BAC Information

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BAC

Clone NameB6Ng01-023E19
Chromosome9 (Build37)
Map Location 45,843,530 - 45,927,464
singlet/doubletdoublet
Overlap geneBC033915
Upstream geneEva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik
Downstream geneApoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023E19.bB6Ng01-023E19.g
ACCDH855259DH855260
length6781,095
definitionDH855259|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E19, 5' end.DH855260|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,843,530 - 45,844,206)(45,926,353 - 45,927,464)
sequence
gaattcagctaaccttggaaacagggttttcttagcagcctcgaggttag
ggaggggatgatacggtgctaaggacgaggcctggcggtggctagtttgg
acctcacagcagagccttcttcctttggagacctcttggaattctaggca
ggaggtaactcatcccacagctggggtgcagagaggaagatgcaagctga
gctgactgactaatacggttcctactgtctacagctcacagtccctctgc
ctttactgccatctgcagagccccactccatcctctgtgcttcatggagt
tccttctaggccctccacagcagtgcagggtgagagtccccagttccatc
gagggcagcaggtgttaagctgtaacttgttcagatccttatgtgtttta
agtagcggagctgagaggcataggtgggtctgtattattgtaaactcttg
ctgatagtcaggcagctgttgccagagctgaattccagtttcaactgtac
ctagccagaatctctacagtgttctccataaaggtgtcactgtgtagcct
gctgtggatgaaagactagaagaaaccccaaggaacataattaatggagg
cactgaatatgtatattacataggggtagggctggtgagacggttttagt
ggttaagagacacaccaccagccgggcg
gaattctttttaaattggcatctggtaagaaagaaattaagttcggctca
tgccaaagccagaacttccctcctcgctctcgggggttctcacttctgaa
accacagtggctttaacccttgcctccattctgcagcacagggatgcaca
cacagaaggaagatgaaagaagaattagtggctgcttcccccaaagggag
tcattctcctgcttattctgacccgacattctgaggaaagacacggtggt
agaaccaagacaccaggagaaaattcaactctaagatcaaaccaaccaca
gtttcccagcaaaaacccctggtgggggtttcagtgaaacactatgacaa
atacacagctttaaaaaaaaaaaaaaaaaaaaaaacctccaacagaggaa
agcacagtctgtcttctttcctcgggagaagggggcatccttcaaggaaa
gaagcggcccctctcactgaaatgtcttctgctagttccactgtgtcctt
aaaccttagggaggtgagtgttctcttacatgaaggcaattttttggcct
gtttctagaacaaattttatctcctctagattgttctcagctcacctcta
gaattaccgaatggtctagatatgtctaatcgtacacagtagccaccagc
cacatatggttacatagcatttgaatgtagacagtgcacacaaatatata
ccatttatcacattagtattaccaaaggactgtaagctcaccatcctacc
tttctattgattacatgtggaaataagagtttagatattaagttaaatag
aatatattactcaaaattaactctatatcctttactttttaaaaatgtgt
atactgccaagcttggtgccatgggcctacagttccactacttgagaagc
tgagcaggagatcacatttcatggatattggtgggactctcaaacagagg
gaggagagatttcatatgacatatatcctctctagtggatagcactggtc
taggtggtctaacagctaagcaatccagaaacatcatttcaggtaactac
tgagacatgtgttgctggaatccggcaatctagctatactctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_45843530_45844206
seq2: B6Ng01-023E19.b_42_719

seq1  GAATTCAGCTAACCTTGGAAACAGGGTTTTCTTAGCAGCCTCGAGGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTAACCTTGGAAACAGGGTTTTCTTAGCAGCCTCGAGGTTAG  50

seq1  GGAGGGGATGATACGGTGCTAAGGACGAGGCCTGGCGGTGGCTAGTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGATGATACGGTGCTAAGGACGAGGCCTGGCGGTGGCTAGTTTGG  100

seq1  ACCTCACAGCAGAGCCTTCTTCCTTTGGAGACCTCTTGGAATTCTAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACAGCAGAGCCTTCTTCCTTTGGAGACCTCTTGGAATTCTAGGCA  150

seq1  GGAGGTAACTCATCCCACAGCTGGGGTGCAGAGAGGAAGATGCAAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAACTCATCCCACAGCTGGGGTGCAGAGAGGAAGATGCAAGCTGA  200

seq1  GCTGACTGACTAATACGGTTCCTACTGTCTACAGCTCACAGTCCCTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGACTAATACGGTTCCTACTGTCTACAGCTCACAGTCCCTCTGC  250

seq1  CTTTACTGCCATCTGCAGAGCCCCACTCCATCCTCTGTGCTTCATGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGCCATCTGCAGAGCCCCACTCCATCCTCTGTGCTTCATGGAGT  300

seq1  TCCTTCTAGGCCCTCCACAGCAGTGCAGGGTGAGAGTCCCCAGTTCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGGCCCTCCACAGCAGTGCAGGGTGAGAGTCCCCAGTTCCATC  350

seq1  GAGGGCAGCAGGTGTTAAGCTGTAACTTGTTCAGATCCTTATGTGTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGCAGGTGTTAAGCTGTAACTTGTTCAGATCCTTATGTGTTTTA  400

seq1  AGTAGCGGAGCTGAGAGGCATAGGTGGGTCTGTATTATTGTAAACTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCGGAGCTGAGAGGCATAGGTGGGTCTGTATTATTGTAAACTCTTG  450

seq1  CTGATAGTCAGGCAGCTGTTGCCAGAGCTGAATTCCAGTTTCAACTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTCAGGCAGCTGTTGCCAGAGCTGAATTCCAGTTTCAACTGTAC  500

seq1  CTAGCCAGAATCTCTACAGTGTTCTCCATAAAGGTGTCACTGTGTAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGAATCTCTACAGTGTTCTCCATAAAGGTGTCACTGTGTAGCCT  550

seq1  GCTGTGGATGAAAGACTAGAAGAAACCCCAAGGAACATAATTAATGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGATGAAAGACTAGAAGAAACCCCAAGGAACATAATTAATGGAGG  600

seq1  CACTGAATATGTATATTACATAGGGGTAGGGCTGGTGAGACGG-TTTAGT  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACTGAATATGTATATTACATAGGGGTAGGGCTGGTGAGACGGTTTTAGT  650

seq1  GGTTAAGAGACACACCACCAGCCGGGCG  677
      ||||||||||||||||||||||||||||
seq2  GGTTAAGAGACACACCACCAGCCGGGCG  678

seq1: chr9_45926353_45927464
seq2: B6Ng01-023E19.g_70_1164 (reverse)

seq1  AACAGAGTA-GCCTAGCTTGCCGGATGCTCAGC-ACACATGTCCTCAGTA  48
      |||||||||   |||| ||||||||| | |||| |||||||| |||||||
seq2  AACAGAGTATAGCTAGATTGCCGGATTC-CAGCAACACATGT-CTCAGTA  48

seq1  GTTACCCTGAATGGATGTCTCCTGCGATTGCTTAGCTGTTAGATCACCTA  98
      |||| ||||||  ||||| | ||| |||||||||||||||||| ||||||
seq2  GTTA-CCTGAAATGATGT-TTCTG-GATTGCTTAGCTGTTAGACCACCTA  95

seq1  GACCAGTGCTATCCACTAGAAGAGGATTATATGTCATATTGAAATCTTCT  148
      ||||||||||||||||||| |||||| ||||||||||| ||||||| |||
seq2  GACCAGTGCTATCCACTAG-AGAGGA-TATATGTCATA-TGAAATC-TCT  141

seq1  CCTCCCCTTCTGTTTTGAGAGTCCCACCAATTATCCATGGAATTGTGATT  198
      ||||||  |||| ||||||||||||||||| ||||||| ||| ||||| |
seq2  CCTCCC--TCTG-TTTGAGAGTCCCACCAA-TATCCAT-GAAATGTGA-T  185

seq1  CTCCTGCCTCAGCTTCTCAAAGTAGTTGGAACTGTAGGCCCATGGCACCA  248
      |||||| ||||||||||| |||||| ||||||||||||||||||||||||
seq2  CTCCTG-CTCAGCTTCTC-AAGTAG-TGGAACTGTAGGCCCATGGCACCA  232

seq1  AGCTTGGCAGTATACACATTTTTAAAAAGTTAAAGGATATAGAGTTAATT  298
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTTGGCAGTATACACATTTTTAAAAAG-TAAAGGATATAGAGTTAATT  281

seq1  TTGAGTAATATATTCTATTTAACTTAATATCTAAACTCTTATTTCCACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAATATATTCTATTTAACTTAATATCTAAACTCTTATTTCCACAT  331

seq1  GTAATCAATAGAAAGGTAGGATGGTGAGCTTACAGTCCTTTGGTAATACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAATAGAAAGGTAGGATGGTGAGCTTACAGTCCTTTGGTAATACT  381

seq1  AATGTGATAAATGGTATATATTTGTGTGCACTGTCTACATTCAAATGCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATAAATGGTATATATTTGTGTGCACTGTCTACATTCAAATGCTA  431

seq1  TGTAACCATATGTGGCTGGTGGCTACTGTGTACGATTAGACATATCTAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCATATGTGGCTGGTGGCTACTGTGTACGATTAGACATATCTAGA  481

seq1  CCATTCGGTAATTCTAGAGGTGAGCTGAGAACAATCTAGAGGAGATAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGGTAATTCTAGAGGTGAGCTGAGAACAATCTAGAGGAGATAAAA  531

seq1  TTTGTTCTAGAAACAGGCCAAAAAATTGCCTTCATGTAAGAGAACACTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTAGAAACAGGCCAAAAAATTGCCTTCATGTAAGAGAACACTCA  581

seq1  CCTCCCTAAGGTTTAAGGACACAGTGGAACTAGCAGAAGACATTTCAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTAAGGTTTAAGGACACAGTGGAACTAGCAGAAGACATTTCAGTG  631

seq1  AGAGGGGCCGCTTCTTTCCTTGAAGGATGCCCCCTTCTCCCGAGGAAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCCGCTTCTTTCCTTGAAGGATGCCCCCTTCTCCCGAGGAAAGA  681

seq1  AGACAGACTGTGCTTTCCTCTGTTGGAGGTTTTTTTTTTTTTTTTTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACTGTGCTTTCCTCTGTTGGAGGTTTTTTTTTTTTTTTTTTTTT  731

seq1  TTAAAGCTGTGTATTTGTCATAGTGTTTCACTGAAACCCCCACCAGGGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTGTGTATTTGTCATAGTGTTTCACTGAAACCCCCACCAGGGGT  781

seq1  TTTTGCTGGGAAACTGTGGTTGGTTTGATCTTAGAGTTGAATTTTCTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGGGAAACTGTGGTTGGTTTGATCTTAGAGTTGAATTTTCTCCT  831

seq1  GGTGTCTTGGTTCTACCACCGTGTCTTTCCTCAGAATGTCGGGTCAGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTGGTTCTACCACCGTGTCTTTCCTCAGAATGTCGGGTCAGAAT  881

seq1  AAGCAGGAGAATGACTCCCTTTGGGGGAAGCAGCCACTAATTCTTCTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAGAATGACTCCCTTTGGGGGAAGCAGCCACTAATTCTTCTTTC  931

seq1  ATCTTCCTTCTGTGTGTGCATCCCTGTGCTGCAGAATGGAGGCAAGGGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTTCTGTGTGTGCATCCCTGTGCTGCAGAATGGAGGCAAGGGTT  981

seq1  AAAGCCACTGTGGTTTCAGAAGTGAGAACCCCCGAGAGCGAGGAGGGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACTGTGGTTTCAGAAGTGAGAACCCCCGAGAGCGAGGAGGGAAG  1031

seq1  TTCTGGCTTTGGCATGAGCCGAACTTAATTTCTTTCTTACCAGATGCCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTTTGGCATGAGCCGAACTTAATTTCTTTCTTACCAGATGCCAA  1081

seq1  TTTAAAAAGAATTC  1112
      ||||||||||||||
seq2  TTTAAAAAGAATTC  1095