BAC Information

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BAC

Clone NameB6Ng01-021J22
Chromosome9 (Build37)
Map Location 43,994,038 - 44,131,738
singlet/doubletdoublet
Overlap geneCbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24
Upstream genePou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam
Downstream geneDpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021J22.bB6Ng01-021J22.g
ACCDH854072DH854073
length1,0091,028
definitionDH854072|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J22, 5' end.DH854073|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,130,729 - 44,131,738)(43,994,038 - 43,995,070)
sequence
gaattctagagaagttgaaaaagatgaccagatatttctgaacagggcag
agattccaaatagtactacaaataaaggaagaaaagtatggattcaaatg
atactgtttttcctcttttaagagctaggtcaaaatgaccttacaaaacg
tcaggtcaacctgaaatttcaaatgagtggtaatcattaactcggtttta
tacagctcatgatatttggtcctaatattccctttgtagtagatgtcttt
tctgatttcatttttgtttgttgtttgtttgagcctgggtctctctatgt
agtttaaattggtcttgaactcaaaatctcctgcctctgcttcccatggg
catactgagatcataggtgcgagccaccatgccctgtccaaagggaagct
cgcttctgaggctgagtctcagtcactgaggtcctaacttcagtaggtct
ccttttttctttcctcctttcttcctttttaaaagattttatttatttta
tgtatatgagtacactgtagttgtccttcagacacaccagaaaagggcat
cagatcccattacaaatggctgggagccaccatgtggttgctgggatttg
aactcaggacctctgggaaagcagttggtgctcttaaccgctgagccatc
tccccagccagataggtctccttgatgcagcctttctctttttgcagtgc
tgggggcagaaaccaagggtctcatgcacgttaggtcaggcatctcccac
tgagccctatcctaaaccctatcagactattttccattgagacatcttaa
gaggggttcttacatatcctgggctgagcttgaatttactaagtagacca
tatggccagcctgaccttgaacgtctgatctttctaccttgttcccttct
tcctgtggggtgagttacaggtgtgtaccaccatgcctagtttatgtgac
gctggcgtcaactcagccttgtttctgctagccagcactttaccaatgag
ctagctcag
gaattcactctgtagatcaagctggccttgaactcagagatctgtctgcc
tctgcctctggagtgctggaattaaaagcatgcagggacaccacctagct
agtgacagttttccaaaggaatttgtactgaatattacccgcaaaagctt
attttaatttttaaattttatttttattccatatgggtgttttgcctatg
tatctctgtataccacgtgaacgcttagtgcctgagaaggccagaaaagt
ttgtcagatcttctgaaactagagtttcaggtggttgtgagccacaatat
gggtgctaggaatgaacccaggtcctctagaagagcaactagtactccta
atcaccgagccagctttccagcacccaccagtctattttaatcttgcatg
aagtttgttcataaatacaaaagtaattcattttactacttgcataatcc
tagtatatgaaacaaagaaacatgaatgtgttctcttcagagccaggcat
agcaatagcggcacatgcttttgagcacttggaaggcagaggcagacaga
tctccatgagttcaggtcagcctagtttttacaaagtgagtccaggacag
ccaggagtggttacactcagaaaccctgtcccgaaaaacaaaacaaaagt
tatcttcaggggctttgtgggcactgtatgtacatggtatgcttatatac
atgcaagaaaaataatcatattcataaagttcatttttaaaaacgttatt
tttatctatcaatacaactttttaacaatttctgaatgctcataggcaca
gtggaggtagcttgggtagcactgcctaaactcagtaaagctaaagtgac
tattaatcactaatctagttaaatagtaaaaacatatattttgtgtgtga
gattgggtttgtgtggaggccaaagtcaatcacaggtagctcctcaggag
ctgtttatctgtgtttgagacaaggtcttcattgggactttatgctagcc
tagccatcagctagactggtattcctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44130729_44131738
seq2: B6Ng01-021J22.b_46_1049 (reverse)

seq1  CTAGCTCAATTGGTAAAGTGCTGGCTTAGCAGAAACAAAGGCCTGAGTTT  50
      ||||||| ||||||||||||||||| ||||||||||||  | ||||| ||
seq2  CTAGCTC-ATTGGTAAAGTGCTGGC-TAGCAGAAACAA--GGCTGAG-TT  45

seq1  GACCGCCAGCGTCACATAAACTAGGCATGGTGGTACACACCTGTAACTCA  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-CGCCAGCGTCACATAAACTAGGCATGGTGGTACACACCTGTAACTCA  94

seq1  CCCCACAGGAAGAGGGGAAACAAGGTAGAAAGATCAGACGTTCAAGGTCA  150
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  CCCCACAGGAAGAAGGG-AACAAGGTAGAAAGATCAGACGTTCAAGGTCA  143

seq1  GGCTGGCCATATGGTCTACTTAGTAAATTCAAGCTCAGCCCAGGATATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCATATGGTCTACTTAGTAAATTCAAGCTCAGCCCAGGATATGT  193

seq1  AAGAACCCCTCTTAAGATGTCTCAATGGAAAATAGTCTGATAGGGTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCCTCTTAAGATGTCTCAATGGAAAATAGTCTGATAGGGTTTAG  243

seq1  GATAGGGCTCAGTGGGAGATGCCTGACCTAACGTGCATGAGACCCTTGG-  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATAGGGCTCAGTGGGAGATGCCTGACCTAACGTGCATGAGACCCTTGGT  293

seq1  TTCTGCCCCCAGCACTGCAAAAAGAGAAAGGCTGCATCAAGGAGACCTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCCCAGCACTGCAAAAAGAGAAAGGCTGCATCAAGGAGACCTAT  343

seq1  CTGGCTGGGGAGATGGCTCAGCGGTTAAGAGCACCAACTGCTTTCCCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGGGAGATGGCTCAGCGGTTAAGAGCACCAACTGCTTTCCCAGA  393

seq1  GGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCCCAGCCATTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCCCAGCCATTTGT  443

seq1  AATGGGATCTGATGCCCTTTTCTGGTGTGTCTGAAGGACAACTACAGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCTGATGCCCTTTTCTGGTGTGTCTGAAGGACAACTACAGTGT  493

seq1  ACTCATATACATAAAATAAATAAAATCTTTTAAAAAGGAAGAAAGGAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATATACATAAAATAAATAAAATCTTTTAAAAAGGAAGAAAGGAGGA  543

seq1  AAGAAAAAAGGAGACCTACTGAAGTTAGGACCTCAGTGACTGAGACTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAGGAGACCTACTGAAGTTAGGACCTCAGTGACTGAGACTCAG  593

seq1  CCTCAGAAGCGAGCTTCCCTTTGGACAGGGCATGGTGGCTCGCACCTATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGCGAGCTTCCCTTTGGACAGGGCATGGTGGCTCGCACCTATG  643

seq1  ATCTCAGTATGCCCATGGGAAGCAGAGGCAGGAGATTTTGAGTTCAAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTATGCCCATGGGAAGCAGAGGCAGGAGATTTTGAGTTCAAGAC  693

seq1  CAATTTAAACTACATAGAGAGACCCAGGCTCAAACAAACAACAAACAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAACTACATAGAGAGACCCAGGCTCAAACAAACAACAAACAAAA  743

seq1  ATGAAATCAGAAAAGACATCTACTACAAAGGGAATATTAGGACCAAATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCAGAAAAGACATCTACTACAAAGGGAATATTAGGACCAAATAT  793

seq1  CATGAGCTGTATAAAACCGAGTTAATGATTACCACTCATTTGAAATTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTGTATAAAACCGAGTTAATGATTACCACTCATTTGAAATTTCA  843

seq1  GGTTGACCTGACGTTTTGTAAGGTCATTTTGACCTAGCTCTTAAAAGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACCTGACGTTTTGTAAGGTCATTTTGACCTAGCTCTTAAAAGAGG  893

seq1  AAAAACAGTATCATTTGAATCCATACTTTTCTTCCTTTATTTGTAGTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGTATCATTTGAATCCATACTTTTCTTCCTTTATTTGTAGTACT  943

seq1  ATTTGGAATCTCTGCCCTGTTCAGAAATATCTGGTCATCTTTTTCAACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAATCTCTGCCCTGTTCAGAAATATCTGGTCATCTTTTTCAACTT  993

seq1  CTCTAGAATTC  1010
      |||||||||||
seq2  CTCTAGAATTC  1004

seq1: chr9_43994038_43995070
seq2: B6Ng01-021J22.g_66_1093

seq1  GAATTCACTCTGTAGATCAAGCTGGCCTTGAACTCAGAGATCTGTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCAAGCTGGCCTTGAACTCAGAGATCTGTCTGCC  50

seq1  TCTGCCTCTGGAGTGCTGGAATTAAAAGCATGCAGGGACACCACCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGGAGTGCTGGAATTAAAAGCATGCAGGGACACCACCTAGCT  100

seq1  AGTGACAGTTTTCCAAAGGAATTTGTACTGAATATTACCCGCAAAAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGTTTTCCAAAGGAATTTGTACTGAATATTACCCGCAAAAGCTT  150

seq1  ATTTTAATTTTTAAATTTTATTTTTATTCCATATGGGTGTTTTGCCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTTTAAATTTTATTTTTATTCCATATGGGTGTTTTGCCTATG  200

seq1  TATCTCTGTATACCACGTGAACGCTTAGTGCCTGAGAAGGCCAGAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGTATACCACGTGAACGCTTAGTGCCTGAGAAGGCCAGAAAAGT  250

seq1  TTGTCAGATCTTCTGAAACTAGAGTTTCAGGTGGTTGTGAGCCACAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGATCTTCTGAAACTAGAGTTTCAGGTGGTTGTGAGCCACAATAT  300

seq1  GGGTGCTAGGAATGAACCCAGGTCCTCTAGAAGAGCAACTAGTACTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTAGGAATGAACCCAGGTCCTCTAGAAGAGCAACTAGTACTCCTA  350

seq1  ATCACCGAGCCAGCTTTCCAGCACCCACCAGTCTATTTTAATCTTGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCGAGCCAGCTTTCCAGCACCCACCAGTCTATTTTAATCTTGCATG  400

seq1  AAGTTTGTTCATAAATACAAAAGTAATTCATTTTACTACTTGCATAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTTCATAAATACAAAAGTAATTCATTTTACTACTTGCATAATCC  450

seq1  TAGTATATGAAACAAAGAAACATGAATGTGTTCTCTTCAGAGCCAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATGAAACAAAGAAACATGAATGTGTTCTCTTCAGAGCCAGGCAT  500

seq1  AGCAATAGCGGCACATGCTTTTGAGCACTTGGAAGGCAGAGGCAGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGCGGCACATGCTTTTGAGCACTTGGAAGGCAGAGGCAGACAGA  550

seq1  TCTCCATGAGTTCAGGTCAGCCTAGTTTTTACAAAGTGAGTCCAGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGAGTTCAGGTCAGCCTAGTTTTTACAAAGTGAGTCCAGGACAG  600

seq1  CCAGGAGTGGTTACACTCAGAAACCCTGTCCCGAAAAACAAAACAAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTGGTTACACTCAGAAACCCTGTCCCGAAAAACAAAACAAAAGT  650

seq1  TATCTTCAGGGGCTTTGTGGGCACTGTATGTACATGGTATGCTTATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAGGGGCTTTGTGGGCACTGTATGTACATGGTATGCTTATATAC  700

seq1  ATGCAAGAAAAATAATCATATTCATAAAGTTCATTTTTAAAAACGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGAAAAATAATCATATTCATAAAGTTCATTTTTAAAAACGTTATT  750

seq1  TTTATCTATCAATACAACTTTTTAACAATTTCTGAATGCTCATAGGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATCAATACAACTTTTTAACAATTTCTGAATGCTCATAGGCACA  800

seq1  GTGGAGGTAGCTT-GGTAGCACTGCCTAAACTCAGTAAAGCTAAAGTGAC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTAGCTTGGGTAGCACTGCCTAAACTCAGTAAAGCTAAAGTGAC  850

seq1  TATTAATCACTAATCTAGTTAAATAGTAAAAACATATATTTTGTGTGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCACTAATCTAGTTAAATAGTAAAAACATATATTTTGTGTGTGA  900

seq1  GAATGGGTTTGTGTGGAGGCCAAAGGTCAATCACAGGGTAGCTCCCCAGG  949
      || ||||||||||||||||||||| |||||||||| ||||||||| ||||
seq2  GATTGGGTTTGTGTGGAGGCCAAA-GTCAATCACA-GGTAGCTCCTCAGG  948

seq1  AGCTGTTCACCTTGTGTTTGAGACAGGGTCTTTCATTGGGACCTTATGCT  999
      ||||||| | | ||||||||||||| |||| ||||||||||| |||||||
seq2  AGCTGTTTATC-TGTGTTTGAGACAAGGTC-TTCATTGGGACTTTATGCT  996

seq1  AGCCTAGCCAATTCAGCTAGACTGGTATTCCTAG  1033
      ||||||||||  ||||||||||||||||||||||
seq2  AGCCTAGCCA--TCAGCTAGACTGGTATTCCTAG  1028