BAC Information

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BAC

Clone NameB6Ng01-023I17
Chromosome9 (Build37)
Map Location 69,791,148 - 69,853,090
singlet/doubletdoublet
Overlap geneBnip2
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1
Downstream geneLOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023I17.bB6Ng01-023I17.g
ACCDH855434DH855435
length6851,045
definitionDH855434|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I17, 5' end.DH855435|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,791,148 - 69,791,831)(69,852,040 - 69,853,090)
sequence
gaattccatgaaaacagtacaaccgatatccttgcgtctcttcttgcatt
tgtgttcttgaagggcctttcagtgccagataagtaagctgattcagagg
atgaagacagtgtattggttacttttctgttgctgtgataaaaggccatg
accaagagcaacttgttgaaggagtagcttgttatggcttagagttccaa
agtaagagtccataatggcagagaggcgcagcagcagatgcctgggcagg
aagctgagagatcaaatctccatccacacacagaaactgggagagtaaat
tggaagtggagaggggcaaagaactctcaaagcctgtcccttgtgaccta
cttcctctccaaatggtgccactaactgagaaccaagtattcaaatacgt
gagcctctggggcacttttctaattcaacccactgtggactatgaggaaa
acaagcagacaactagagagcgatgggaaaggtgagattctctgtccatg
gtcagtgatggcctctctgagtgagtgaagagactgagaggagaacaacc
aggggaaggcgagcccaacctcagggttccttgcaattgcaacagcctgc
atgtaagattatgacacacagagggaaatgccaatcatagtgcattttct
caaacacacacacacacaggtatagcagtccagac
gaattctcaccaaaagaatcacactgttcaaaattaagactacaccagca
aagattctaactggccccacagatggttaaagtaacatatgtacgtctct
catcttagtctctaagatcatagtaagtgacatttgctaatgctgttgtt
acaatttaaaaataaaatgaaatctactaacagtgggtgtggtggaggag
aagcacaagctcacagttggatactgaagcagaagactgtgaaagagagg
ccagcctgagatacggagtaagaccagctccaaaactaaacaaaaactcc
cgaactaaactatgaataaatcaggaccaaggcttttctaaactactata
taaaatgataaactattttatgctctgcctttcatctttatgctaagaca
ttaacaaatgaaaggttgttacactcaaagcagaagtgttcaaaattaaa
tttcaagtagaaagcagagtgtttaactgttaaatggtacactgaattta
ggtattttatcacatgtagagtttgactggttagcaggctatttaagcat
atagagaaaatcaatgttggttagccaaagagtatatgcattgcaaatat
aatcatcgacctcaagggaataagctgttgcttgaaaatgtctgtttatc
tacttcaaaagcaaaatgctaaagttttcaaaggcctgggattttagcca
gggctcccagtcacttctctgggttcagcacacagagcaggagagctctg
atacgacacacacgttaagcatgctcatattgagcacgaggagcttgggg
tttgtcctgtcctcggctctgggcgacatttatattacaaatgctagtct
ctgtttgcaagctaacccactagcagcagggttagtctgtgcatgcaaat
ggactagtctagatgcaacccagtcaaagtgtgcatggacctttttgtct
cttttaaacttttcttcttcataccttggtagggaagagttatttcagta
aatgcatattttgaaattaaaaaaaaaagactgaacgtgtaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69791148_69791831
seq2: B6Ng01-023I17.b_35_719

seq1  GAATTCCATGAAAACAGTACAACCGATATCACTGCGTCTCTTCTTGCATT  50
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GAATTCCATGAAAACAGTACAACCGATATCCTTGCGTCTCTTCTTGCATT  50

seq1  TGTGTTCTTGAAGGGCCTTTCAGTGCCAGATAAGTAAGCTGATTCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTGAAGGGCCTTTCAGTGCCAGATAAGTAAGCTGATTCAGAGG  100

seq1  ATGAAGACAGTGTATTGGTTACTTTTCTGTTGCTGTGATAAAAGGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACAGTGTATTGGTTACTTTTCTGTTGCTGTGATAAAAGGCCATG  150

seq1  ACCAAGAGCAACTTGTTGAAGGAGTAGCTTGTTATGGCTTAGAGTTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGCAACTTGTTGAAGGAGTAGCTTGTTATGGCTTAGAGTTCCAA  200

seq1  AGTAAGAGTCCATAATGGCAGAGAGGCGCAGCAGCAGATGCCTGGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGTCCATAATGGCAGAGAGGCGCAGCAGCAGATGCCTGGGCAGG  250

seq1  AAGCTGAGAGATCAAATCTCCATCCACACACAGAAACTGGGAGAGTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGAGATCAAATCTCCATCCACACACAGAAACTGGGAGAGTAAAT  300

seq1  TGGAAGTGGAGAGGGGCAAAGAACTCTCAAAGCCTGTCCCTTGTGACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGGAGAGGGGCAAAGAACTCTCAAAGCCTGTCCCTTGTGACCTA  350

seq1  CTTCCTCTCCAAATGGTGCCACTAACTGAGAACCAAGTATTCAAATACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCCAAATGGTGCCACTAACTGAGAACCAAGTATTCAAATACGT  400

seq1  GAGCCTCTGGGGCACTTTTCTAATTCAACCCACTGTGGACTATGAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTGGGGCACTTTTCTAATTCAACCCACTGTGGACTATGAGGAAA  450

seq1  ACAAGCAGACAACTAGAGAGCGATGGGAAAGGTGAGATTCTCTGTCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGACAACTAGAGAGCGATGGGAAAGGTGAGATTCTCTGTCCATG  500

seq1  GTCAGTGATGGCCTCTCTGAGTGAGTGAAGAGACTGAGAGGAGAACAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGATGGCCTCTCTGAGTGAGTGAAGAGACTGAGAGGAGAACAACC  550

seq1  AGGGGAAGGCGAGCCCAACCTCAGGGTTCCTTGCAATTGCAACAGCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGGCGAGCCCAACCTCAGGGTTCCTTGCAATTGCAACAGCCTGC  600

seq1  ATGTAAGATTATGACACACAGAGGGAAATGCCAATCATAGTGCA-TTTCT  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGTAAGATTATGACACACAGAGGGAAATGCCAATCATAGTGCATTTTCT  650

seq1  CAAACACACACACACACAGGTATAGCAGTCCAGAC  684
      |||||||||||||||||||||||||||||||||||
seq2  CAAACACACACACACACAGGTATAGCAGTCCAGAC  685

seq1: chr9_69852040_69853090
seq2: B6Ng01-023I17.g_66_1110 (reverse)

seq1  CAGTTACACGTTCAGTCTTTTTTTTTTTTAATCTCAAAATGTGCATTTAC  50
      |||||||||||||||||  ||||||||||||| ||||||| |||||||||
seq2  CAGTTACACGTTCAGTC--TTTTTTTTTTAATTTCAAAATATGCATTTAC  48

seq1  TGAAATAACTCTTCCCTACCAAGGTATGAAGAAGAAAAGTTTAAAAAGAG  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAATAACTCTTCCCTACCAAGGTATGAAGAAGAAAAGTTT-AAAAGAG  97

seq1  ACAAAAAAGGTACATGCACACCTTGACTGGGTTGCATCTAGACTAGTCCA  150
      || |||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  AC-AAAAAGGTCCATGCACACTTTGACTGGGTTGCATCTAGACTAGTCCA  146

seq1  TTTGCATTGCACAGACTAACCCTGCTGCTAGTTGGTTAGCTTGCAAACAG  200
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTGCA-TGCACAGACTAACCCTGCTGCTAGTGGGTTAGCTTGCAAACAG  195

seq1  AGACTAGCATTTGTAAATATAAATGTCGCCCAGAGCCGAGGACAGGGCAA  250
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  AGACTAGCATTTGT-AATATAAATGTCGCCCAGAGCCGAGGACAGGACAA  244

seq1  ACCCCAAGCTCCTCGTGCTCAATATGAGCATGCTTAACGTGTGTGTCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGCTCCTCGTGCTCAATATGAGCATGCTTAACGTGTGTGTCGTA  294

seq1  TCAGAGCTCTCCTGCTCTGTGTGCTGAACCCAGAGAAGTGACTGGGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTCTCCTGCTCTGTGTGCTGAACCCAGAGAAGTGACTGGGAGCC  344

seq1  CTGGCTAAAATCCCAGGCCTTTGAAAACTTTAGCATTTTGCTTTTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAAAATCCCAGGCCTTTGAAAACTTTAGCATTTTGCTTTTGAAGT  394

seq1  AGATAAACAGACATTTTCAAGCAACAGCTTATTCCCTTGGGGTCGATGAT  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGATAAACAGACATTTTCAAGCAACAGCTTATTCCCTTGAGGTCGATGAT  444

seq1  TATATTTGCAATGCATATACTCTTTGGCTAACCAACATTGATTTTCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGCAATGCATATACTCTTTGGCTAACCAACATTGATTTTCTCTA  494

seq1  TATGCTTAAATAGCCTGCTAACCAGTCAAACTCTACATGTGATAAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTAAATAGCCTGCTAACCAGTCAAACTCTACATGTGATAAAATAC  544

seq1  CTAAATTCAGTGTACCATTTAACAGTTAAACACTCTGCTTTCTACTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCAGTGTACCATTTAACAGTTAAACACTCTGCTTTCTACTTGAA  594

seq1  ATTTAATTTTGAACACTTCTGCTTTGAGTGTAACAACCTTTCATTTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTGAACACTTCTGCTTTGAGTGTAACAACCTTTCATTTGTTA  644

seq1  ATGTCTTAGCATAAAGATGAAAGGCAGAGCATAAAATAGTTTATCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAGCATAAAGATGAAAGGCAGAGCATAAAATAGTTTATCATTTT  694

seq1  ATATAGTAGTTTAGAAAAGCCTTGGTCCTGATTTATTCATAGTTTAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTAGTTTAGAAAAGCCTTGGTCCTGATTTATTCATAGTTTAGTTC  744

seq1  GGGAGTTTTTGTTTAGTTTTGGAGCTGGTCTTACTCCGTATCTCAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTTTGTTTAGTTTTGGAGCTGGTCTTACTCCGTATCTCAGGCTG  794

seq1  GCCTCTCTTTCACAGTCTTCTGCTTCAGTATCCAACTGTGAGCTTGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTTCACAGTCTTCTGCTTCAGTATCCAACTGTGAGCTTGTGCT  844

seq1  TCTCCTCCACCACACCCACTGTTAGTAGATTTCATTTTATTTTTAAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCACCACACCCACTGTTAGTAGATTTCATTTTATTTTTAAATTG  894

seq1  TAACAACAGCATTAGCAAATGTCACTTACTATGATCTTAGAGACTAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAGCATTAGCAAATGTCACTTACTATGATCTTAGAGACTAAGAT  944

seq1  GAGAGACGTACATATGTTACTTTAACCATCTGTGGGGCCAGTTAGAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACGTACATATGTTACTTTAACCATCTGTGGGGCCAGTTAGAATCT  994

seq1  TTGCTGGTGTAGTCTTAATTTTGAACAGTGTGATTCTTTTGGTGAGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTGTAGTCTTAATTTTGAACAGTGTGATTCTTTTGGTGAGAATT  1044

seq1  C  1051
      |
seq2  C  1045