BAC Information

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BAC

Clone NameB6Ng01-021M19
Chromosome9 (Build37)
Map Location 93,595,628 - 93,744,257
singlet/doubletdoublet
Overlap geneLOC674371
Upstream geneLOC100039944, LOC667009, LOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M19.bB6Ng01-021M19.g
ACCDH854205DH854206
length9081,066
definitionDH854205|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M19, 5' end.DH854206|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,595,628 - 93,596,531)(93,743,179 - 93,744,257)
sequence
gaattcttgtttcatccttacagctgccatgtcctctttatattcaggaa
gagattttttttttacattttttgagtgacatgttctctcagccctttgt
agtttctaccctgtgttttactcataatgtcaatctgtacacttaaattt
aatatataatctcaaaagtaatacttaaaagaaaatggcaatgatttaag
ttagaaggtgaagacaggaacttaagaccccagatcttgatgagttgaag
taattataatgctctttatctttggaagtttggggaaatcccctgcacat
cactagtaaccaggcttgctttcaccattatttactgatgttaaatgcat
gccattcttggagatttgtttgtgtttgtttgtttgttagttttgaacag
atgagtcttgtgatggtttgtatatccttggaccagggagtggcaccatc
tgaaggtgtggccttgttggaataggtgtgacctggttggaataggtgag
acctggttggaatggtgtgtcactgtgggtgtgggtataagatcctcacc
ctagttgcccggatgtcagtcttccactggcagcctttggatgaaaacat
agaactctcagctcctcctgtgccatgcctgcctggatactgccatgctc
ccacattgatgataatggactgaacctctgaacctgtaagccagccccaa
ttaaatgttgtttttttataagacttgccttggtcatggtgtcggttcac
agcagtaaaaccctaactaagacaagtctgcatgacatcactcaatatat
tgtttctgttcccacctatttatctgcaaagtttatgatttcatttctta
cagctagttgtattgcttagtgtttatgtaccacattttcattatctttc
agcactgt
gaattcctgcctaaccttggaggaaaaaagaactttctgtatcatctctc
caagaaaagtacagaaaaaaaaagaaagtttcaaaagtattacatgaagc
tctgtatagctgttgtcaactcttttgagagtatatccggtatctatagc
ttatttatctaactatgaaattaatcatatatcaactacagtatggaact
catttggatttctccagttttcccactgatatcatttctcattcacaata
tagataactgaggatgatatattgcattgagatttcctgtttccttagct
ttccgcaatctgaaacagttattcactctacattatatagattttagcat
tattggagactcgggttaatcattttgccgtgtctttatctactcagtta
tgccagtagtgctcacgggcactcattttatgttctgttttataaccaaa
cagctgagttatttatcatgttattcaagattttatatttatgttttatt
gtaagtctgcatatttttctctctgtgtgtgctagagattgaggccagag
cctcaagcattcactctaccatggaattatgtacacacatataaaaacaa
aagctaaaacaaacaaacaagaaaaaccctgtcattctcaatttctggct
ttagaatatcctctaggttcttgtttaattttattacctccccaaccttg
gggtagatgattctcatcagaacagtatcttctgtggttctagtatttac
aaatccatatcatataaaatgtttattctgtacacatggcatgtccaagt
ttctagcaattctttctaggaggagcactaaataaaaattacatatgcat
tgacctcagtcatgggttcacaaaaattatttcatttcctaggactctat
acagttcttcattccagtcagatccttcagatgtttactactttttcttg
tgctgtgtactgaatcaggcctgagtatagaatgctacccagtcattatg
ttacttagcacattccactggccggttgagtgatagccccttctagccta
tgctggacttgaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_93595628_93596531
seq2: B6Ng01-021M19.b_49_949

seq1  GAATTCTTGTTTCATCCTTACAGCTGCCATGTCCTCTTTATATTCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTCATCCTTACAGCTGCCATGTCCTCTTTATATTCAGGAA  50

seq1  GAGATTTTTTTTTTACATTTTTTGAGTGACATGTTCTCTCAGCCCTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTTTTTTACATTTTTTGAGTGACATGTTCTCTCAGCCCTTTGT  100

seq1  AGTTTCTACCCTGTGTTTTACTCATAATGTCAATCTGTACACTTAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTACCCTGTGTTTTACTCATAATGTCAATCTGTACACTTAAATTT  150

seq1  AATATATAATCTCAAAAGTAATACTTAAAAGAAAATGGCAATGATTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAATCTCAAAAGTAATACTTAAAAGAAAATGGCAATGATTTAAG  200

seq1  TTAGAAGGTGAAGACAGGAACTTAAGACCCCAGATCTTGATGAGTTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGTGAAGACAGGAACTTAAGACCCCAGATCTTGATGAGTTGAAG  250

seq1  TAATTATAATGCTCTTTATCTTTGGAAGTTTGGGGAAATCCCCTGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAATGCTCTTTATCTTTGGAAGTTTGGGGAAATCCCCTGCACAT  300

seq1  CACTAGTAACCAGGCTTGCTTTCACCATTATTTACTGATGTTAAATGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTAACCAGGCTTGCTTTCACCATTATTTACTGATGTTAAATGCAT  350

seq1  GCCATTCTTGGAGATTTGTTTGTGTTTGTTTGTTTGTTAGTTTTGAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTTGGAGATTTGTTTGTGTTTGTTTGTTTGTTAGTTTTGAACAG  400

seq1  ATGAGTCTTGTGATGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTTGTGATGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATC  450

seq1  TGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATAGGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATAGGTGAG  500

seq1  ACCTGGTTGGAATGGTGTGTCACTGTGGGTGTGGGTATAAGATCCTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTGGAATGGTGTGTCACTGTGGGTGTGGGTATAAGATCCTCACC  550

seq1  CTAGTTGCCCGGATGTCAGTCTTCCACTGGCAGCCTTTGGATGAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGCCCGGATGTCAGTCTTCCACTGGCAGCCTTTGGATGAAAACAT  600

seq1  AGAACTCTCAGCTCCTCCTGTGCCATGCCTGCCTGGATACTGCCATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTCAGCTCCTCCTGTGCCATGCCTGCCTGGATACTGCCATGCTC  650

seq1  CCACATTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAA  700

seq1  TTAAATGTTGTTTTTTTATAAGACTTGCCTTGGTCATGGTGTCGGTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTGTTTTTTTATAAGACTTGCCTTGGTCATGGTGTCGGTTCAC  750

seq1  AGCAGTAAAACCCTAACTAAGACAAGTCTGCATGACATCACTCAATATAA  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCAGTAAAACCCTAACTAAGACAAGTCTGCATGACATCACTCAATAT-A  799

seq1  TTGTTTCTGTTCCCACCTATTTATCTGCAAAGTTTATGATTTCATTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTGTTCCCACCTATTTATCTGCAAAGTTTATGATTTCATTTCTT  849

seq1  ACAGCTAGTTAGTATTGCATAGTGTTTATGTACCACATTTTCATTATCCT  900
      |||||||||| ||||||| |||||||||||||||||||||||||||| ||
seq2  ACAGCTAGTT-GTATTGCTTAGTGTTTATGTACCACATTTTCATTAT-CT  897

seq1  TTCA  904
      ||||
seq2  TTCA  901

seq1: chr9_93743179_93744257
seq2: B6Ng01-021M19.g_70_1135 (reverse)

seq1  GAGTTCAAGTCCAGCATTAGCTAGAAGGAGACTATCACTCAACCCGACAG  50
      |||||||||||||||||  ||||||||| | ||||||||||||| | |||
seq2  GAGTTCAAGTCCAGCATAGGCTAGAAGG-GGCTATCACTCAACCGGCCAG  49

seq1  TTGGAATGTTGCTAAGTAACATAATGACTGGGTAGCATTCTATACTCAAG  100
       ||||||| |||||||||||||||||||||||||||||||||||||||  
seq2  -TGGAATG-TGCTAAGTAACATAATGACTGGGTAGCATTCTATACTCA--  95

seq1  GCCCTGATTTCAGTACACAGCACCAGAAAAAGTAGTAAACAGTCTTGAAG  150
      | ||||| ||||||||||||||| ||||||||||||||||| || |||||
seq2  GGCCTGA-TTCAGTACACAGCACAAGAAAAAGTAGTAAACA-TC-TGAAG  142

seq1  GATTCTGACTGGAATTGAAGAACTTGTATAGAGTCCTAGGAAATGAAATT  200
      || ||||||||||| |||||||| ||||||||||||||||||||||||| 
seq2  GA-TCTGACTGGAA-TGAAGAAC-TGTATAGAGTCCTAGGAAATGAAATA  189

seq1  ATTTTTGTGAACCCATGACTGAGGTCAATGCATATGTAATTTTTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  ATTTTTGTGAACCCATGACTGAGGTCAATGCATATGTAATTTTT--ATTT  237

seq1  AGTGCTCCTCCTAGAAAGAATTGCTAGAAACTTGGACATGCCATGTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCTCCTAGAAAGAATTGCTAGAAACTTGGACATGCCATGTGTAC  287

seq1  AGAATAAACATTTTATATGATATGGATTTGTAAATACTAGAACCACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAACATTTTATATGATATGGATTTGTAAATACTAGAACCACAGAA  337

seq1  GATACTGTTCTGATGAGAATCATCTACCCCAAGGTTGGGGAGGTAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTTCTGATGAGAATCATCTACCCCAAGGTTGGGGAGGTAATAAA  387

seq1  ATTAAACAAGAACCTAGAGGATATTCTAAAGCCAGAAATTGAGAATGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAGAACCTAGAGGATATTCTAAAGCCAGAAATTGAGAATGACA  437

seq1  GGGTTTTTCTTGTTTGTTTGTTTTAGCTTTTGTTTTTATATGTGTGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTCTTGTTTGTTTGTTTTAGCTTTTGTTTTTATATGTGTGTACA  487

seq1  TAATTCCATGGTAGAGTGAATGCTTGAGGCTCTGGCCTCAATCTCTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCATGGTAGAGTGAATGCTTGAGGCTCTGGCCTCAATCTCTAGCA  537

seq1  CACACAGAGAGAAAAATATGCAGACTTACAATAAAACATAAATATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGAGAAAAATATGCAGACTTACAATAAAACATAAATATAAAAT  587

seq1  CTTGAATAACATGATAAATAACTCAGCTGTTTGGTTATAAAACAGAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAACATGATAAATAACTCAGCTGTTTGGTTATAAAACAGAACAT  637

seq1  AAAATGAGTGCCCGTGAGCACTACTGGCATAACTGAGTAGATAAAGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGTGCCCGTGAGCACTACTGGCATAACTGAGTAGATAAAGACAC  687

seq1  GGCAAAATGATTAACCCGAGTCTCCAATAATGCTAAAATCTATATAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATGATTAACCCGAGTCTCCAATAATGCTAAAATCTATATAATGT  737

seq1  AGAGTGAATAACTGTTTCAGATTGCGGAAAGCTAAGGAAACAGGAAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAATAACTGTTTCAGATTGCGGAAAGCTAAGGAAACAGGAAATCT  787

seq1  CAATGCAATATATCATCCTCAGTTATCTATATTGTGAATGAGAAATGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAATATATCATCCTCAGTTATCTATATTGTGAATGAGAAATGATA  837

seq1  TCAGTGGGAAAACTGGAGAAATCCAAATGAGTTCCATACTGTAGTTGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGAAAACTGGAGAAATCCAAATGAGTTCCATACTGTAGTTGATA  887

seq1  TATGATTAATTTCATAGTTAGATAAATAAGCTATAGATACCGGATATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTAATTTCATAGTTAGATAAATAAGCTATAGATACCGGATATACT  937

seq1  CTCAAAAGAGTTGACAACAGCTATACAGAGCTTCATGTAATACTTTTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGAGTTGACAACAGCTATACAGAGCTTCATGTAATACTTTTGAA  987

seq1  ACTTTCTTTTTTTTTCTGTACTTTTCTTGGAGAGATGATACAGAAAGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTTTTTTTCTGTACTTTTCTTGGAGAGATGATACAGAAAGTTC  1037

seq1  TTTTTTCCTCCAAGGTTAGGCAGGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  TTTTTTCCTCCAAGGTTAGGCAGGAATTC  1066