BAC Information

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BAC

Clone NameB6Ng01-023E20
Chromosome9 (Build37)
Map Location 72,447,410 - 72,499,736
singlet/doubletdoublet
Overlap geneRfxdc2
Upstream geneLOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik
Downstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023E20.bB6Ng01-023E20.g
ACCDH855261DH855262
length5531,008
definitionDH855261|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E20, 5' end.DH855262|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,499,215 - 72,499,736)(72,447,410 - 72,448,424)
sequence
ctaactcagcagtgcctgacagtgtgaggacaggaaacacagtccatgag
tgagtcaccagttatcatgatgagtccagcccactgtcaccaacttattc
tgttcaaccaacttattgcctggtatgttttccttcagatgtcagctcct
ccccaatccatcaatttcttaattttttagaaggtagggatattcaagac
agagtttctctgtgtatccctggctgtcttggaacttgctctgtagacca
ggctggctttgaactgagagattctcctgcctctgcctcctgagtcctag
gattaaagtcatgtgccaccgttgcctggtatttttcttttttctttttt
tttaaagatgtatttatttattatatgtaagtacactgtagctgtcttca
gactcaccagaagagggtgtcagatctcattacggatggttgtgagccac
catgtggttgctgggatttgaactccggacctttggaagagcagtcgggt
actcttacccactgagccatctcaccagcccgcctggtatttttcttaat
ctt
gaattctttgtgttttttcacttcttgtattatttctgcttgtactttta
ttcttaatctcttttgattttctcttgttttatttcatattgattttttt
tgagacaatgtttctctgtgtggtttgtttttttttttaatagtttcttc
ttgtgtctggtaatcttcctgttgtctgtactgaatttattgaaaaagtg
tttcatatagcccaggatgacctgaatgaatttactatgtagctgaggct
gtccatgaatccttgaccttcctatctctacctccacctctttctgccat
gttcagctactttctgtttaatatttaaatgtggcaagcaaaaaaaaagc
aaaattctatgtaatataatagtttcatattgcatccattttcttgcaaa
tactttatttatccatacagttataaaagtttttattgtaaaaatgtacc
actttttttagtcattcatttaatgatggctgtcagtaataaagtcctgt
gaaaccaatgcaaagttctttttctacctaatacgaatatcgatgctatg
aatataaacgtataaggatctctaaagtattagagtccttcaggtctata
tcaaagagtggtagagctgggccatatgatattaatatttttattttttt
aacttttaagaaatgtattatgatttatgggtacaagttgccattgtcag
tgtttttattacagcaacagaaagcaaaacagaaaaagcatcaggtgctt
tccctgctgaaccatgtggctggcgctggcttcaggtttttggaggagcc
tccatactgatttccacagcagctacataagttatatgctcctacctaca
gctgatttttgagtcccctttcccacaccctggggatacctgatttcatc
atgtttatattaagtctgtgtgctaatacctggctaaattaaaatgttgc
atctttgaacctttagtgtaattgctaatgagtatgaatgaatacctgga
tttgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_72499215_72499736
seq2: B6Ng01-023E20.b_76_597 (reverse)

seq1  AAGATTAAGAAAAATACCAGGCGGGCTGGTGAGATGGCTCAGTGGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAGAAAAATACCAGGCGGGCTGGTGAGATGGCTCAGTGGGTAAG  50

seq1  AGTACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCAC  100

seq1  ATGGTGGCTCACAACCATCCGTAATGAGATCTGACACCCTCTTCTGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGGTGGCTCACAACCATCCGTAATGAGATCTGACACCCTCTTCTGGTGA  150

seq1  GTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATACATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATACATCTTT  200

seq1  AAAAAAAAAGAAAAAAGAAAAATACCAGGCAACGGTGGCACATGACTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAAAAAGAAAAATACCAGGCAACGGTGGCACATGACTTTA  250

seq1  ATCCTAGGACTCAGGAGGCAGAGGCAGGAGAATCTCTCAGTTCAAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGACTCAGGAGGCAGAGGCAGGAGAATCTCTCAGTTCAAAGCCA  300

seq1  GCCTGGTCTACAGAGCAAGTTCCAAGACAGCCAGGGATACACAGAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGCAAGTTCCAAGACAGCCAGGGATACACAGAGAAAC  350

seq1  TCTGTCTTGAATATCCCTACCTTCTAAAAAATTAAGAAATTGATGGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGAATATCCCTACCTTCTAAAAAATTAAGAAATTGATGGATTG  400

seq1  GGGAGGAGCTGACATCTGAAGGAAAACATACCAGGCAATAAGTTGGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGCTGACATCTGAAGGAAAACATACCAGGCAATAAGTTGGTTGA  450

seq1  ACAGAATAAGTTGGTGACAGTGGGCTGGACTCATCATGATAACTGGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAAGTTGGTGACAGTGGGCTGGACTCATCATGATAACTGGTGAC  500

seq1  TCACTCATGGACTGTGTTTCCT  522
      ||||||||||||||||||||||
seq2  TCACTCATGGACTGTGTTTCCT  522

seq1: chr9_72447410_72448424
seq2: B6Ng01-023E20.g_68_1075

seq1  GAATTCTTTGTGTTTTTTCACTTCTTGTATTATTTCTGCTTGTACTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGTTTTTTCACTTCTTGTATTATTTCTGCTTGTACTTTTA  50

seq1  TTCTTAATCTCTTTTGATTTTCTCTTGTTTTATTTCATATTGATTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATCTCTTTTGATTTTCTCTTGTTTTATTTCATATTGATTTTTTT  100

seq1  TGAGACAATGTTTCTCTGTGTGGTTTGTTTTTTTTTTTAATAGTTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATGTTTCTCTGTGTGGTTTGTTTTTTTTTTTAATAGTTTCTTC  150

seq1  TTGTGTCTGGTAATCTTCCTGTTGTCTGTACTGAATTTATTGAAAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGGTAATCTTCCTGTTGTCTGTACTGAATTTATTGAAAAAGTG  200

seq1  TTTCATATAGCCCAGGATGACCTGAATGAATTTACTATGTAGCTGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATAGCCCAGGATGACCTGAATGAATTTACTATGTAGCTGAGGCT  250

seq1  GTCCATGAATCCTTGACCTTCCTATCTCTACCTCCACCTCTTTCTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGAATCCTTGACCTTCCTATCTCTACCTCCACCTCTTTCTGCCAT  300

seq1  GTTCAGCTACTTTCTGTTTAATATTTAAATGTGGCAAGCAAAAAAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTACTTTCTGTTTAATATTTAAATGTGGCAAGCAAAAAAAAAGC  350

seq1  AAAATTCTATGTAATATAATAGTTTCATATTGCATCCATTTTCTTGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTATGTAATATAATAGTTTCATATTGCATCCATTTTCTTGCAAA  400

seq1  TACTTTATTTATCCATACAGTTATAAAAGTTTTTATTGTAAAAATGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTTATCCATACAGTTATAAAAGTTTTTATTGTAAAAATGTACC  450

seq1  ACTTTTTTTAGTCATTCATTTAATGATGGCTGTCAGTAATAAAGTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTAGTCATTCATTTAATGATGGCTGTCAGTAATAAAGTCCTGT  500

seq1  GAAACCAATGCAAAGTTCTTTTTCTACCTAATACGAATATCGATGCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAATGCAAAGTTCTTTTTCTACCTAATACGAATATCGATGCTATG  550

seq1  AATATAAACGTATAAGGATCTCTAAAGTATTAGAGTCCTTCAGGTCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAACGTATAAGGATCTCTAAAGTATTAGAGTCCTTCAGGTCTATA  600

seq1  TCAAAGAGTGGTAGAGCTGGGCCATATGATATTAATATTTTTATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGTGGTAGAGCTGGGCCATATGATATTAATATTTTTATTTTTTT  650

seq1  AACTTTTAAGAAATGTATTATGATTTATGGGTACAAGTTGCCATTGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAGAAATGTATTATGATTTATGGGTACAAGTTGCCATTGTCAG  700

seq1  TGTTTTTATTACAGCAACAGAAAGCAAAACAGAAAAAGCATCAGGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTACAGCAACAGAAAGCAAAACAGAAAAAGCATCAGGTGCTT  750

seq1  TCCCTGCTGAACCATGTGGCTGGCGCTGGCTTCAGGTTTTTGGAGGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTGAACCATGTGGCTGGCGCTGGCTTCAGGTTTTTGGAGGAGCC  800

seq1  TCCATACTGATTTCCACAGCAGCTACATAAGTTATATGCTCCTACCTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTGATTTCCACAGCAGCTACATAAGTTATATGCTCCTACCTACA  850

seq1  GCTGATTTTTGAGTCCCCTTTCCCACACCCTGGGGATAACCTGATTTCAT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTGATTTTTGAGTCCCCTTTCCCACACCCTGGGGAT-ACCTGATTTCAT  899

seq1  CATGTTTTATATTAAGTCTGTTGTGCTAATACCTGGCTAAATTAAAATGT  950
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATG-TTTATATTAAGTCTG-TGTGCTAATACCTGGCTAAATTAAAATGT  947

seq1  TGCAATCTTTGAACCTTTAGTGTAATTGCTAATGAGGTATGAATTGTATT  1000
      ||| ||||||||||||||||||||||||||||||| ||||||||   | |
seq2  TGC-ATCTTTGAACCTTTAGTGTAATTGCTAATGA-GTATGAAT--GAAT  993

seq1  ACCTGGTTTTGCTGG  1015
      |||||| ||||||||
seq2  ACCTGGATTTGCTGG  1008