BAC Information

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BAC

Clone NameB6Ng01-021C12
Chromosome9 (Build37)
Map Location 99,008,853 - 99,144,880
singlet/doubletdoublet
Overlap genePik3cb, LOC100040442, LOC100040757, EG623459, Cep70
Upstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123
Downstream geneD9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021C12.bB6Ng01-021C12.g
ACCDH853742DH853743
length1,0201,080
definitionDH853742|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C12, 5' end.DH853743|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,008,853 - 99,009,893)(99,143,771 - 99,144,880)
sequence
gaattccagcatctcctgcttccacctcccaaatgagggttacaggcata
catcaccatccttgttcctattagaaatactttaaggcagatgtggttgt
acaggcctttaatcccagcaaccaagaggcagaaataagaatattcctga
gtccaagctcagcctggtctacagatggctacacagaaaacccatgtctc
aaacaaagaaaaatacttgtaaaacaggacatggtaacacacacctttaa
tcctggcactcaggaggcaaaggcaggcagatctgtgagtctgagactag
cctaggacagccagagctttgaaataaagaccttgtctcaaaaagggcaa
ctcctcccactaaaataaaaataaatacttttaagaaaatacaatcacag
ctgggtggtagtggtggtacacaccttcagccccaacacttgggagacac
aggctggcagatctctcttccaggccagagctagttccaggccagccaga
gctacatagagaagccctgtctcaaagagagaaagaagagaagagaagag
aagagaagagaagagaagagaagagaagagaagagaagagaagagaagag
aagagaagagaagagaagagaagaataaaattaaaagggaaggaaggaaa
gagagagaaagaaagaaagtagggaagagagagagagagagagagagaaa
gaaagaaagaaagaaagaaagagagaaagagagaaagaaagaaagagaga
aagagagaaagaaagaagaaatgctattaaggaaggaaggaagtaaacta
ttagtatggtggggagggcctgcctagcatgcatgaagttctgagttcaa
ggcccagcactgcacctcccactgctgctactaattgaaagtaaacattt
tgtctcctttgccttgtcgtcttcttcagaaagcagtgctacttgcgagc
aagcctatgagcttccgtcaggaggagtcttagagtagcatactctcctc
acgaaagtagaaaacaagcc
gaattcaatgtcgtcctcagacggcctgcatgaaaccttgccttaacgtg
aatcaacaattcaattccaacaacattgcaacttgctcttcacggtttac
catttactagctatttactatttacaaaaatccatgcaatgcacaagatt
gaaaccaatgcctgcagcgctgatatgattacaaaataaagtggcaggct
agagagacagctcagtgggtaaaggcacttgtcccaagaaagcttgagaa
gcaatcctcagaatccacaggaggcgagaattctgtaaccccgggcctcc
tgtagggagatcggactctgcagctctcccctccatcccctacagtatgc
agaaaaacaaaagaccttgtctcaaacaaggtagaggcaatgaccgacgc
ccaaggttgtcctctttctctacgtctgcaccgtggcgtgaacaattatt
gattagttgataatagtgggaaccttgattaggctttgctgtgtttttca
cattaatcaacgtggacccacataaaggcggagtccttaaatttgtaatg
agtctgacaggaggggtactcgcctaccctttactccgcgatctcccact
tggctccaaatcgctatcacctgacagcgccgcaaagagaactggagcta
gcccggaacccagccgattccatgtaggagtctaagctcagttcctgctt
cctctaccaggtcgcacaccttcaacactcggctgggagaagaggttgag
tgaggagcgagggacacaaagcgacgggcgggctccccgcagggaggtcc
acgcccacacctgcacgcgcatttcctagctagcgcgtagagccggggcg
actccattctgagggccctggctggtgagtgggacgctccggattccgga
gaagccacctttgggcgtgcactgaggggccacgtaaagtctcgcgaccc
cagcgcactcactcgtcacagcccgtgcctccacgcgctcgcctccgcgc
taagcccgctacgcgacgtagcgcagcaggctgacatcgactgaccagtc
gattgcctccaggggcggacacccacctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99008853_99009893
seq2: B6Ng01-021C12.b_47_1066

seq1  GAATTCCAGCATCTCCTGCTTCCACCTCCCAAATGAGGGTTACAGGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATCTCCTGCTTCCACCTCCCAAATGAGGGTTACAGGCATA  50

seq1  CATCACCATCCTTGTTCCTATTAGAAATACTTTAAGGCAGATGTGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCATCCTTGTTCCTATTAGAAATACTTTAAGGCAGATGTGGTTGT  100

seq1  ACAGGCCTTTAATCCCAGCAACCAAGAGGCAGAAATAAGAATATTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTTTAATCCCAGCAACCAAGAGGCAGAAATAAGAATATTCCTGA  150

seq1  GTCCAAGCTCAGCCTGGTCTACAGATGGCTACACAGAAAACCCATGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGCTCAGCCTGGTCTACAGATGGCTACACAGAAAACCCATGTCTC  200

seq1  AAACAAAGAAAAATACTTGTAAAACAGGACATGGTAACACACACCTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAAAATACTTGTAAAACAGGACATGGTAACACACACCTTTAA  250

seq1  TCCTGGCACTCAGGAGGCAAAGGCAGGCAGATCTGTGAGTCTGAGACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCACTCAGGAGGCAAAGGCAGGCAGATCTGTGAGTCTGAGACTAG  300

seq1  CCTAGGACAGCCAGAGCTTTGAAATAAAGACCTTGTCTCAAAAAGGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACAGCCAGAGCTTTGAAATAAAGACCTTGTCTCAAAAAGGGCAA  350

seq1  CTCCTCCCACTAAAATAAAAATAAATACTTTTAAGAAAATACAATCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCACTAAAATAAAAATAAATACTTTTAAGAAAATACAATCACAG  400

seq1  CTGGGTGGTAGTGGTGGTACACACCTTCAGCCCCAACACTTGGGAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGTAGTGGTGGTACACACCTTCAGCCCCAACACTTGGGAGACAC  450

seq1  AGGCTGGCAGATCTCTCTTCCAGGCCAGAGCTAGTTCCAGGCCAGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCAGATCTCTCTTCCAGGCCAGAGCTAGTTCCAGGCCAGCCAGA  500

seq1  GCTACATAGAGAAGCCCTGTCTCAAAGAGAGAAAGAAGAGAAGAGAAGAG  550
      |||||||||||||||||||||||||||||||||     ||||||||||||
seq2  GCTACATAGAGAAGCCCTGTCTCAAAGAGAGAA-----AGAAGAGAAGAG  545

seq1  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG  595

seq1  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAATAAAATTAAAAGGGAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAATAAAATTAAAAGGGAAGGAA  645

seq1  GGAAAGAGAGAGAAAGAAAGAAAGTAGGGAAGAGAGAGAGAGAGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGAGAGAAAGAAAGAAAGTAGGGAAGAGAGAGAGAGAGAGAGAG  695

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAG  745

seq1  AGAGAAAGAGAGAAAGAAAGAAAGAAAGGCTATTAAGGAAGGAAGGAAGT  800
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  AGAGAAAGAGAGAAAGAAAG-AAGAAATGCTATTAAGGAAGGAAGGAAGT  794

seq1  AAACTATTAGTATGGTGGGGAGGGCCTGCCTAGCATGCATGAGGTTCTGA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAACTATTAGTATGGTGGGGAGGGCCTGCCTAGCATGCATGAAGTTCTGA  844

seq1  GTTCAAGGCCCAGCACTGCACCTCCCACTGCTGCTACTAAATTGAAAGTA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  GTTCAAGGCCCAGCACTGCACCTCCCACTGCTGCTACT-AATTGAAAGT-  892

seq1  AAACATTTTGTTCTCCTTTGCCTTGTCGTCCTTCTTCCAGAGAGCAAGTG  950
      |||||||||| |||||||||||||||||| |||||| |||| ||| ||||
seq2  AAACATTTTG-TCTCCTTTGCCTTGTCGT-CTTCTT-CAGAAAGC-AGTG  938

seq1  CTACATGCAGAGCCAAGCCTATGAGCTTCCGGTCAGGAGGAGTCTTAAGA  1000
      |||| ||| ||| ||||||||||||||||| ||||||||||||||| |||
seq2  CTACTTGC-GAG-CAAGCCTATGAGCTTCC-GTCAGGAGGAGTCTT-AGA  984

seq1  GTAGCATACTCTCCTCACAGAAAGGTAAGAAAACCAAAGCC  1041
      |||||||||||||||||| |||||   |||||||  |||||
seq2  GTAGCATACTCTCCTCAC-GAAAG--TAGAAAAC--AAGCC  1020

seq1: chr9_99143771_99144880
seq2: B6Ng01-021C12.g_70_1149 (reverse)

seq1  CCAGGTGGTGTTGTCCCGCCCCGCTGGGAGGCCATCGACTGCGTCAGTTC  50
      |||||||  | ||| |||||||    |||||| |||||||| ||||| ||
seq2  CCAGGTG--GGTGT-CCGCCCC---TGGAGGCAATCGACTG-GTCAG-TC  42

seq1  GATTGGTCAGCCTGGCTGCGCTAACGGTCGCGTAGGCGGGGCTTAGGCCG  100
      |||  |||||||| |||||||||   |||||||||   ||||||||  ||
seq2  GAT--GTCAGCCT-GCTGCGCTA--CGTCGCGTAG--CGGGCTTAG--CG  83

seq1  CGGGGGCGAGCGCGGTGGAAGCCACGGGCTGTGACCGAGGTGAGTGGCGC  150
      ||| ||||||||| |||| || |||||||||||| ||| |||||| ||||
seq2  CGGAGGCGAGCGC-GTGG-AGGCACGGGCTGTGA-CGA-GTGAGT-GCGC  128

seq1  TTGGGGTCGCCGAGGACTTTACGTGGGCCCCCTTCAGGTGCACGCCCAAA  200
       |||||||| ||| ||||||||||||   ||| ||| |||||||||||||
seq2  -TGGGGTCG-CGA-GACTTTACGTGG---CCCCTCA-GTGCACGCCCAAA  171

seq1  GGTGGCTTCTCCGGAATCCGGAGCGTCCCACTCACCAGCCAGGGCCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTCTCCGGAATCCGGAGCGTCCCACTCACCAGCCAGGGCCCTCA  221

seq1  GAATGGAGTCGCCCCGGCTCCTACGCGCTAGCTAGGAAATGCGCGTGCAG  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATGGAGTCGCCCCGGCT-CTACGCGCTAGCTAGGAAATGCGCGTGCAG  270

seq1  GTGTGGGCGTGGACCTCCCTGCGGGGAGCCCGCCCGTCGCTTTGTGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGCGTGGACCTCCCTGCGGGGAGCCCGCCCGTCGCTTTGTGTCCC  320

seq1  TCGCTCCTCACTCAACCTCTTCTCCCAGCCGAGTGTTGAAGGTGTGCGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCCTCACTCAACCTCTTCTCCCAGCCGAGTGTTGAAGGTGTGCGAC  370

seq1  CTGGTAGAGGAAGCAGGAACTGAGCTTAGACTCCTACATGGAATCGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGAGGAAGCAGGAACTGAGCTTAGACTCCTACATGGAATCGGCTG  420

seq1  GGTTCCGGGCTAGCTCCAGTTCTCTTTGCGGCGCTGTCAGGTGATAGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGGGCTAGCTCCAGTTCTCTTTGCGGCGCTGTCAGGTGATAGCGA  470

seq1  TTTGGAGCCAAGTGGGAGATCGCGGAGTAAAGGGTAGGCGAGTACCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCCAAGTGGGAGATCGCGGAGTAAAGGGTAGGCGAGTACCCCTC  520

seq1  CTGTCAGACTCATTACAAATTTAAGGACTCCGCCTTTATGTGGGTCCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGACTCATTACAAATTTAAGGACTCCGCCTTTATGTGGGTCCACG  570

seq1  TTGATTAATGTGAAAAACACAGCAAAGCCTAATCAAGGTTCCCACTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAATGTGAAAAACACAGCAAAGCCTAATCAAGGTTCCCACTATTA  620

seq1  TCAACTAATCAATAATTGTTCACGCCACGGTGCAGACGTAGAGAAAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAATCAATAATTGTTCACGCCACGGTGCAGACGTAGAGAAAGAGG  670

seq1  ACAACCTTGGGCGTCGGTCATTGCCTCTACCTTGTTTGAGACAAGGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTGGGCGTCGGTCATTGCCTCTACCTTGTTTGAGACAAGGTCTT  720

seq1  TTGTTTTTCTGCATACTGTAGGGGATGGAGGGGAGAGCTGCAGAGTCCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTGCATACTGTAGGGGATGGAGGGGAGAGCTGCAGAGTCCGA  770

seq1  TCTCCCTACAGGAGGCCCGGGGTTACAGAATTCTCGCCTCCTGTGGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTACAGGAGGCCCGGGGTTACAGAATTCTCGCCTCCTGTGGATTC  820

seq1  TGAGGATTGCTTCTCAAGCTTTCTTGGGACAAGTGCCTTTACCCACTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTGCTTCTCAAGCTTTCTTGGGACAAGTGCCTTTACCCACTGAG  870

seq1  CTGTCTCTCTAGCCTGCCACTTTATTTTGTAATCATATCAGCGCTGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTAGCCTGCCACTTTATTTTGTAATCATATCAGCGCTGCAGG  920

seq1  CATTGGTTTCAATCTTGTGCATTGCATGGATTTTTGTAAATAGTAAATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTTCAATCTTGTGCATTGCATGGATTTTTGTAAATAGTAAATAG  970

seq1  CTAGTAAATGGTAAACCGTGAAGAGCAAGTTGCAATGTTGTTGGAATTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAATGGTAAACCGTGAAGAGCAAGTTGCAATGTTGTTGGAATTGA  1020

seq1  ATTGTTGATTCACGTTAAGGCAAGGTTTCATGCAGGCCGTCTGAGGACGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGATTCACGTTAAGGCAAGGTTTCATGCAGGCCGTCTGAGGACGA  1070

seq1  CATTGAATTC  1110
      ||||||||||
seq2  CATTGAATTC  1080