BAC Information

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BAC

Clone NameB6Ng01-025C16
Chromosome9 (Build37)
Map Location 31,877,452 - 32,005,858
singlet/doubletdoublet
Overlap geneLOC666622
Upstream geneZbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619
Downstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025C16.bB6Ng01-025C16.g
ACCDH856595DH856596
length969673
definitionDH856595|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C16, 5' end.DH856596|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,004,890 - 32,005,858)(31,877,452 - 31,878,124)
sequence
gaattctttaatctgctcatcaatttctacaaaaagcttgtggggatttt
taactacgatcaaactgggaagaaagaacagcttaagaccacagcctacc
aacacccaatcatggtacatctttgcatttacttgggctgtctcactagg
cagtaaggttctgcagtgcacagcatacacatcattcacatctcttttta
gaggtagctgtaagactattctccgatgcaatcataaatggccttgttaa
gctttctcattaaataccattaagtctgtggactccctttatgcacatag
gtagaggtattatttgtaacttattttagagtcaaacagaaaagtcttag
aagacacttatcaagcagggagaaagtagaatttgaagagctcgataact
actacacttaactgtctcaccaatggcttctgtgagactgaagtgtcagc
cgtcacttggtaggatatgttctgttggtgtacagtaataagacgctagg
gagtagcaaggtcatctctgagtatcagtgatgacaatggcaccaacctg
aaaactgtatgtcagcaatgagtgaaaacatatacactttacccaggtct
gtggcctaaggcagagctgaggcaggccgagctcagttctggatctgtag
tgttctaatcatggctgcatcgtacatttactgttcctattaagtgaaac
aacttctctacagttctccatctagatttttttctttgtgtgtatgtgca
ttgtgtgtgtgtgtgtactttgcctgtgtgcacgtgcgtttggagacagg
gttgaaatttggtaatcataatagctcttccttctcattctcttgaggca
aggtccactcccacacccagtgagcttttccacacccagtcagcatttct
ttattctgagaactgaacttttggagtcttgattgtgtatgagcaatcct
aactggggccacctccctg
gaattctttaagtagttagtagttgagaacaaagtcatggagctgcactt
gtagcagcaggaggagaacttacctagtacacacaaaactgtctttattc
cagttctgcatctctacccgaaaccaaatcacaacccaggctctcatgta
caggcttgtaatgattaaatacgaaaaaggaagaatttgtcatgcactta
aattatatgcacgcacatgtgttcatgcacacataccaacacacacacac
acacacacacacacacacacacacacacacactgtcacaaatgaaaataa
aagtgtaagaaatagaaagcaacatagaaatagctgtctcctatgaggct
ttgccagtgccttgtaaatacagaagtggatgctcacagtcatctataag
atggaacacagggcccccaatggagaagctagagaaagtacccaagagct
gaaggggtctacaaccctataggtggaacaacaatatgaactaaccagta
cccccagagctcttgtttctagctgtatatgtagcagaggatttcctagt
cggccatcattgggaagagaggccccttggtcttgcaaactttatatgcc
tcagtacaggggaacgccagggccaagaagtcgtagtgggtaggggagca
gggcggggggagggtataggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32004890_32005858
seq2: B6Ng01-025C16.b_31_999 (reverse)

seq1  CAGGGAGATGG-CCCAGTTA-GATTGCTTCATACACAATCAAGACTACAA  48
      ||||||| ||| |||||||| |||||| |||||||||||||||||| |||
seq2  CAGGGAGGTGGCCCCAGTTAGGATTGC-TCATACACAATCAAGACTCCAA  49

seq1  AAGTTCAGATTCTCAGAATATAGGAAATGCTGACTGGGTGTGGAAAAGCT  98
      |||||||| ||||||||||| | |||||||||||||||||||||||||||
seq2  AAGTTCAG-TTCTCAGAATA-AAGAAATGCTGACTGGGTGTGGAAAAGCT  97

seq1  CACTGGGTGTGGGAGTGGGACCTTGCCTCAAGAAGAATGAGAAGGAAGAG  148
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CACTGGGTGTGGGAGT-GGACCTTGCCTCAAG-AGAATGAGAAGGAAGAG  145

seq1  CTATTATGATTACC-AATATCAACCCTGTCTCCAAACGCACGTGCACACA  197
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  CTATTATGATTACCAAATTTCAACCCTGTCTCCAAACGCACGTGCACACA  195

seq1  GGCAAAGTACACACACACACAC-ATGCACATACACACAAAG-AAAAAATC  245
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GGCAAAGTACACACACACACACAATGCACATACACACAAAGAAAAAAATC  245

seq1  TAGATGGAGAACTGTAGAGAAGTTGTTTCACTTAATAGGAACAGTAAATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGAGAACTGTAGAGAAGTTGTTTCACTTAATAGGAACAGTAAATG  295

seq1  TACGATGCAGCCATGATTAGAACACTACAGATCCAGAACTGAGCTCGGCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATGCAGCCATGATTAGAACACTACAGATCCAGAACTGAGCTCGGCC  345

seq1  TGCCTCAGCTCTGCCTTAGGCCACAGACCTGGGTAAAGTGTATATGTTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGCTCTGCCTTAGGCCACAGACCTGGGTAAAGTGTATATGTTTT  395

seq1  CACTCATTGCTGACATACAGTTTTCAGGTTGGTGCCATTGTCATCACTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTGCTGACATACAGTTTTCAGGTTGGTGCCATTGTCATCACTGA  445

seq1  TACTCAGAGATGACCTTGCTACTCCCTAGCGTCTTATTACTGTACACCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGAGATGACCTTGCTACTCCCTAGCGTCTTATTACTGTACACCAA  495

seq1  CAGAACATATCCTACCAAGTGACGGCTGACACTTCAGTCTCACAGAAGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATATCCTACCAAGTGACGGCTGACACTTCAGTCTCACAGAAGCC  545

seq1  ATTGGTGAGACAGTTAAGTGTAGTAGTTATCGAGCTCTTCAAATTCTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGAGACAGTTAAGTGTAGTAGTTATCGAGCTCTTCAAATTCTACT  595

seq1  TTCTCCCTGCTTGATAAGTGTCTTCTAAGACTTTTCTGTTTGACTCTAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTGCTTGATAAGTGTCTTCTAAGACTTTTCTGTTTGACTCTAAA  645

seq1  ATAAGTTACAAATAATACCTCTACCTATGTGCATAAAGGGAGTCCACAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTACAAATAATACCTCTACCTATGTGCATAAAGGGAGTCCACAGA  695

seq1  CTTAATGGTATTTAATGAGAAAGCTTAACAAGGCCATTTATGATTGCATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGGTATTTAATGAGAAAGCTTAACAAGGCCATTTATGATTGCATC  745

seq1  GGAGAATAGTCTTACAGCTACCTCTAAAAAGAGATGTGAATGATGTGTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATAGTCTTACAGCTACCTCTAAAAAGAGATGTGAATGATGTGTAT  795

seq1  GCTGTGCACTGCAGAACCTTACTGCCTAGTGAGACAGCCCAAGTAAATGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCACTGCAGAACCTTACTGCCTAGTGAGACAGCCCAAGTAAATGC  845

seq1  AAAGATGTACCATGATTGGGTGTTGGTAGGCTGTGGTCTTAAGCTGTTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTACCATGATTGGGTGTTGGTAGGCTGTGGTCTTAAGCTGTTCT  895

seq1  TTCTTCCCAGTTTGATCGTAGTTAAAAATCCCCACAAGCTTTTTGTAGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCAGTTTGATCGTAGTTAAAAATCCCCACAAGCTTTTTGTAGAA  945

seq1  ATTGATGAGCAGATTAAAGAATTC  969
      ||||||||||||||||||||||||
seq2  ATTGATGAGCAGATTAAAGAATTC  969

seq1: chr9_31877452_31878124
seq2: B6Ng01-025C16.g_70_742

seq1  GAATTCTTTAAGTAGTTAGTAGTTGAGAACAAAGTCATGGAGCTGCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGTAGTTAGTAGTTGAGAACAAAGTCATGGAGCTGCACTT  50

seq1  GTAGCAGCAGGAGGAGAACTTACCTAGTACACACAAAACTGTCTTTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGCAGGAGGAGAACTTACCTAGTACACACAAAACTGTCTTTATTC  100

seq1  CAGTTCTGCATCTCTACCCGAAACCAAATCACAACCCAGGCTCTCATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGCATCTCTACCCGAAACCAAATCACAACCCAGGCTCTCATGTA  150

seq1  CAGGCTTGTAATGATTAAATACGAAAAAGGAAGAATTTGTCATGCACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGTAATGATTAAATACGAAAAAGGAAGAATTTGTCATGCACTTA  200

seq1  AATTATATGCACGCACATGTGTTCATGCACACATACCAACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATGCACGCACATGTGTTCATGCACACATACCAACACACACACAC  250

seq1  ACACACACACACACACACACACACACACACACTGTCACAAATGAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACTGTCACAAATGAAAATAA  300

seq1  AAGTGTAAGAAATAGAAAGCAACATAGAAATAGCTGTCTCCTATGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAAGAAATAGAAAGCAACATAGAAATAGCTGTCTCCTATGAGGCT  350

seq1  TTGCCAGTGCCTTGTAAATACAGAAGTGGATGCTCACAGTCATCTATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGTGCCTTGTAAATACAGAAGTGGATGCTCACAGTCATCTATAAG  400

seq1  ATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCAAGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACACAGGGCCCCCAATGGAGAAGCTAGAGAAAGTACCCAAGAGCT  450

seq1  GAAGGGGTCTACAACCCTATAGGTGGAACAACAATATGAACTAACCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGTCTACAACCCTATAGGTGGAACAACAATATGAACTAACCAGTA  500

seq1  CCCCCAGAGCTCTTGTTTCTAGCTGTATATGTAGCAGAGGATTTCCTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAGCTCTTGTTTCTAGCTGTATATGTAGCAGAGGATTTCCTAGT  550

seq1  CGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCC  600

seq1  TCAGTACAGGGGAACGCCAGGGCCAAGAAGTCGTAGTGGGTAGGGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACAGGGGAACGCCAGGGCCAAGAAGTCGTAGTGGGTAGGGGAGCA  650

seq1  GGGCGGGGGGAGGGTATAGGGGG  673
      |||||||||||||||||||||||
seq2  GGGCGGGGGGAGGGTATAGGGGG  673