BAC Information

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BAC

Clone NameB6Ng01-024I21
Chromosome9 (Build37)
Map Location 70,403,034 - 70,531,461
singlet/doubletdoublet
Overlap geneSltm, B230380D07Rik, Adam10
Upstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111
Downstream geneCycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024I21.bB6Ng01-024I21.g
ACCDH856152DH856153
length1,067657
definitionDH856152|Mus musculus domesticus DNA, BAC clone: B6Ng01-024I21, 5' end.DH856153|Mus musculus domesticus DNA, BAC clone: B6Ng01-024I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,530,383 - 70,531,461)(70,403,034 - 70,403,690)
sequence
gaattcaggtttgattcccagcatcaatatgataattcacaactgtctat
aatcccagttctaaaggaatctaccaagcacacatgtggtacatagacat
acatgcaagcaaacacccatacacataaatctttttttttttaaagagag
aaagagaaagattctttcaattaaaaaaaaaaaagcagaaagttgctgag
ttgtttgtttgtattctttgagacaaggccttattatgtagctctggctg
tcctggaactcattatgtagaccaggctggcctcagactcaaagatctac
ctgtctctgcctcctgagttctgggattaaagtctgcctcctgagttctg
ggattaaagacataagccaccatccagaagaaagaaagtttttatataat
ctgacatggtagagttcacctgtaataccaacactaggtaaactgaggca
gaagactataaacgtaagtgtgggccatacactgagaccctgtttccaga
aagaaagaagaaaagaaaaacaaaacttaaaaacaggtatggaggtatat
ggagaaaagagggttaaaaatgttaacctttgagatttctcttgtttgaa
ataagtcaggcctattggtacagacctgtaatcccagctactcagaagga
taccaagctcctggccagcctagtatttagtgaggagtccctgtctaaaa
caaaactgtttggggacaggggagactagaatgtagttcagtaatagagt
acttgcccagaatttgggagacctcagatctaatccccaccacctaaaat
taaaaaaaaaaaaacaaaaaaaaaacactgccttatgtttggatatttca
ccacttagcagatattagaaaaattatccctttaaacttacatttaattt
ttatacatgtttaaggagaaactcctaaacactatagatcatgatgagca
tcagagaaaagtcctttgcactcctctatcaacccttaagttaaagtcct
taggaaaagaagacccattaatatacactatgcgaagtctgaacaagaat
gctgcatgcccagtccc
gaattcctttctgggagcccaaagggaaaaaagaaaattggttttgtcaa
aggaaggctagttggtatcatttgccatccagtcttatgtgctgaaaaag
ttcatggcttagctgaagttctgcctgtaacagtctgaaaggttgcgtgg
gcaaactagctgttctggaagcgccctggaagcaagtctctagcctttat
tgaccagttaaaatggggagaaggttcacatgagatcatctgagtacatg
aagggctgctcattagaggcagcccttcttgaggaagcaaaattgacatc
agaatacaaacagcatcaggacaactaacaacaactggtagtttttgttg
aagtgtaatttgagcttcctctaagtgaactaaagtaagtgggcttcccc
ttggagtgtgcctggtgtgtgcttgttaccaggctgaggctattgtctgt
aaactgtggatcagccactccctagaacagtgccttgttagtgggccaga
agagcctcacactgaaatggagagtttagcaaatgatattgttgatttgg
aacatgctacttggcctctaagctccttttgtcttttgtaaaacagtgga
gcctgccgtatgtacccaagcatgcctggtaaaaagtatttttaagccag
gcagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70530383_70531461
seq2: B6Ng01-024I21.b_46_1112 (reverse)

seq1  GGGACTGGGCATGGCAGGCACTCCTTTGTTCCAGACCTTCGCATAGTGTA  50
      |||||||||||| ||| ||| ||  ||||| |||| ||||||||||||||
seq2  GGGACTGGGCAT-GCA-GCATTC--TTGTT-CAGA-CTTCGCATAGTGTA  44

seq1  TATTATTGGGTCTCTTTTTCCTAAGGACTTTAACCTAAAGGGTTGGATAG  100
      ||||| |||||||  |||||||||||||||||| || ||||||| |||||
seq2  TATTAATGGGTCTTCTTTTCCTAAGGACTTTAA-CTTAAGGGTT-GATAG  92

seq1  AGGAGTGCAAAGGACTTTTCTCTGATGCTCATCATTGATCTAATAGTGTT  150
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  AGGAGTGCAAAGGACTTTTCTCTGATGCTCATCA-TGATCT-ATAGTGTT  140

seq1  TAGGAGTTTCTCCTTTAAACATGTATAAAAATTAAATGTAAGTTTAAAGG  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTTCTCC-TTAAACATGTATAAAAATTAAATGTAAGTTTAAAGG  189

seq1  GATAATTTTTCTAATATCTGCTAAGTGGTGAAATATCCAAACATAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTTTCTAATATCTGCTAAGTGGTGAAATATCCAAACATAAGGCA  239

seq1  GTGTTTTTTTTTTGTTTTTTTTTTTTTTAATTTTAGGTGGTGGGGATTAG  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTTTTTTG-TTTTTTTTTTTTTAATTTTAGGTGGTGGGGATTAG  288

seq1  ATCTGAGGTCTCCCAAATTCTGGGCAAGTACTCTATTACTGAACTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGTCTCCCAAATTCTGGGCAAGTACTCTATTACTGAACTACATT  338

seq1  CTAGTCTCCCCTGTCCCCAAACAGTTTTGTTTTAGACAGGGACTCCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCCCCTGTCCCCAAACAGTTTTGTTTTAGACAGGGACTCCTCAC  388

seq1  TAAATACTAGGCTGGCCAGGAGCTTGGTATCCTTCTGAGTAGCTGGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTAGGCTGGCCAGGAGCTTGGTATCCTTCTGAGTAGCTGGGATT  438

seq1  ACAGGTCTGTACCAATAGGCCTGACTTATTTCAAACAAGAGAAATCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTGTACCAATAGGCCTGACTTATTTCAAACAAGAGAAATCTCAA  488

seq1  AGGTTAACATTTTTAACCCTCTTTTCTCCATATACCTCCATACCTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAACATTTTTAACCCTCTTTTCTCCATATACCTCCATACCTGTTTT  538

seq1  TAAGTTTTGTTTTTCTTTTCTTCTTTCTTTCTGGAAACAGGGTCTCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTGTTTTTCTTTTCTTCTTTCTTTCTGGAAACAGGGTCTCAGTG  588

seq1  TATGGCCCACACTTACGTTTATAGTCTTCTGCCTCAGTTTACCTAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCCACACTTACGTTTATAGTCTTCTGCCTCAGTTTACCTAGTGTT  638

seq1  GGTATTACAGGTGAACTCTACCATGTCAGATTATATAAAAACTTTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTACAGGTGAACTCTACCATGTCAGATTATATAAAAACTTTCTTTC  688

seq1  TTCTGGATGGTGGCTTATGTCTTTAATCCCAGAACTCAGGAGGCAGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATGGTGGCTTATGTCTTTAATCCCAGAACTCAGGAGGCAGACTT  738

seq1  TAATCCCAGAACTCAGGAGGCAGAGACAGGTAGATCTTTGAGTCTGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGAACTCAGGAGGCAGAGACAGGTAGATCTTTGAGTCTGAGGC  788

seq1  CAGCCTGGTCTACATAATGAGTTCCAGGACAGCCAGAGCTACATAATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACATAATGAGTTCCAGGACAGCCAGAGCTACATAATAAG  838

seq1  GCCTTGTCTCAAAGAATACAAACAAACAACTCAGCAACTTTCTGCTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCTCAAAGAATACAAACAAACAACTCAGCAACTTTCTGCTTTTT  888

seq1  TTTTTTTAATTGAAAGAATCTTTCTCTTTCTCTCTTTAAAAAAAAAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATTGAAAGAATCTTTCTCTTTCTCTCTTTAAAAAAAAAAAGA  938

seq1  TTTATGTGTATGGGTGTTTGCTTGCATGTATGTCTATGTACCACATGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTATGGGTGTTTGCTTGCATGTATGTCTATGTACCACATGTGT  988

seq1  GCTTGGTAGATTCCTTTAGAACTGGGATTATAGACAGTTGTGAATTATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTAGATTCCTTTAGAACTGGGATTATAGACAGTTGTGAATTATCA  1038

seq1  TATTGATGCTGGGAATCAAACCTGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  TATTGATGCTGGGAATCAAACCTGAATTC  1067

seq1: chr9_70403034_70403690
seq2: B6Ng01-024I21.g_68_724

seq1  GAATTCCTTTCTGGGAGCCCAAAGGGAAAAAAGAAAATTGGTTTTGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTGGGAGCCCAAAGGGAAAAAAGAAAATTGGTTTTGTCAA  50

seq1  AGGAAGGCTAGTTGGTATCATTTGCCATCCAGTCTTATGTGCTGAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCTAGTTGGTATCATTTGCCATCCAGTCTTATGTGCTGAAAAAG  100

seq1  TTCATGGCTTAGCTGAAGTTCTGCCTGTAACAGTCTGAAAGGTTGCGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCTTAGCTGAAGTTCTGCCTGTAACAGTCTGAAAGGTTGCGTGG  150

seq1  GCAAACTAGCTGTTCTGGAAGCGCCCTGGAAGCAAGTCTCTAGCCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTAGCTGTTCTGGAAGCGCCCTGGAAGCAAGTCTCTAGCCTTTAT  200

seq1  TGACCAGTTAAAATGGGGAGAAGGTTCACATGAGATCATCTGAGTACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTTAAAATGGGGAGAAGGTTCACATGAGATCATCTGAGTACATG  250

seq1  AAGGGCTGCTCATTAGAGGCAGCCCTTCTTGAGGAAGCAAAATTGACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGCTCATTAGAGGCAGCCCTTCTTGAGGAAGCAAAATTGACATC  300

seq1  AGAATACAAACAGCATCAGGACAACTAACAACAACTGGTAGTTTTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAAACAGCATCAGGACAACTAACAACAACTGGTAGTTTTTGTTG  350

seq1  AAGTGTAATTTGAGCTTCCTCTAAGTGAACTAAAGTAAGTGGGCTTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAATTTGAGCTTCCTCTAAGTGAACTAAAGTAAGTGGGCTTCCCC  400

seq1  TTGGAGTGTGCCTGGTGTGTGCTTGTTACCAGGCTGAGGCTATTGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGTGCCTGGTGTGTGCTTGTTACCAGGCTGAGGCTATTGTCTGT  450

seq1  AAACTGTGGATCAGCCACTCCCTAGAACAGTGCCTTGTTAGTGGGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGGATCAGCCACTCCCTAGAACAGTGCCTTGTTAGTGGGCCAGA  500

seq1  AGAGCCTCACACTGAAATGGAGAGTTTAGCAAATGATATTGTTGATTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCACACTGAAATGGAGAGTTTAGCAAATGATATTGTTGATTTGG  550

seq1  AACATGCTACTTGGCCTCTAAGCTCCTTTTGTCTTTTGTAAAACAGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTACTTGGCCTCTAAGCTCCTTTTGTCTTTTGTAAAACAGTGGA  600

seq1  GCCTGCCGTATGTACCCAAGCATGCCTGGTAAAAAGTATTTTTAAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCGTATGTACCCAAGCATGCCTGGTAAAAAGTATTTTTAAGCCAG  650

seq1  GCAGTGG  657
      |||||||
seq2  GCAGTGG  657