  300

seq1  TTACCCCTCACACTTTTGGATATGAGATGATAGAGAGGGAGGCCCTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCTCACACTTTTGGATATGAGATGATAGAGAGGGAGGCCCTCACC  350

seq1  AAGATGCTATCATTACAATAGTCTCAACCTCCTCGTAAATGAGAACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTATCATTACAATAGTCTCAACCTCCTCGTAAATGAGAACTAAA  400

seq1  TTTCCTTCTCTTGTAAATGTCCCACCCAGACTGTTGTACTCTGTTATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTCTTGTAAATGTCCCACCCAGACTGTTGTACTCTGTTATAGC  450

seq1  AACATAAACCAGAATAAAATAAATAGAAGAGGCTTAATAATGATCACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAACCAGAATAAAATAAATAGAAGAGGCTTAATAATGATCACAAG  500

seq1  TAAATTGAAAGAACAAATAAAATGCCAAGACCGAGAAAAAAATTGAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAAGAACAAATAAAATGCCAAGACCGAGAAAAAAATTGAGCTG  550

seq1  CAAATAGAAAATATTCTACTTACTCTTGGGCTACAAGTGAAAGATAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAAAATATTCTACTTACTCTTGGGCTACAAGTGAAAGATAGGCT  600

seq1  AAGAGAATAGAAGAGTTAAGACCTAAAGTTGCCTAAACTACACTGACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATAGAAGAGTTAAGACCTAAAGTTGCCTAAACTACACTGACTAA  650

seq1  TCACTAAATTACTCAGCATGAGGCTTTGGATTGATTCTGTTAGGAATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAATTACTCAGCATGAGGCTTTGGATTGATTCTGTTAGGAATCAT  700

seq1  TGGTTGCCATGATTCCCTCATGGAACAGTTAGAATGTATTAAGGTCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCATGATTCCCTCATGGAACAGTTAGAATGTATTAAGGTCTGCA  750

seq1  CTGGAGTATACTAGACAGGCTTAAGGAGGAAACAAAGACTCCCAAGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTATACTAGACAGGCTTAAGGAGGAAACAAAGACTCCCAAGAGCT  800

seq1  TGGCCTTGTGAACTGTTCCTTCTAAAATCTTGAATCTAGTACTAATGGAA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGCCTTGTGAACTGTTCCTTCT-AAATCTTGAATCTAGTACTAATGGAA  849

seq1  GGAGTGGCAGAGATGTGGAAAATAAGGCTCATGGGGTGGCACTGCAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGCAGAGATGTGGAAAATAAGGCTCATGGGGTGGCACTGCAGTGT  899

seq1  TCCATTTTGTCACAGACTA-TAAGCCAACGATCACTGTTCTGCAATCCCA  949
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TCCATTTTGTCACAGACTATTAAGCCAACGATCACTG-TCTGCAATCCCA  948

seq1  CAACCCTGAAACATGCCATTAACCACATTGCTCACCAAACCAAACAATTG  999
      |||||||| ||||||||||||||||||||||||||  || ||||||||||
seq2  CAACCCTG-AACATGCCATTAACCACATTGCTCAC--AAACAAACAATTG  995

seq1  CTAGGTCCATTTCCAAGT-GGCATTATAAATACTGGCTCAATCAGCATTC  1048
      |||||||||||| ||||| ||||||| ||||||| |||| ||||||| ||
seq2  CTAGGTCCATTT-CAAGTGGGCATTA-AAATACT-GCTC-ATCAGCA-TC  1040

seq1  ATACCAAGTAAAATACATCTATTAAAATTTTGTGTCCCTTGTCATGGCC  1097
       |||||||| | ||||||  |||||| || || |||||||| |||||||
seq2  CTACCAAGT-AGATACATTCATTAAATTTGTG-GTCCCTTG-CATGGCC  1086

seq1: chr9_76678621_76679018
seq2: B6Ng01-019I15.g_394_585 (reverse)

seq1  TATATTTTATAAATATATATATGTTTGTCTCTACATACATATATATATAT  50
      |||||||| |  |||||||||        | || ||| ||||||||||||
seq2  TATATTTTTTCTATATATATA--------TATATATATATATATATATAT  42

seq1  ATATATATATATCTAAATGTATGTATATGTATATATATATATATATATAT  100
      ||||||||||||||  || |||||| || |||||||||||||||||||||
seq2  ATATATATATATCT--ATCTATGTAAATATATATATATATATATATATAT  90

seq1  ACACACTATACACACACATAATACACACATAATGTATTATATATTTATAT  150
      | | | |||| | | | |||                 ||||||| |||||
seq2  ATATA-TATATATATATATA-----------------TATATATATATAT  122

seq1  -TATTTATATATGTAGAGAATATGGAGAAATGCTCCTTACTAGTTGCTAT  199
       ||| ||||||| || | ||||||                | |||  |||
seq2  ATATATATATATATATATAATATG----------------TGGTT-ATAT  155

seq1  GTGTGTGTATATATATATATATATATGTGTGTGTGTATAATATATATATA  249
       |||||||| | |||||||||||||||            ||| |||||| 
seq2  ATGTGTGTA-ACATATATATATATATG-----------CATACATATAT-  192

seq1  ATATATATAATATATTCTTTACATATACATTTATGTATATTTCTACATAC  299
                                                        
seq2  --------------------------------------------------  192

seq1  AAATATATCTACATGTATATATCTACATAAATATATATCATACATTTATA  349
                                                        
seq2  --------------------------------------------------  192

seq1  TATCTACATGTATATATATCTGCATGTATCATACTTAACATACATATAT  398
                                                       
seq2  -------------------------------------------------  192