BAC Information

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BAC

Clone NameB6Ng01-020C23
Chromosome9 (Build37)
Map Location 30,891,833 - 31,030,244
singlet/doubletdoublet
Overlap geneSt14, Aplp2
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156
Downstream geneEG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020C23.bB6Ng01-020C23.g
ACCDH853055DH853056
length1,133855
definitionDH853055|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C23, 5' end.DH853056|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,029,109 - 31,030,244)(30,891,833 - 30,892,682)
sequence
gaattcattctaaaagaattataatggctggcacaagaaagttttgaaag
tgttatagctattacattgatgggagcattagtattttaagtgaagagta
tagcaactaccctatctacttaacaatggattgttaataagacacagaaa
aaaaaaggggagggatctattgctccccatattataagaggaatacatgt
tcattatagaaaatataatatgttgagaagactaaagcaactgcttatca
tcctgctatccagaaaaattagtatgttggcttattttcttctcgtttac
tttaaatgcataattaaaatcactgtatgtatgcagtttacattacattt
taaaataatttatcatatcttcctgagtatggtgacttactcctataatc
ctagcactaagaggcagaagcaggaggaacaggagtttgaggacagcttg
ggttttatactaagttcagagacagcctgggtacatagtaggacttgtgt
ctcagggaaaccaaggactagaaagagaacttaattgcacagtacttgcc
cagctctgggctctgtcttcaacttcaaaataaggaagtaagtaactaat
ttctcaaatgtattttaaaatgtttattctcatcatcgattattttccta
gactggagtcctaggaatgaagtgaccgagctgtacagggtacatatgaa
actatgaaaatatgaaacattttgaatgtatacaaaacaaatttgtaatt
tgaaaaatcactgttcagaatgagctattgtcctattgccatctcgggcc
ccaacactttctactctcccaaacaatgatctatgagtccctaccattct
gaaccaagcacttacttaagttcagtgtactgagctaaacacatgtagct
aaaattccttcccttgggttgaggtaaacaaggtctaccctccattccca
aaggctcatgacaaactgacatatgaaggcagagttcagggtgaggactc
caggagttatcctgcttccttacgaaggtaagaaaagaaggttactaact
tgtgggtggtgggtgcctcttttcccagcagctattactaaagatctttg
actcagcagaacaaagcttctctgaaaaactgt
gaattcccctgttgagttaagcaagaccatatggagtggcagaaagctgg
cgcacagataagctgttatggatcacgggtgtggtggaagaagctacgat
aacctcgaaggcgaagacgacgtgtgggggaagcatatgagctaagagga
agggaaagttgagcccatgccccaggaaagcagggccctcctgctggaag
atgctgagacaacggaacagaccgacaacaacggagcctatccacctacg
cctggaaacacgggctttttaggaaatgaagggaggtgaatggaaagggc
gtggcatacagctgcaggcagaggatgacagaactgggatggagaggtgg
gggacaggatgacctcactgaaacctggagttgggagtctccattaaata
ttctccctgcgggtctacaaatctggcggccattagtgtgacatacacat
ctgctccgtgcggcattggacagtcattctgtgagcggcagggctgcttg
cttcctgtgtcccgctttccacggtctctgtgtcatgagctcaaaagagt
tgtctcagagcagagctgggccacagctgtcactaggacttgctggcagg
ggtttgcaagcacctgtcacctctgcacctgccagagtcatgcgtgtctc
tccatggaaagcaagcttgcaccatcttttttttttaattaattattaat
taattaaattaatttattattttatatgagtacactgtagctgtcttcag
acaacacgagaagagggcgttagatcccattacagatggttgtgagccaa
ccattgtggttgcttgggaattgaactcatgaacccctggaagagcagta
gtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_31029109_31030244
seq2: B6Ng01-020C23.b_40_1172 (reverse)

seq1  ACAGCTTTTTCAGGGAAGCCTTTGTCTTGCTGGGTCAAAGATCTCTAGTA  50
      |||| |||||||| |||| ||||||  ||||| ||||||||||| |||||
seq2  ACAG-TTTTTCAGAGAAG-CTTTGTTCTGCTGAGTCAAAGATCTTTAGTA  48

seq1  CTAGCCTGCTGGGGAAAGA-GCCCCCA-CACACACCAGTTAGTAACC-TC  97
       ||| |||||||| ||||| || |||| ||| ||| ||||||||||| ||
seq2  ATAG-CTGCTGGGAAAAGAGGCACCCACCACCCACAAGTTAGTAACCTTC  97

seq1  TTTTCTACCCTCTGTAAGGAAGCGGGATAAACTCCCTGAGTCCTCCACCA  147
      ||||||  |||  |||||||||| |||| ||||||  ||||||| |||| 
seq2  TTTTCTTACCTTCGTAAGGAAGCAGGAT-AACTCCTGGAGTCCT-CACCC  145

seq1  TGAACTCTGGCCTCATATGTCAGTTTGTCATTGAGCCTTTGGGAATGGAG  197
      ||||||||| | |||||||||||||||||| |||||||||||||||||||
seq2  TGAACTCTGCCTTCATATGTCAGTTTGTCA-TGAGCCTTTGGGAATGGAG  194

seq1  GGTAGACCTTGTTTACCTCAACCCAAGGGAAGGAATTTTAGCTACATGTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACCTTGTTTACCTCAACCCAAGGGAAGGAATTTTAGCTACATGTG  244

seq1  TTTAGCTCAGTACACTGAACTTAAGTAAGTGCTTGGTTCAGAATGGTAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCAGTACACTGAACTTAAGTAAGTGCTTGGTTCAGAATGGTAGG  294

seq1  GACTCATAGATCATTGTTTGGGAGAGTAGAAAGTGTTGGGGCCCGAGATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATAGATCATTGTTTGGGAGAGTAGAAAGTGTTGGGGCCCGAGATG  344

seq1  GCAATAGGACAATAGCTCATTCTGAACAGTGATTTTTCAATTTACAAATT  397
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCAATAGGACAATAGCTCATTCTGAACAGTGATTTTTCAAATTACAAATT  394

seq1  TGTTTTGTATACATTCAAAATGTTTCATATTTTCATAGTTTCATATGTAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTATACATTCAAAATGTTTCATATTTTCATAGTTTCATATGTAC  444

seq1  CCTGTACAGCTCGGTCACTTCATTCCTAGGACTCCAGTCTAGGAAAATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACAGCTCGGTCACTTCATTCCTAGGACTCCAGTCTAGGAAAATAA  494

seq1  TCGATGATGAGAATAAACATTTTAAAATACATTTGAGAAATTAGTTACTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGATGAGAATAAACATTTTAAAATACATTTGAGAAATTAGTTACTT  544

seq1  ACTTCCTTATTTTGAAGTTGAAGACAGAGCCCAGAGCTGGGCAAGTACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTATTTTGAAGTTGAAGACAGAGCCCAGAGCTGGGCAAGTACTG  594

seq1  TGCAATTAAGTTCTCTTTCTAGTCCTTGGTTTCCCTGAGACACAAGTCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAAGTTCTCTTTCTAGTCCTTGGTTTCCCTGAGACACAAGTCCT  644

seq1  ACTATGTACCCAGGCTGTCTCTGAACTTAGTATAAAACCCAAGCTGTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTACCCAGGCTGTCTCTGAACTTAGTATAAAACCCAAGCTGTCCT  694

seq1  CAAACTCCTGTTCCTCCTGCTTCTGCCTCTTAGTGCTAGGATTATAGGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCTGTTCCTCCTGCTTCTGCCTCTTAGTGCTAGGATTATAGGAG  744

seq1  TAAGTCACCATACTCAGGAAGATATGATAAATTATTTTAAAATGTAATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACCATACTCAGGAAGATATGATAAATTATTTTAAAATGTAATGT  794

seq1  AAACTGCATACATACAGTGATTTTAATTATGCATTTAAAGTAAACGAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCATACATACAGTGATTTTAATTATGCATTTAAAGTAAACGAGAA  844

seq1  GAAAATAAGCCAACATACTAATTTTTCTGGATAGCAGGATGATAAGCAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGCCAACATACTAATTTTTCTGGATAGCAGGATGATAAGCAGT  894

seq1  TGCTTTAGTCTTCTCAACATATTATATTTTCTATAATGAACATGTATTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGTCTTCTCAACATATTATATTTTCTATAATGAACATGTATTCC  944

seq1  TCTTATAATATGGGGAGCAATAGATCCCTCCCCTTTTTTTTTCTGTGTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAATATGGGGAGCAATAGATCCCTCCCCTTTTTTTTTCTGTGTCT  994

seq1  TATTAACAATCCATTGTTAAGTAGATAGGGTAGTTGCTATACTCTTCACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAATCCATTGTTAAGTAGATAGGGTAGTTGCTATACTCTTCACT  1044

seq1  TAAAATACTAATGCTCCCATCAATGTAATAGCTATAACACTTTCAAAACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTAATGCTCCCATCAATGTAATAGCTATAACACTTTCAAAACT  1094

seq1  TTCTTGTGCCAGCCATTATAATTCTTTTAGAATGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGCCAGCCATTATAATTCTTTTAGAATGAATTC  1133

seq1: chr9_30891833_30892682
seq2: B6Ng01-020C23.g_70_924

seq1  GAATTCCCCTGTTGAGTTAAGCAAGACCATATGGAGTGGCAGAAAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGTTGAGTTAAGCAAGACCATATGGAGTGGCAGAAAGCTGG  50

seq1  CGCACAGATAAGCTGTTATGGATCACGGGTGTGGTGGAAGAAGCTACGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAGATAAGCTGTTATGGATCACGGGTGTGGTGGAAGAAGCTACGAT  100

seq1  AACCTCGAAGGCGAAGACGACGTGTGGGGGAAGCATATGAGCTAAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCGAAGGCGAAGACGACGTGTGGGGGAAGCATATGAGCTAAGAGGA  150

seq1  AGGGAAAGTTGAGCCCATGCCCCAGGAAAGCAGGGCCCTCCTGCTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGTTGAGCCCATGCCCCAGGAAAGCAGGGCCCTCCTGCTGGAAG  200

seq1  ATGCTGAGACAACGGAACAGACCGACAACAACGGAGCCTATCCACCTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGACAACGGAACAGACCGACAACAACGGAGCCTATCCACCTACG  250

seq1  CCTGGAAACACGGGCTTTTTAGGAAATGAAGGGAGGTGAATGGAAAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAACACGGGCTTTTTAGGAAATGAAGGGAGGTGAATGGAAAGGGC  300

seq1  GTGGCATACAGCTGCAGGCAGAGGATGACAGAACTGGGATGGAGAGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATACAGCTGCAGGCAGAGGATGACAGAACTGGGATGGAGAGGTGG  350

seq1  GGGACAGGATGACCTCACTGAAACCTGGAGTTGGGAGTCTCCATTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGATGACCTCACTGAAACCTGGAGTTGGGAGTCTCCATTAAATA  400

seq1  TTCTCCCTGCGGGTCTACAAATCTGGCGGCCATTAGTGTGACATACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTGCGGGTCTACAAATCTGGCGGCCATTAGTGTGACATACACAT  450

seq1  CTGCTCCGTGCGGCATTGGACAGTCATTCTGTGAGCGGCAGGGCTGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCGTGCGGCATTGGACAGTCATTCTGTGAGCGGCAGGGCTGCTTG  500

seq1  CTTCCTGTGTCCCGCTTTCCACGGTCTCTGTGTCATGAGCTCAAAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGTCCCGCTTTCCACGGTCTCTGTGTCATGAGCTCAAAAGAGT  550

seq1  TGTCTCAGAGCAGAGCTGGGCCACAGCTGTCACTAGGACTTGCTGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGAGCAGAGCTGGGCCACAGCTGTCACTAGGACTTGCTGGCAGG  600

seq1  GGTTTGCAAGCACCTGTCACCTCTGCACCTGCCAGAGTCATGCGTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCAAGCACCTGTCACCTCTGCACCTGCCAGAGTCATGCGTGTCTC  650

seq1  TCCATGGAAGGCAAGCTTGCACCATC-TTTTTTTTTAATTAATTATTAAT  699
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  TCCATGGAAAGCAAGCTTGCACCATCTTTTTTTTTTAATTAATTATTAAT  700

seq1  TAATT-AATTAATTTATTTATTTTATATGAGTACACTGTAGCTGTCTTCA  748
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  TAATTAAATTAATTTA-TTATTTTATATGAGTACACTGTAGCTGTCTTCA  749

seq1  GAC-ACACGAGAAGAGGGCGTTAGATCCCATTACAGATGGTTGTGAGCC-  796
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACAACACGAGAAGAGGGCGTTAGATCCCATTACAGATGGTTGTGAGCCA  799

seq1  ACCA-TGTGGTTGC-TGGGAATTGAACTCA-GGACCCCTGGAAGAGCAGT  843
      |||| ||||||||| ||||||||||||||| | |||||||||||||||||
seq2  ACCATTGTGGTTGCTTGGGAATTGAACTCATGAACCCCTGGAAGAGCAGT  849

seq1  CAGTGCT  850
       ||||||
seq2  -AGTGCT  855