BAC Information

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BAC

Clone NameB6Ng01-020E12
Chromosome9 (Build37)
Map Location 68,954,712 - 69,134,916
singlet/doubletdoublet
Overlap geneRora
Upstream geneLOC100041451, 9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020E12.bB6Ng01-020E12.g
ACCDH853125DH853126
length1,117779
definitionDH853125|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E12, 5' end.DH853126|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,954,712 - 68,955,859)(69,134,241 - 69,134,916)
sequence
gaattctctggttctaaaagagaagcttaatgtgaaccaggcattctcta
atgtcccaaataaactgggagtcctcaggaaggctggtgtcagcagatca
gaacttgactttgaacgtatggttcttataagtccctgactcccagactt
tctatagctgcccacattgctggccagtctggagacacaaagggagatgg
accaccatgggcataccataaagagcctaagaggacacttatggaaacac
tgtaattttcattaaaacttttcttctccgagcaaaacagtaatatgttt
gaacatttgtagtgtttagaattcaaatgggcagagcattcagaaacaaa
aaggccctttaatgaaggtgtaaattgtgccttttgaaaatgactttctt
tccttgcctggtacccacagtaatgaacactcctacccaatcaaaatatg
aaaacagaactggagctgtgtcagcaacttggcggcaaataaaactcaaa
acaggtcggagcacatgctaggaatacaaaataaggtgaggagcgatgct
tcagctgcgagctcttcagcctgtggaaataatagagcataatttagtag
aagaggaaagagagagtcagcacacacaggggaaaaaaatgagagaagtg
aaaaaaaaaaaagaaaagaaaacagaacggtaaacccacaagaggtggaa
ataagtgtgaagacaatggatttcaggtccttagagaagagagtcccaga
ctggttagagacgcacccggcacagtgagggtagtctgattgggtttaat
ataaattgttcctcatactgagtttttcaaggtaatcgtgtggacactga
gcatctgaggcaaagctgtggcataagcatctgtaacgttagagatcaga
aagcagatccaggtgatcccgtggcgtttagtgactagatgtcaagacag
ttgctagtcgagatgatccctaaccctacccaacttgccagcatctctgt
atcatcctggcttacactgcacatgttactcgcagttcagcaacagggtc
ttttctctgcactcataagaattgtaagtacgatgcctctttggaaaatc
tagtcggcgaatataga
gaattctttcctgcaaatgggagaatgttacatatgagttctcaaacatt
attgtgttggctaatctcagccaagaggtcaaaatgagtttatagatggc
cacagactcatgtggggtcccattggctgcatacaccagatctgacactt
agtagaaagtagagacacattgtagagaccagattttcccagctcatccc
tgagcagagcctggtgcacttctgcaggggtccagactagagtatggcca
ggaagttggtgtcgatctctcttccagaggtcaagaaaatgacttgggtt
tcactccacagggccagtttatgagtctagagacacatggctgcccaaga
tgctcagacatcaaagcacaggatttagccctaaacaaaccattcctatt
actgcctctaaggctcaagaaatgtggaaagagactggaaaggaagtaag
atgtggaaaagtgtggtggagttccattctcttgacaccagtcatcatta
acatgaactagtagcagctgcaattgcttgcaaggggcccattcaagaca
gggcttttcaacagtcagtcatgggtgtgagagaactcagaagagcctac
ccattattccggtggagggggaacagttgtcttcaatggtatatccacta
gcaaacctgccgaactctaatagtaaatctgattaaggccatatggatgg
ccttggccaaacccaagagtcacaaatgagagaaaaagacaggaatgtgg
aagatgagtggggaaaggaagggaaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68954712_68955859
seq2: B6Ng01-020E12.b_45_1157

seq1  GAATTCTCTGGTTCTAAAAGAGAAGCTTAATGTGAACCAGGCATTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTTCTAAAAGAGAAGCTTAATGTGAACCAGGCATTCTCTA  50

seq1  ATGTCCCAAATAAACTGGGAGTCCTCAGGAAGGCTGGTGTCAGCAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCAAATAAACTGGGAGTCCTCAGGAAGGCTGGTGTCAGCAGATCA  100

seq1  GAACTTGACTTTGAACGTATGGTTCTTATAAGTCCCTGACTCCCAGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGACTTTGAACGTATGGTTCTTATAAGTCCCTGACTCCCAGACTT  150

seq1  TCTATAGCTGCCCACATTGCTGGCCAGTCTGGAGACACAAAGGGAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCTGCCCACATTGCTGGCCAGTCTGGAGACACAAAGGGAGATGG  200

seq1  ACCACCATGGGCATACCATAAAGAGCCTAAGAGGACACTTATGGAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATGGGCATACCATAAAGAGCCTAAGAGGACACTTATGGAAACAC  250

seq1  TGTAATTTTCATTAAAACTTTTCTTCTCCGAGCAAAACAGTAATATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTCATTAAAACTTTTCTTCTCCGAGCAAAACAGTAATATGTTT  300

seq1  GAACATTTGTAGTGTTTAGAATTCAAATGGGCAGAGCATTCAGAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGTAGTGTTTAGAATTCAAATGGGCAGAGCATTCAGAAACAAA  350

seq1  AAGGCCCTTTAATGAAGGTGTAAATTGTGCCTTTTGAAAATGACTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTTTAATGAAGGTGTAAATTGTGCCTTTTGAAAATGACTTTCTT  400

seq1  TCCTTGCCTGGTACCCACAGTAATGAACACTCCTACCCAATCAAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCTGGTACCCACAGTAATGAACACTCCTACCCAATCAAAATATG  450

seq1  AAAACAGAACTGGAGCTGTGTCAGCAACTTGGCGGCAAATAAAACTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAACTGGAGCTGTGTCAGCAACTTGGCGGCAAATAAAACTCAAA  500

seq1  ACAGGTCGGAGCACATGCTAGGAATACAAAATAAGGTGAGGAGCGATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCGGAGCACATGCTAGGAATACAAAATAAGGTGAGGAGCGATGCT  550

seq1  TCAGCTGCGAGCTCTTCAGCCTGTGGAAATAATAGAGCATAATTTAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCGAGCTCTTCAGCCTGTGGAAATAATAGAGCATAATTTAGTAG  600

seq1  AAGAGGAAAGAGAGAGTCAGCACACACAGGGGAAAAAAATGAGAGAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAGAGAGAGTCAGCACACACAGGGGAAAAAAATGAGAGAAGTG  650

seq1  AAAAAAAAAAAAGAAAAGAAAACAGAACGGTAAACCCACAAGAGGTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGAAAAGAAAACAGAACGGTAAACCCACAAGAGGTGGAA  700

seq1  ATAAGTGTGAAGACAATGGATTTCAGGTCCTTAGAGAAGAGAGTCCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTGAAGACAATGGATTTCAGGTCCTTAGAGAAGAGAGTCCCAGA  750

seq1  CTGGTTAGAGACGCACCCGGCACAGTGAGGGTAGTCTGATTGGGTTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGAGACGCACCCGGCACAGTGAGGGTAGTCTGATTGGGTTTAAT  800

seq1  ATAAATTGTTCCTCATACTGAGTTTTTCAAGGTAATCGTGTGGACACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGTTCCTCATACTGAGTTTTTCAAGGTAATCGTGTGGACACTGA  850

seq1  GCATCTGAGGCAAAGCTGTGGCATAAGCATCTGTAACGTTAGAGATCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAGGCAAAGCTGTGGCATAAGCATCTGTAACGTTAGAGATCAGA  900

seq1  AAGCAGGATCCAGGGTGATCCCGGTGGCGTTTAGTGACTAGGATGTTCAA  950
      ||||| |||||| ||||||||| ||||||||||||||||| |||| ||||
seq2  AAGCA-GATCCA-GGTGATCCC-GTGGCGTTTAGTGACTA-GATG-TCAA  945

seq1  GGACAGTTTGCTAGTCGAAGATGATCCCCTAAACCCTACCCAAACTTGCA  1000
       ||||| |||||||||| ||||||||||   |||||||||| ||||||| 
seq2  -GACAG-TTGCTAGTCG-AGATGATCCC--TAACCCTACCC-AACTTGC-  988

seq1  CAGCATCTCTGTAATCATCCTGGCTTACAACTGCACATGTTAACTCGCAA  1050
      |||||||||||| ||||||||||||||| |||||||||||| ||||||| 
seq2  CAGCATCTCTGT-ATCATCCTGGCTTAC-ACTGCACATGTT-ACTCGCA-  1034

seq1  GGTATCAGCCAAACAGGGGTCCTTTTCTTCTGCAACTTCATTAAGATATT  1100
       || |||||  |||||||   |||||| ||||||   ||| ||||  | |
seq2  -GT-TCAGC--AACAGGG--TCTTTTC-TCTGCA--CTCA-TAAG--AAT  1072

seq1  TGTAAGTACCGATGCTCTCTGTGGAAAAATACCTAAGTCGGGCGAATA  1148
      |||||||| |||||| |||| ||||||   | || |||| ||||||||
seq2  TGTAAGTA-CGATGC-CTCTTTGGAAA---ATCT-AGTC-GGCGAATA  1113

seq1: chr9_69134241_69134916
seq2: B6Ng01-020E12.g_169_844 (reverse)

seq1  CACCTTCCCTTCCTTTCCCCACTCATCTTCCACATTCCTGTCTTTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCCTTCCTTTCCCCACTCATCTTCCACATTCCTGTCTTTTTCTC  50

seq1  TCATTTGTGACTCTTGGGTTTGGCCAAGGCCATCCATATGGCCTTAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTGACTCTTGGGTTTGGCCAAGGCCATCCATATGGCCTTAATCA  100

seq1  GATTTACTATTAGAGTTCGGCAGGTTTGCTAGTGGATATACCATTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTATTAGAGTTCGGCAGGTTTGCTAGTGGATATACCATTGAAGA  150

seq1  CAACTGTTCCCCCTCCACCGGAATAATGGGTAGGCTCTTCTGAGTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTCCCCCTCCACCGGAATAATGGGTAGGCTCTTCTGAGTTCTCT  200

seq1  CACACCCATGACTGACTGTTGAAAAGCCCTGTCTTGAATGGGCCCCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCATGACTGACTGTTGAAAAGCCCTGTCTTGAATGGGCCCCTTGC  250

seq1  AAGCAATTGCAGCTGCTACTAGTTCATGTTAATGATGACTGGTGTCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTGCAGCTGCTACTAGTTCATGTTAATGATGACTGGTGTCAAGA  300

seq1  GAATGGAACTCCACCACACTTTTCCACATCTTACTTCCTTTCCAGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAACTCCACCACACTTTTCCACATCTTACTTCCTTTCCAGTCTCT  350

seq1  TTCCACATTTCTTGAGCCTTAGAGGCAGTAATAGGAATGGTTTGTTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTTCTTGAGCCTTAGAGGCAGTAATAGGAATGGTTTGTTTAGG  400

seq1  GCTAAATCCTGTGCTTTGATGTCTGAGCATCTTGGGCAGCCATGTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATCCTGTGCTTTGATGTCTGAGCATCTTGGGCAGCCATGTGTCTC  450

seq1  TAGACTCATAAACTGGCCCTGTGGAGTGAAACCCAAGTCATTTTCTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCATAAACTGGCCCTGTGGAGTGAAACCCAAGTCATTTTCTTGAC  500

seq1  CTCTGGAAGAGAGATCGACACCAACTTCCTGGCCATACTCTAGTCTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAGAGAGATCGACACCAACTTCCTGGCCATACTCTAGTCTGGAC  550

seq1  CCCTGCAGAAGTGCACCAGGCTCTGCTCAGGGATGAGCTGGGAAAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGAAGTGCACCAGGCTCTGCTCAGGGATGAGCTGGGAAAATCTG  600

seq1  GTCTCTACAATGTGTCTCTACTTTCTACTAAGTGTCAGATCTGGTGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTACAATGTGTCTCTACTTTCTACTAAGTGTCAGATCTGGTGTATG  650

seq1  CAGCCAATGGGACCCCACATGAGTCT  676
      ||||||||||||||||||||||||||
seq2  CAGCCAATGGGACCCCACATGAGTCT  676