BAC Information

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BAC

Clone NameB6Ng01-020K13
Chromosome9 (Build37)
Map Location 119,100,826 - 119,265,481
singlet/doubletdoublet
Overlap geneSlc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14
Downstream geneXylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020K13.bB6Ng01-020K13.g
ACCDH853395DH853396
length1,085858
definitionDH853395|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K13, 5' end.DH853396|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,100,826 - 119,101,939)(119,264,618 - 119,265,481)
sequence
gaattcttccaaaaagggctgagaacatggggtgtccactggctttggtc
aacagctccaaggacacaggtttacacctgggagaggaactggatgagag
ggaacaggcccccgggagtgtgtcaaagtcacgataaggagaatgggaac
atcttttttttttttttttttttttggtttttcgagacagggtttctctg
tgtagccctggctgtcctggaactcactttgtagaccaggctggcctcga
actcagaaatctgcctcccaagtgctgggattaaaggcgcacgccaccac
gcccagcatatgggaacatcttagggcttggacataaaagtcaaaaattc
aagatatgcagagtatggtggtcttaagctcagaagtcacccgaggagag
cagactgccatacctctttgcttttcctgcctaggcagagtttgaggtta
taatgtaacctatgaaataaatcatccattctgtgcaagtgtgtggggta
gtgagaacattgaggattacgtccagggagggcctccgtcatgctgggca
aagccacccactgtaaaatgggaagactggggcccagatctggaggatct
ctgccccccagtgcttgagctctgacaaagcaaagacaaccacagcactg
aacagcaggcaggtctctgtgtactggcgagtctccgttcaacagcgccc
tctaggggacagtgtggactggcctacgctagccaccaagtccccaggaa
aattcccttctattggatctaccatgagtggagatcaggccagggtggca
tctcctcttggctcccagaagtcttaccactaaaaaacctgattaacaga
atgcacggagaacctccaacagcccatgaacgagtgagtgtagcagagcc
agctcttagcagccatcaaaggcagaattgctgatgagccgggcacctgg
aaagagcagggacagcagctgaatgtaagaccctgctctctcccaagcac
caggaggctgggcagtgggtgagcaggctgacagttcttcatgcagctta
caagtgtaggcacactggccaagtcggcaggaagg
gaattcctgatcctcctgcctcactctcccaaatgctgtgattgcaggtg
gaagccacgattcccagttagaactcatctgttatcgtgacccacaggtc
agcagactgtctgggctgagctcaggtggcggtggcagtggcggtgtctc
tgctactcaagactcttgtccccacccctgaacagtatgctcacagtgcg
cctgtctgagaacctcagaaaagagcttagtgaatgatgtcagcaaaagg
tgtgggtgcccagtgtaaagaatggagaaatgcattctggaggcaggagg
aggcagatctctgggatttcaagactagtctactttacatagaaagttcc
aggacagccaggactacacggtgaaacctagtctcaaaatggggtggggg
tggggccacaagaggccattgccagatggagagggcttcacactctttgt
tggacacacggaaatgaactcaggctgggcgatgtggatgacctagtaat
ttagctagaacgtttgaggcccctctggggtgtctgagtggagatgttga
gcaggccagtttggatgtgtggcctctaactcaggtaagatgtctgggtt
gtgaacaatgatttgggagctgtcgtctccaagtgggtaagtcatatgtg
aaaagaagagctcagaataaggcaggtggggggccactgggaattatgaa
gactacagggaacacacatgggaatcatgacaggcatactggatagggga
agatactagattttaaaacttttcctggaaggcaacttttgccagttgct
gctactagaagattgtaggtgaaaaatggaaggtggttcaaaatttttaa
gaagagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119100826_119101939
seq2: B6Ng01-020K13.b_43_1127

seq1  GAATTCTTCCAAAAAGGGCTGAGAACATGGGGTGTCCACTGGCTTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAAAAAGGGCTGAGAACATGGGGTGTCCACTGGCTTTGGTC  50

seq1  AACAGCTCCAAGGACACAGGTTTACACCTGGGAGAGGAACTGGATGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCCAAGGACACAGGTTTACACCTGGGAGAGGAACTGGATGAGAG  100

seq1  GGAACAGGCCCCCGGGAGTGTGTCAAAGTCACGATAAGGAGAATGGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGCCCCCGGGAGTGTGTCAAAGTCACGATAAGGAGAATGGGAAC  150

seq1  ATCTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTG  200

seq1  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  250

seq1  ACTCAGAAATCTGCCTCCCAAGTGCTGGGATTAAAGGCGCACGCCACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCTGCCTCCCAAGTGCTGGGATTAAAGGCGCACGCCACCAC  300

seq1  GCCCAGCATATGGGAACATCTTAGGGCTTGGACATAAAAGTCAAAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCATATGGGAACATCTTAGGGCTTGGACATAAAAGTCAAAAATTC  350

seq1  AAGATATGCAGAGTATGGTGGTCTTAAGCTCAGAAGTCACCCGAGGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGCAGAGTATGGTGGTCTTAAGCTCAGAAGTCACCCGAGGAGAG  400

seq1  CAGACTGCCATACCTCTTTGCTTTTCCTGCCTAGGCAGAGTTTGAGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGCCATACCTCTTTGCTTTTCCTGCCTAGGCAGAGTTTGAGGTTA  450

seq1  TAATGTAACCTATGAAATAAATCATCCATTCTGTGCAAGTGTGTGGGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAACCTATGAAATAAATCATCCATTCTGTGCAAGTGTGTGGGGTA  500

seq1  GTGAGAACATTGAGGATTACGTCCAGGGAGGGCCTCCGTCATGCTGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACATTGAGGATTACGTCCAGGGAGGGCCTCCGTCATGCTGGGCA  550

seq1  AAGCCACCCACTGTAAAATGGGAAGACTGGGGCCCAGATCTGGAGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCCACTGTAAAATGGGAAGACTGGGGCCCAGATCTGGAGGATCT  600

seq1  CTGCCCCCCAGTGCTTGAGCTCTGACAAAGCAAAGACAACCACAGCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCCAGTGCTTGAGCTCTGACAAAGCAAAGACAACCACAGCACTG  650

seq1  AACAGCAGGCAGGTCTCTGTGTACTGGCGAGTCTCCGTTCAACAGCGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGGCAGGTCTCTGTGTACTGGCGAGTCTCCGTTCAACAGCGCCC  700

seq1  TCTAGGGGACAGGTGTGGACTGGCCTACGCTAGCCACCAAGTCCCCAGGA  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGGACA-GTGTGGACTGGCCTACGCTAGCCACCAAGTCCCCAGGA  749

seq1  AAATTCCCTTCTATTGGATCTACCATGAGTGGAGATCAGGCCAGGGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCTTCTATTGGATCTACCATGAGTGGAGATCAGGCCAGGGTGGC  799

seq1  ATCTCCTCTGGGCTCCCAGAAGTCTTACCACTAAAATAACCTGATTAACA  850
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  ATCTCCTCTTGGCTCCCAGAAGTCTTACCACTAAAA-AACCTGATTAACA  848

seq1  GAATGCACGGAGAACCTCCAAACAGCCCATGAACGAGTGAGTGTAGCAGA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATGCACGGAGAACCTCC-AACAGCCCATGAACGAGTGAGTGTAGCAGA  897

seq1  GCCAGCTCTTAGCAGCCATCAGAGGCAGAATTGCTGATGAGCCGGGGCAC  950
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  GCCAGCTCTTAGCAGCCATCAAAGGCAGAATTGCTGATGAGCC-GGGCAC  946

seq1  CCTGGGAAAGAGCAAGGGACAGCAGCTGAATGTAAGGAACCCTGCTCTCT  1000
      |   ||||||||| ||||||||||||||||||||||  ||||||||||| 
seq2  C--TGGAAAGAGC-AGGGACAGCAGCTGAATGTAAG--ACCCTGCTCTC-  990

seq1  TCCCAAGCACCAGGGAGGCTGGGCACAGTGGGTGGAGGCAGAGCTGACCA  1050
      |||||||||||| ||||||||||  |||||||||   |||| ||||| ||
seq2  TCCCAAGCACCA-GGAGGCTGGG--CAGTGGGTG--AGCAG-GCTGA-CA  1033

seq1  GTCTCCTCCCATCGCCAGCCTCACACAGGTG-AGGCACACACTGGCCACA  1099
      || || |  |||   |||| |   ||| ||| |||  |||||||||  ||
seq2  GT-TCTT--CAT--GCAGCTT---ACAAGTGTAGG--CACACTGGC--CA  1071

seq1  GGTCGGGCAGGAAGG  1114
       ||| ||||||||||
seq2  AGTC-GGCAGGAAGG  1085

seq1: chr9_119264618_119265481
seq2: B6Ng01-020K13.g_66_923 (reverse)

seq1  GGCTCTTCTTTATAAATTTTTAGAACCCACCTCTCCATTTTTCAACCTAA  50
      |||||||| ||| |||||||  ||| |||||| |||||||||| |||| |
seq2  GGCTCTTC-TTAAAAATTTT--GAA-CCACCT-TCCATTTTTC-ACCT-A  43

seq1  CATACTTCTAGGTAGCATGCAACTGGCAAAAGTCTGCCTTCCAGG-AAAG  99
      ||  |||||| |||||| ||||||||||||||| ||||||||||| ||||
seq2  CAATCTTCTA-GTAGCA-GCAACTGGCAAAAGT-TGCCTTCCAGGAAAAG  90

seq1  TTTT-AAATCTAGTATCTTCCCCTATCC-GTATGCCTGTCATGATTCCCA  147
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTAAAATCTAGTATCTTCCCCTATCCAGTATGCCTGTCATGATTCCCA  140

seq1  TGTGTGTTCCCTGTAGTCTTCATAATTCCCAGTGG-CCCCCACCTGCCTT  196
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGTGTTCCCTGTAGTCTTCATAATTCCCAGTGGCCCCCCACCTGCCTT  190

seq1  ATTCTGAGCTCTTCTTTTCACATCTGACTTACCCACTTGGAGACGACAGC  246
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTCTGAGCTCTTCTTTTCACATATGACTTACCCACTTGGAGACGACAGC  240

seq1  TCCCAAATCATTGTTCACAACCCAGACATCTTACCTGAGTTAGAGGCCAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATCATTGTTCACAACCCAGACATCTTACCTGAGTTAGAGGCCAC  290

seq1  ACATCCAAACTGGCCTGCTCAACATCTCCACTCAGACACCCCAGAGGGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAAACTGGCCTGCTCAACATCTCCACTCAGACACCCCAGAGGGGC  340

seq1  CTCAAACGTTCTAGCTAAATTACTAGGTCATCCACATCGCCCAGCCTGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACGTTCTAGCTAAATTACTAGGTCATCCACATCGCCCAGCCTGAG  390

seq1  TTCATTTCCGTGTGTCCAACAAAGAGTGTGAAGCCCTCTCCATCTGGCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCCGTGTGTCCAACAAAGAGTGTGAAGCCCTCTCCATCTGGCAA  440

seq1  TGGCCTCTTGTGGCCCCACCCCCACCCCATTTTGAGACTAGGTTTCACCG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTTGTGGCCCCACCCCCACCCCATTTTGAGACTAGGTTTCACCG  490

seq1  TGTAGTCCTGGCTGTCCTGGAACTTTCTATGTAAAGTAGACTAGTCTTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCTGGCTGTCCTGGAACTTTCTATGTAAAGTAGACTAGTCTTGA  540

seq1  AATCCCAGAGATCTGCCTCCTCCTGCCTCCAGAATGCATTTCTCCATTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGAGATCTGCCTCCTCCTGCCTCCAGAATGCATTTCTCCATTCT  590

seq1  TTACACTGGGCACCCACACCTTTTGCTGACATCATTCACTAAGCTCTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGGGCACCCACACCTTTTGCTGACATCATTCACTAAGCTCTTTT  640

seq1  CTGAGGTTCTCAGACAGGCGCACTGTGAGCATACTGTTCAGGGGTGGGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTCTCAGACAGGCGCACTGTGAGCATACTGTTCAGGGGTGGGGA  690

seq1  CAAGAGTCTTGAGTAGCAGAGACACCGCCACTGCCACCGCCACCTGAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCTTGAGTAGCAGAGACACCGCCACTGCCACCGCCACCTGAGCT  740

seq1  CAGCCCAGACAGTCTGCTGACCTGTGGGTCACGATAACAGATGAGTTCTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGACAGTCTGCTGACCTGTGGGTCACGATAACAGATGAGTTCTA  790

seq1  ACTGGGAATCGTGGCTTCCACCTGCAATCACAGCATTTGGGAGAGTGAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAATCGTGGCTTCCACCTGCAATCACAGCATTTGGGAGAGTGAGG  840

seq1  CAGGAGGATCAGGAATTC  864
      ||||||||||||||||||
seq2  CAGGAGGATCAGGAATTC  858