BAC Information

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BAC

Clone NameB6Ng01-022F13
Chromosome9 (Build37)
Map Location 41,581,873 - 41,713,279
singlet/doubletdoublet
Overlap gene6720432D03Rik
Upstream gene9030425E11Rik, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
Downstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022F13.bB6Ng01-022F13.g
ACCDH854593DH854594
length9301,008
definitionDH854593|Mus musculus domesticus DNA, BAC clone: B6Ng01-022F13, 5' end.DH854594|Mus musculus domesticus DNA, BAC clone: B6Ng01-022F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,712,711 - 41,713,279)(41,581,873 - 41,582,884)
sequence
gaattctttctgtttgtcccaggtcagacatattctagtcagactttgtg
taatgatggcgtgagagcgtgctacgctctctggtcgagtcaactggaca
agccgaaaggcttaaaagtcactcatgaggcaaaagagtttcaaggaagc
tctcctcctggaggctagtgttctctacccatacattaatttttcattcc
cgagttccagtaccacgctagtctagagtatggatccacgtgctctcttt
cagtatttctctataagtgctctgacatgtctaaagccttccgccagtgt
tccaacggtccaagggcgtccttgaccaagatctagggtttagaattcag
caagattgtaaaagctaagtcactcccttacacaggaatttaccatcact
taggaagaaggaagtttcagaacaaaggagaaaccagaatagatactata
gcagagttacacccatacacaagtatttacaatggcctaaggggaaggtg
gactatacaagagactaaaataggaactgtggcaaggactcgaagccctt
gaccctggcttctaagattagtgaattttaggtggagcccttgttgatcc
cagctgttatcaatgtattctatcctgggtggttcccgttagaccttttg
ggtttgcattcctctgttttatgtaagattccagttacctcaattgtacc
ttgcgaatatgtcacccaacttccttattgtcctctgcataaaaagtctg
atgctcgagttgtaaaattacattcagattccacacaaactctcctgcgt
gtgtgtctgtctgtcatcatccacgctttgcccacccgcgtcgagagacc
ccgttccacgcagacatagggacccaaaagtctgcggcaagagcggaagc
agattttgagagatatttttatagagagga
gaattctcgcgtacaccagattttgttgcgcaaaccttgtgccccaagtt
atccctgattgggtaataaagctgcctacagcctgggttgggcagaagag
agagggtagagcaaaggttcctgcctgggggagtcttaggaagaagaaac
tagctgtggggtaggtagatagtgagcacatggcgatgagggctggcctg
atggagtaggagtggcccaggcagaacatggcaagtgatacctcaggggt
cactacaggaaagtagtcaaaatagcatagagggttgatacctacccaga
tctcgtgcttctaagctgaaggtttctatgtcttttatctggaaacaata
tagtctgaagtgtaatagatatttaaagacaacatggggtgtggcaaccc
ccagagtaataagtaccacaatacttgactatctaagtaccattctttcc
ctcagattctgcattcgaacatcaccatggcttcagtcatcttactcaac
tctttgaagaacagtagtattcttgttttccctggcttcatgcttttcct
ctgtcttacttttctatccctgtctcaagcgtcagccttgtcttttgttt
ttcagacatgtcataattttttctgaaaggcaaatatagctcaatatcat
tggaccgatgactcgcaagtttccacatctatctttaccccaaaatagta
tccagtgagagatgtccaggtagaatgaaactatgatctttaaaatacca
tgccataactttcctatttataacctttcctgtctttccagatatctttt
gtgagcacaaaaattcatccctttgacttgggattataaatttaattcat
ttattcattacccttgtccaataagcatttgccagtgtgtatctgcatgg
agtctaggcaaggcagaggtatacagagcaaaggaccttccttgagtctg
acacagaaggttttccatccatcttatccccctcacacaaattctctccc
aacttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41712711_41713279
seq2: B6Ng01-022F13.b_41_609 (reverse)

seq1  AATCTTAGAAGCCAGGGTCAAGGGCTTCGAGTCCTTGCCACAGTTCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGAAGCCAGGGTCAAGGGCTTCGAGTCCTTGCCACAGTTCCTAT  50

seq1  TTTAGTCTCTTGTATAGTCCACCTTCCCCTTAGGCCATTGTAAATACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTCTTGTATAGTCCACCTTCCCCTTAGGCCATTGTAAATACTTG  100

seq1  TGTATGGGTGTAACTCTGCTATAGTATCTATTCTGGTTTCTCCTTTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGTGTAACTCTGCTATAGTATCTATTCTGGTTTCTCCTTTGTTC  150

seq1  TGAAACTTCCTTCTTCCTAAGTGATGGTAAATTCCTGTGTAAGGGAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTCCTTCTTCCTAAGTGATGGTAAATTCCTGTGTAAGGGAGTGA  200

seq1  CTTAGCTTTTACAATCTTGCTGAATTCTAAACCCTAGATCTTGGTCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTTTACAATCTTGCTGAATTCTAAACCCTAGATCTTGGTCAAGG  250

seq1  ACGCCCTTGGACCGTTGGAACACTGGCGGAAGGCTTTAGACATGTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTTGGACCGTTGGAACACTGGCGGAAGGCTTTAGACATGTCAGAG  300

seq1  CACTTATAGAGAAATACTGAAAGAGAGCACGTGGATCCATACTCTAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATAGAGAAATACTGAAAGAGAGCACGTGGATCCATACTCTAGACT  350

seq1  AGCGTGGTACTGGAACTCGGGAATGAAAAATTAATGTATGGGTAGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGTACTGGAACTCGGGAATGAAAAATTAATGTATGGGTAGAGAAC  400

seq1  ACTAGCCTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTG  450

seq1  ACTTTTAAGCCTTTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAGCCTTTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCA  500

seq1  CGCTCTCACGCCATCATTACACAAAGTCTGACTAGAATATGTCTGACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTCACGCCATCATTACACAAAGTCTGACTAGAATATGTCTGACCTG  550

seq1  GGACAAACAGAAAGAATTC  569
      |||||||||||||||||||
seq2  GGACAAACAGAAAGAATTC  569

seq1: chr9_41581873_41582884
seq2: B6Ng01-022F13.g_68_1075

seq1  GAATTCTCGCGTACACCAGATTTTGTTGCGCAAACCTTGTGCCCCAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCGTACACCAGATTTTGTTGCGCAAACCTTGTGCCCCAAGTT  50

seq1  ATCCCTGATTGGGTAATAAAGCTGCCTACAGCCTGGGTTGGGCAGAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGATTGGGTAATAAAGCTGCCTACAGCCTGGGTTGGGCAGAAGAG  100

seq1  AGAGGGTAGAGCAAAGGTTCCTGCCTGGGGGAGTCTTAGGAAGAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTAGAGCAAAGGTTCCTGCCTGGGGGAGTCTTAGGAAGAAGAAAC  150

seq1  TAGCTGTGGGGTAGGTAGATAGTGAGCACATGGCGATGAGGGCTGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGGGGTAGGTAGATAGTGAGCACATGGCGATGAGGGCTGGCCTG  200

seq1  ATGGAGTAGGAGTGGCCCAGGCAGAACATGGCAAGTGATACCTCAGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTAGGAGTGGCCCAGGCAGAACATGGCAAGTGATACCTCAGGGGT  250

seq1  CACTACAGGAAAGTAGTCAAAATAGCATAGAGGGTTGATACCTACCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGGAAAGTAGTCAAAATAGCATAGAGGGTTGATACCTACCCAGA  300

seq1  TCTCGTGCTTCTAAGCTGAAGGTTTCTATGTCTTTTATCTGGAAACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGCTTCTAAGCTGAAGGTTTCTATGTCTTTTATCTGGAAACAATA  350

seq1  TAGTCTGAAGTGTAATAGATATTTAAAGACAACATGGGGTGTGGCAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGAAGTGTAATAGATATTTAAAGACAACATGGGGTGTGGCAACCC  400

seq1  CCAGAGTAATAAGTACCACAATACTTGACTATCTAAGTACCATTCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTAATAAGTACCACAATACTTGACTATCTAAGTACCATTCTTTCC  450

seq1  CTCAGATTCTGCATTCGAACATCACCATGGCTTCAGTCATCTTACTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTCTGCATTCGAACATCACCATGGCTTCAGTCATCTTACTCAAC  500

seq1  TCTTTGAAGAACAGTAGTATTCTTGTTTTCCCTGGCTTCATGCTTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGAACAGTAGTATTCTTGTTTTCCCTGGCTTCATGCTTTTCCT  550

seq1  CTGTCTTACTTTTCTATCCCTGTCTCAAGCGTCAGCCTTGTCTTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTACTTTTCTATCCCTGTCTCAAGCGTCAGCCTTGTCTTTTGTTT  600

seq1  TTCAGACATGTCATAATTTTTTCTGAAAGGCAAATATAGCTCAATATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACATGTCATAATTTTTTCTGAAAGGCAAATATAGCTCAATATCAT  650

seq1  TGGACCGATGACTCGCAAGTTTCCACATCTATCTTTACCCCAAAATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCGATGACTCGCAAGTTTCCACATCTATCTTTACCCCAAAATAGTA  700

seq1  TCCAGTGAGAGATGTCCAGGTAGAATGAAACTATGATCTTTAAAATACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGAGAGATGTCCAGGTAGAATGAAACTATGATCTTTAAAATACCA  750

seq1  TGCCATAAC-TTCCTATTTATAACC-TTCCTGTCTTTCCAGATATC-TTT  797
      ||||||||| ||||||||||||||| |||||||||||||||||||| |||
seq2  TGCCATAACTTTCCTATTTATAACCTTTCCTGTCTTTCCAGATATCTTTT  800

seq1  GTGAGCACATAAATTTCATCCCTTTGACTTGTGATTCATAAA-TCAATTC  846
      ||||||||| ||| ||||||||||||||||| |||| ||||| | |||||
seq2  GTGAGCACA-AAAATTCATCCCTTTGACTTGGGATT-ATAAATTTAATTC  848

seq1  ATTTATTCATTA-CCTTGTCCAATAAGCATTTGCCAAGTGTGTATTCTGC  895
      |||||||||||| |||||||||||||||||||||| |||||||| |||||
seq2  ATTTATTCATTACCCTTGTCCAATAAGCATTTGCC-AGTGTGTA-TCTGC  896

seq1  ATGGAGTTCTAGGCAAGGCAGAGGCAGTACAAGAGCAAATGACCTACCTT  945
      |||||| ||||||||||||||||| | ||| |||||||| ||||| ||||
seq2  ATGGAG-TCTAGGCAAGGCAGAGGTA-TAC-AGAGCAAAGGACCTTCCTT  943

seq1  GAGTCTGACACTGAAGGTTTTCCATCCATCATTATCCCCCTCACACAAAC  995
      ||||||||||| |||||||||||||||||| |||||||||||||||||| 
seq2  GAGTCTGACACAGAAGGTTTTCCATCCATC-TTATCCCCCTCACACAAAT  992

seq1  TCTTCTCCCAACATTTC  1012
      || ||||||||| ||||
seq2  TC-TCTCCCAACTTTTC  1008