MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-024B08
Chromosome	9 (Build37)
Map Location	60,596,351 - 60,597,251
singlet/doublet	singlet
Overlap gene	LOC100040447
Upstream gene	Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6
Downstream gene	Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
Link	Open Mouse BAC browser

Click to get alignment info.

name	Senp8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71599 MGI:1918849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myo9a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270163 MGI:107735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 3 Proteins

name	EG665385 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665385 MGI:3647731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 127 ESTs, 8 Proteins pseudo : _no_value

name	LOC100040361 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040361
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Nr2e3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23958 MGI:1346317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665389 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665389 MGI:3647735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Thsd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207596 MGI:2672033
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100039792 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	EG384942 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384942 MGI:3648610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Lrrc49 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102747 MGI:2442689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Larp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67557 MGI:1914807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040447 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Uaca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72565 MGI:1919815
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	ENSMUSG00000052143 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:791387 MGI:3642719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	A430102L10 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:330956
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100040481 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Tle3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21887 MGI:104634
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039851 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039851
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 15 Proteins

name	Senp8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402515 GeneID:71599 MGI:1918849
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SUMO/sentrin specific peptidase 8 transcript_id : NM_027838.2

name	Myo9a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386154 GeneID:270163 MGI:107735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 3 Proteins product : myosin IXa, transcript variant 2 transcript_id : XM_981204.1

name	Nr2e3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892966 GeneID:23958 MGI:1346317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 2, group E, member 3 transcript_id : NM_013708.4

name	EG665389 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386158 GeneID:665389 MGI:3647735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG665389 transcript_id : XM_976601.1

name	Thsd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351523 GeneID:207596 MGI:2672033
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thrombospondin, type I, domain containing 4 transcript_id : NM_001040426.2

name	Thsd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361124 GeneID:207596 MGI:2672033
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thrombospondin, type I, domain containing 4 transcript_id : NM_172444.2

name	LOC100039792 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259994 GeneID:100039792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100039792 transcript_id : XM_001473511.1

name	EG384942 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386160 GeneID:384942 MGI:3648610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG384942 transcript_id : XM_357952.4

name	Lrrc49 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370683 GeneID:102747 MGI:2442689
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 49 transcript_id : NM_145616.3

name	Larp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372822 GeneID:67557 MGI:1914807
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : La ribonucleoprotein domain family, member 6 transcript_id : NM_026235.3

name	LOC100040447 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260010 GeneID:100040447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100040447 transcript_id : XM_001475271.1

name	Uaca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130474 GeneID:72565 MGI:1919815
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uveal autoantigen with coiled-coil domains and ankyrin repeats transcript_id : NM_028283.2

name	ENSMUSG00000052143 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260012 GeneID:791387 MGI:3642719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : predicted gene, ENSMUSG00000052143 transcript_id : XM_001475287.1

name	A430102L10 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259996 GeneID:330956
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein A430102L10 transcript_id : XM_001473612.1

name	LOC100040481 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260014 GeneID:100040481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical protein LOC100040481 transcript_id : XM_001475306.1

name	Tle3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678360 GeneID:21887 MGI:104634
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transducin-like enhancer of split 3, homolog of Drosophila E(spl) transcript_id : NM_009389.1

name	LOC100039851 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259998 GeneID:100039851
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 15 Proteins product : similar to Hmgb1 protein transcript_id : XM_001473665.1

name	Myo9a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386155 GeneID:270163 MGI:107735
definition	codon_start : 1 product : myosin IXa isoform 2 protein_id : XP_986298.1

name	Nr2e3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305323 CCDS:CCDS23255.1 GeneID:23958 MGI:1346317
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0045872 - positive regulation of rhodopsin gene activity [Evidence IGI]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0002073 - retina development (sensu Mammalia) [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : retinal degeneration 7 product : photoreceptor-specific nuclear receptor protein_id : NP_038736.1

name	EG665389 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386159 GeneID:665389 MGI:3647735
definition	codon_start : 1 product : hypothetical protein protein_id : XP_981695.1

name	Thsd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94536769 GeneID:207596 MGI:2672033
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1 product : thrombospondin, type I, domain containing 4 isoform a protein_id : NP_001035516.1

name	Thsd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369599 CCDS:CCDS23256.1 GeneID:207596 MGI:2672033
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : thrombospondin, type I, domain containing 4 isoform b protein_id : NP_766032.1

name	LOC100039792 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259995 GeneID:100039792
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473561.1

name	EG384942 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386161 GeneID:384942 MGI:3648610
definition	codon_start : 1 product : hypothetical protein protein_id : XP_357952.4

name	Lrrc49 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981832 CCDS:CCDS23257.1 GeneID:102747 MGI:2442689
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : leucine rich repeat containing 49 protein_id : NP_663591.2

name	Larp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981025 CCDS:CCDS23258.1 GeneID:67557 MGI:1914807
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006405 - RNA export from nucleus [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 product : acheron protein_id : NP_080511.2

name	LOC100040447 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260011 GeneID:100040447
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475321.1

name	Uaca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28077007 CCDS:CCDS23259.1 GeneID:72565 MGI:1919815
definition	GO_component : GO:0043293 - apoptosome [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005829 - cytosol [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0048471 - perinuclear region [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008630 - DNA damage response, signal transduction resulting in induction of apoptosis [Evidence IMP]; GO:0008631 - induction of apoptosis by oxidative stress [Evidence IMP]; GO:0050728 - negative regulation of inflammatory response [Evidence IMP]; GO:0042347 - negative regulation of NF-kappaB import into nucleus [Evidence IMP]; GO:0043065 - positive regulation of apoptosis [Evidence IMP] [Evidence IDA]; GO:0043280 - positive regulation of caspase activity [Evidence IMP] [Evidence IDA]; GO:0042307 - positive regulation of protein import into nucleus [Evidence IMP]; GO:0009411 - response to UV [Evidence IMP] codon_start : 1 product : nuclear membrane binding protein NUCLING protein_id : NP_082559.1

name	ENSMUSG00000052143 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260013 GeneID:791387 MGI:3642719
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475337.1

name	A430102L10 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259997 GeneID:330956
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473662.1

name	LOC100040481 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260015 GeneID:100040481
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475356.1

name	Tle3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678361 GeneID:21887 MGI:104634
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007222 - frizzled signaling pathway [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : transducin-like enhancer of split 3 product : transducin-like enhancer protein 3 protein_id : NP_033415.1

name	LOC100039851 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259999 GeneID:100039851
definition	codon_start : 1 product : similar to Hmgb1 protein protein_id : XP_001473715.1

name	LOC100040361 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040361
definition	number : 1 pseudo : _no_value

name	EG665385 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149259992 GeneID:665385 MGI:3647731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 127 ESTs, 8 Proteins product : predicted gene, EG665385 pseudo : _no_value transcript_id : XR_001723.2

clone name	MSMg01-514J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528M07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-487I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250C03
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name		B6Ng01-024B08.g
ACC		DH855822
length		995
definition		DH855822\|Mus musculus domesticus DNA, BAC clone: B6Ng01-024B08, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence		gaattcacacttataccagcttttgttgtgcaaaccttgttccttaattt aaaaccgttggttgaataaagatgtctacaacctgtagctgggcagaaga caggtaggtggggctttggctcctgagctgggggtctgaggcagacagca gaaggagagcgggaagaagaaaggaggaaggcaccaccatagggcaggta gatcgtgagaacatagccatgaggaccgaccagttaaagtaggagttgcc cagacaaagcatggcaagttatatttcagggttattgacaggggagtaga caaaatagcatagagtgttaatatctgcccagctctagtgctccccgccc ccacaccccagacagggtttctctgtgtagccctggctgtcctggagctc actctgtagaccaggctggcctcaaacttagaaatccacctgcctctgcc tcccaagtgctgtgccaccactgcctggcccagttctagtgctttaaggc tgattataagtataaaggttttgtgtcttttagttgggaactaaaatgat ctagggtgaagttgaaacccacaagtagtatttactgcaacaggtggtta tcagagctagtccttaaaatggccatcagatccagttgggattggcagtt cgactacattggcttgcctggagccagaaacaaggggacagtgggtaatg ttaacttgtctttcattgttgcagcagaaggttatttcagtcagctcaga ggtcatgagagtttgctgttcttcccgagaacacagttcagttctcagca cccatgttgggtggctcataagctgtctgtattctccagctcccagggag tcagtgccctcttctggcccctgcaggtactgcactcatatgtacataca cagagacatacacatgcacataatttaatataagaacagtaccgggtaag aataatgtaatctaccttgggtagttttgggggggcctttatttt
quality values		Open. Hide. 50 47 47 47 55 13 14 20 10 18 17 25 12 18 12 13 40 40 43 59 61 59 59 61 61 59 61 59 59 59 59 49 52 59 59 59 59 59 61 61 61 61 61 61 61 61 61 61 59 43 39 33 26 28 37 35 28 36 61 61 61 61 61 61 61 61 61 59 59 59 59 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 59 61 61 59 61 61 59 59 61 59 59 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 59 59 61 61 59 59 59 59 52 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 59 61 52 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 61 61 59 61 59 59 61 61 61 61 59 61 59 59 59 61 61 59 59 59 61 61 59 61 61 61 59 61 59 52 61 61 59 61 61 61 59 61 61 61 61 59 61 61 61 61 59 59 59 59 59 59 59 61 59 52 61 61 59 61 61 61 61 61 61 59 52 61 59 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 59 59 55 59 59 61 59 61 61 59 61 61 59 61 59 52 59 59 61 61 52 61 61 61 61 59 59 59 61 61 59 61 61 61 61 61 61 61 59 59 61 61 61 61 59 59 61 61 61 61 61 61 61 61 59 61 59 61 61 61 59 61 59 61 61 61 55 52 36 55 55 52 55 61 61 61 61 61 55 55 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 55 61 49 55 55 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 55 55 55 61 55 61 61 61 55 55 55 50 55 55 61 61 61 61 61 50 61 61 61 61 61 61 61 52 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 50 61 61 61 43 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 61 61 61 61 61 61 61 53 53 47 61 61 61 61 61 61 47 61 61 61 53 61 61 61 61 61 61 47 47 53 53 57 57 53 47 57 57 53 52 45 53 47 53 53 53 57 52 53 53 53 53 57 47 53 53 45 57 57 50 53 57 39 46 53 50 57 45 50 53 53 38 57 42 53 53 43 53 53 53 53 52 53 53 53 53 52 53 57 47 32 53 42 53 53 53 35 45 40 53 57 33 50 53 53 53 53 53 38 24 42 47 37 37 52 40 36 57 57 45 53 36 53 42 45 30 52 50 52 37 42 50 50 53 50 50 45 57 57 50 45 53 53 41 50 53 53 51 37 34 45 37 57 41 41 32 27 33 50 23 37 57 47 33 35 52 38 52 29 42 42 40 45 50 50 57 32 53 50 57 52 42 29 32 40 41 8 52 23 33 29 36 50 50 16 52 38 24 46 26 31 33 32 53 57 38 18 24 39 40 27 36 40 41 42 37 14 57 33 53 24 41 32 33 47 52 21 52 29 37 57 44 37 30 32 42 29 48 44 38 37 36 45 41 33 37 8 46 24 32 27 29 28 32 27 31 30 36 26 41 46 36 37 33 33 11 35 34 33 57 47 37 33 53 29 26 53 44 37 30 37 40 29 41 31 31 24 10 21 18 27 30 31 29 32 29 32 28 15 13 46 46 30 47 30 24 23 41 29 24 46 33 30 29 39 25 37 16 13 30 27 25 25 31 23 48 32 32 32 14 19 12 21 25 17 16 36 46 27 25 36 28 29 33 29 24 26 29 28 39 20 28 31 34 33 18 29 21 19 20 12 9 32 15 33 15 29 7 21 12 22 29 24 20 23 12 31 20 36 17 29 14 23 29 20 9 29 20 34 29 26 22 41 29 26 29 23 23 28 19 41 12 32 23 34 20 22 10 13 21 31 21 46 16 41 17 26 15 35 13 7 16 11 11 13 20 13 7 7 29 13 13 27 39 25 31 21 36 20 10 29 16 36 38 46 36 23 46 41 41 36 36 7 5 11 35 51 28 16 20 7 10 5

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_60596351_60597251
seq2: B6Ng01-024B08.g_161_1062

seq1  CAGAAGACAGGTAGGTGGGGCTTTGGCTCCTGAGCTGGGGGTCTGAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAGGTAGGTGGGGCTTTGGCTCCTGAGCTGGGGGTCTGAGGCA  50

seq1  GACAGCAGAAGGAGAGCGGGAAGAAGAAAGGAGGAAGGCACCACCATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGAAGGAGAGCGGGAAGAAGAAAGGAGGAAGGCACCACCATAGG  100

seq1  GCAGGTAGATCGTGAGAACATAGCCATGAGGACCGACCAGTTAAAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAGATCGTGAGAACATAGCCATGAGGACCGACCAGTTAAAGTAGG  150

seq1  AGTTGCCCAGACAAAGCATGGCAAGTTATATTTCAGGGTTATTGACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCCAGACAAAGCATGGCAAGTTATATTTCAGGGTTATTGACAGGG  200

seq1  GAGTAGACAAAATAGCATAGAGTGTTAATATCTGCCCAGCTCTAGTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGACAAAATAGCATAGAGTGTTAATATCTGCCCAGCTCTAGTGCTC  250

seq1  CCCGCCCCCACACCCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCCCACACCCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  300

seq1  GGAGCTCACTCTGTAGACCAGGCTGGCCTCAAACTTAGAAATCCACCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCACTCTGTAGACCAGGCTGGCCTCAAACTTAGAAATCCACCTGC  350

seq1  CTCTGCCTCCCAAGTGCTGTGCCACCACTGCCTGGCCCAGTTCTAGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGCTGTGCCACCACTGCCTGGCCCAGTTCTAGTGCT  400

seq1  TTAAGGCTGATTATAAGTATAAAGGTTTTGTGTCTTTTAGTTGGGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTGATTATAAGTATAAAGGTTTTGTGTCTTTTAGTTGGGAACTA  450

seq1  AAATGATCTAGGGTGAAGTTGAAACCCACAAGTAGTATTTACTGCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCTAGGGTGAAGTTGAAACCCACAAGTAGTATTTACTGCAACAG  500

seq1  GTGGTTATCAGAGCTAGTCCTTAAAATGGCCATCAGATCCAGTTGGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATCAGAGCTAGTCCTTAAAATGGCCATCAGATCCAGTTGGGATT  550

seq1  GGCAGTTCGACTACATTGGCTTGCCTGGAGCCAGAAACAAGGGGACAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTCGACTACATTGGCTTGCCTGGAGCCAGAAACAAGGGGACAGTG  600

seq1  GGTAATGTTAACTTGTCTTTCATTGTTGCAGCAGAAGGTTATTTCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGTTAACTTGTCTTTCATTGTTGCAGCAGAAGGTTATTTCAGTCA  650

seq1  GCTCAGAGGTCATGAGAGTTTGCTGTTCTTCCCGAGAACACAGTTCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGGTCATGAGAGTTTGCTGTTCTTCCCGAGAACACAGTTCAGTT  700

seq1  CTCAGCACCCATGTTGGGTGGCTCAT-AGCTGTCTGTATTCTCCAGCTCC  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCAGCACCCATGTTGGGTGGCTCATAAGCTGTCTGTATTCTCCAGCTCC  750

seq1  CAGGGAGTCAGTGCCCTCTTCTGGCCCCTGCAGGTACTGCACTCATATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTCAGTGCCCTCTTCTGGCCCCTGCAGGTACTGCACTCATATGT  800

seq1  ACATACACAGAGACATACACATGCACATAATTTAATATAAGAACAGTACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACAGAGACATACACATGCACATAATTTAATATAAGAACAGTACC  850

seq1  GGTTAAGATAAATGTTATCTACCTT-GGTAGTTTTTGGGGGGGCTTTTAT  898
      || |||||  ||||| ||||||||| ||||| |||||||||||| |||||
seq2  GGGTAAGAATAATGTAATCTACCTTGGGTAG-TTTTGGGGGGGCCTTTAT  899

seq1  TTT  901
      |||
seq2  TTT  902

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information