BAC Information

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BAC

Clone NameB6Ng01-024I10
Chromosome9 (Build37)
Map Location 44,494,852 - 44,592,524
singlet/doubletdoublet
Overlap genePhldb1, Arcn1, 1500035H01Rik
Upstream genePvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh
Downstream geneTmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024I10.bB6Ng01-024I10.g
ACCDH856132DH856133
length2791,097
definitionDH856132|Mus musculus domesticus DNA, BAC clone: B6Ng01-024I10, 5' end.DH856133|Mus musculus domesticus DNA, BAC clone: B6Ng01-024I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,494,852 - 44,495,130)(44,591,418 - 44,592,524)
sequence
gaattccatctcctcccaccatgtgacatgcccccaggcctgggttggag
agatgatggcacgtaccctcatgtggcccacagccagaagcagtgggcaa
agccacagagtggccatggcaattagtgtgtaaccatggtgatgaagcgg
tcaccatggagacaaggatgacgggcttgtaacaggatgatggggctgga
cctcgaaagtgacacttgaggtctctggtccttgagctgagtagtgacaa
gtgggaggtgggaggaggaggaagaggaa
gaattctctgttaaccacagcgaaagcacggtagggtccgactgctttgt
cgatggttcatctaacaccaagaggccaaggtggtcaggctttccatcgg
gacgtggcacctggttcagagaaaggctaagatcactggactaagcccta
ctgagaatgaactcacatgatatatgaagcacagacatgggactaacttc
acggttaggtaggagacaagcacagaatactgtatcacataacacactga
gtggaatctggaggaactccaatgcaatgagcactattaaggcagtgaat
gctcattagagaaactagaggaacgattagaatagaggaactggaaccaa
ccccaggggacacattttttaggatgcaccatctgtacctttaaaaatgc
atcgatatccccaacagctgggataaaatcaggaatgaaaggtttcagtt
tgtggtccagatcgatcaactgaggtgtgtacctgccaggggcagttgag
ggaaaatggaagcagtcagaaaatgtcatttgactgggctaaaaagcccc
aaaggagcttggtgctgcttcagactcgagagtgtaaaggcccgggcacg
gcaggcgaggtgtggacagacggctctcatgcttaccggctgatgtactc
aaagagctccttgatctcggccgagactggcagatgctcgtagtcggcag
gatcatacgccctggggaagaagacgtgcaggtcagggtggccctcggga
gcacaggcagcaggcctgtagtccatgtgtgatctgactaatagggacgt
gacctccagcctgccttctgtccctgccacatactaccttcctggtagcc
tacaaggcagctttgacaatgattatagttagctgtcaattacctcttac
taaaggagaagctgcaggaaacccatgcgcttttaaaaaaacatgtatgg
ctgtttgcctacaagtgtgactctgcatacatttgtaccttgtacccaag
gagccagagagtatggtcagttccctgggattagatagacaattttgagg
ggtcaatatggtgctggattgaaccaggtctttggtaagagcagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44494852_44495130
seq2: B6Ng01-024I10.b_29_307

seq1  GAATTCCATCTCCTCCCACCATGTGACATGCCCCCAGGCCTGGGTTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCCTCCCACCATGTGACATGCCCCCAGGCCTGGGTTGGAG  50

seq1  AGATGATGGCACGTACCCTCATGTGGCCCACAGCCAGAAGCAGTGGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGGCACGTACCCTCATGTGGCCCACAGCCAGAAGCAGTGGGCAA  100

seq1  AGCCACAGAGTGGCCATGGCAATTAGTGTGTAACCATGGTGATGAAGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGAGTGGCCATGGCAATTAGTGTGTAACCATGGTGATGAAGCGG  150

seq1  TCACCATGGAGACAAGGATGACGGGCTTGTAACAGGATGATGGGGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGGAGACAAGGATGACGGGCTTGTAACAGGATGATGGGGCTGGA  200

seq1  CCTCGAAAGTGACACTTGAGGTCTCTGGTCCTTGAGCTGAGTAGTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAAAGTGACACTTGAGGTCTCTGGTCCTTGAGCTGAGTAGTGACAA  250

seq1  GTGGGAGGTGGGAGGAGGAGGAAGAGGAA  279
      |||||||||||||||||||||||||||||
seq2  GTGGGAGGTGGGAGGAGGAGGAAGAGGAA  279

seq1: chr9_44591418_44592524
seq2: B6Ng01-024I10.g_67_1163 (reverse)

seq1  TGGCTGCTCTTACAGAAGACCTGGGTTCAATTCCCAGCACCCATA-TGAC  49
      |||||||||||||  ||||||| ||||||||  |||||| ||||| ||||
seq2  TGGCTGCTCTTACCAAAGACCT-GGTTCAAT--CCAGCA-CCATATTGAC  46

seq1  CACTCAAAATTGTCTATCTAATCCCAGGGGACCTGA-CATACTCTTCTGG  98
      | |||||||||||||||||||||||| |||| |||| ||||||| |||||
seq2  CCCTCAAAATTGTCTATCTAATCCCA-GGGAACTGACCATACTC-TCTGG  94

seq1  CTTCCTTGGGTACAAGGTACAAATGTAATGCAGAGTCACACTTGTAGGCA  148
      | |||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  C-TCCTTGGGTACAAGGTACAAATGT-ATGCAGAGTCACACTTGTAGGC-  141

seq1  AAACAGCCATACATGTTTTTTTTAAAAGCGCATGGGTTTCCTGCAGCTTT  198
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AAACAGCCATACATG-TTTTTTTAAAAGCGCATGGGTTTCCTGCAGC-TT  189

seq1  CTCCTTTAGTTAAGAGGTAATTGACAGCTAACTATAATCATTGTCAAAGC  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAG-TAAGAGGTAATTGACAGCTAACTATAATCATTGTCAAAGC  238

seq1  TGCCTTGTAGGCTACCAGGAAGGTAGTATGTGGCAGGGACAGAAGGCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTAGGCTACCAGGAAGGTAGTATGTGGCAGGGACAGAAGGCAGG  288

seq1  CTGGAGGTCACGTCCCTATTAGTCAGATCACACATGGACTACAGGCCTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTCACGTCCCTATTAGTCAGATCACACATGGACTACAGGCCTGC  338

seq1  TGCCTGTGCTCCCGAGGGCCACCCTGACCTGCACGTCTTCTTCCCCAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGCTCCCGAGGGCCACCCTGACCTGCACGTCTTCTTCCCCAGGG  388

seq1  CGTATGATCCTGCCGACTACGAGCATCTGCCAGTCTCGGCCGAGATCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGATCCTGCCGACTACGAGCATCTGCCAGTCTCGGCCGAGATCAAG  438

seq1  GAGCTCTTTGAGTACATCAGCCGGTAAGCATGAGAGCCGTCTGTCCACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTTGAGTACATCAGCCGGTAAGCATGAGAGCCGTCTGTCCACAC  488

seq1  CTCGCCTGCCGTGCCCGGGCCTTTACACTCTCGAGTCTGAAGCAGCACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCTGCCGTGCCCGGGCCTTTACACTCTCGAGTCTGAAGCAGCACCA  538

seq1  AGCTCCTTTGGGGCTTTTTAGCCCAGTCAAATGACATTTTCTGACTGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTTGGGGCTTTTTAGCCCAGTCAAATGACATTTTCTGACTGCTT  588

seq1  CCATTTTCCCTCAACTGCCCCTGGCAGGTACACACCTCAGTTGATCGATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCCCTCAACTGCCCCTGGCAGGTACACACCTCAGTTGATCGATC  638

seq1  TGGACCACAAACTGAAACCTTTCATTCCTGATTTTATCCCAGCTGTTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACAAACTGAAACCTTTCATTCCTGATTTTATCCCAGCTGTTGGG  688

seq1  GATATCGATGCATTTTTAAAGGTACAGATGGTGCATCCTAAAAAATGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCGATGCATTTTTAAAGGTACAGATGGTGCATCCTAAAAAATGTGT  738

seq1  CCCCTGGGGTTGGTTCCAGTTCCTCTATTCTAATCGTTCCTCTAGTTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGGTTGGTTCCAGTTCCTCTATTCTAATCGTTCCTCTAGTTTCT  788

seq1  CTAATGAGCATTCACTGCCTTAATAGTGCTCATTGCATTGGAGTTCCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGCATTCACTGCCTTAATAGTGCTCATTGCATTGGAGTTCCTCC  838

seq1  AGATTCCACTCAGTGTGTTATGTGATACAGTATTCTGTGCTTGTCTCCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCACTCAGTGTGTTATGTGATACAGTATTCTGTGCTTGTCTCCTA  888

seq1  CCTAACCGTGAAGTTAGTCCCATGTCTGTGCTTCATATATCATGTGAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCGTGAAGTTAGTCCCATGTCTGTGCTTCATATATCATGTGAGTT  938

seq1  CATTCTCAGTAGGGCTTAGTCCAGTGATCTTAGCCTTTCTCTGAACCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAGTAGGGCTTAGTCCAGTGATCTTAGCCTTTCTCTGAACCAGG  988

seq1  TGCCACGTCCCGATGGAAAGCCTGACCACCTTGGCCTCTTGGTGTTAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGTCCCGATGGAAAGCCTGACCACCTTGGCCTCTTGGTGTTAGAT  1038

seq1  GAACCATCGACAAAGCAGTCGGACCCTACCGTGCTTTCGCTGTGGTTAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCGACAAAGCAGTCGGACCCTACCGTGCTTTCGCTGTGGTTAAC  1088

seq1  AGAGAATTC  1107
      |||||||||
seq2  AGAGAATTC  1097