BAC Information

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BAC

Clone NameB6Ng01-025E02
Chromosome9 (Build37)
Map Location 9,136,767 - 9,137,993
singlet/doubletsinglet
Overlap gene9030420J04Rik
Upstream geneLOC665108, 1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025E02.bB6Ng01-025E02.g
ACCDH856659DH856660
length7391,199
definitionDH856659|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E02, 5' end.DH856660|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccttcaactagactaggctggtgggccatgaagccccagggac
tgtctgtttctgtctccccagtgttgtgaatgaacaatcgaaccaccaca
tccaggtgtttgtttgcttgtttgtttctctctctttttttcttttctcc
tctctctctctctctctttttctttgagacagggtttctttgtgtagccc
tggctgtcctggaactcactctgtagaccaggttggcctcgaactcagaa
atctgcctgcctctgcctcccaagtgtgccaccactgcccagctttttgt
ttttaatgtgggtctagggctgaaactttggtcttcatgcttacatggta
agcactttaatgagcaagtcatctcttcaacccagctttcgtcaactaaa
attcatcaaccagtaacccaaacacatgtagacctctacatgtatgaagt
ggtatttgataatgttctttgctgtgtatacagtcagaaaaaaagcaaaa
accgaaaaatcaaactctgtttatagactttttcttatcatttcttagtc
tctgttctatggctgtgaagagacactgtgacaaaggcactcttataagc
gaaacatctaattggaggcttgctgatgattcagaggttagtcatggtgg
aaggatggaggcatagtgctgagcagtactgaaagctttcctcatgatct
gcaggtatcatccgacgacaaataacacacccccacccc

gaattccttagtccctcctctcccagggcacaaggaaaagtaggaaagta
cacccaatccaatcatgtcctggcaccaacatagtaaggacaagtaattc
ctcaccattcacccccaaagaggagcaaaaccagtagaaaccagatcttc
tatgggaagcagtgccctgaagcagaactgtgggattccctgcacacaga
ccctctatatggatgaaatgaccacaagtgacacatgtagagaatctgat
attttgttgactaaaagcaaacaaggaaaccaacttcaccctgttaacta
tgctctctttagtttgatactgttgagaattcttgttagccaattcttgt
ggtttatatcttaaaatttcattattttattcactttagggactcaggtc
agatctagaacctcatacctgcttagcaaaaatcctaccactggccatca
tcctcatcttagtttttaaatttaacatttgcatactctgacaaacttca
acctgtatataatgaatctgattcatatttagccctccccttgcttgtac
cccttcctacttcttctggatgctgttgccatgccaacacattcccccat
ttaccttcatgtcttcttctcttttacattactacccttgagtttactgg
caattgcatgaacatggtggtgtggccacttactggaatatggtcaatta
ccagtggctacacctctaaagaaaaatgaccctcccttccctaggggcag
ttaagtgccaattccagcctggttttctgtgttcttgaacagtcttgttt
tttttaagaactctgaaacacagtcaaattggctccttgtttggcagtgt
gatgtggatgctcttcagaacctgaggatgggaacctgggctactcttca
ctagtaatagtgtgattcctcctggctacagctgtgtggcataagtggca
ctgacccacttccactcacacatgggcaaagccatgtttagacactttga
tcataattcccatataggacaccatggaaaaggtcttcatcatagtggat
cagccccaaagccaacactgtaattccaacaaaattacttccaacacttt
atagttgactacatgtgcctttttccaaatatggttgtcctctatttcct
gtcagaacactaatctgaacttgatgcaggacggattccagaagaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9136767_9137993
seq2: B6Ng01-025E02.g_67_1265

seq1  GAATTCCTTAGTCCCTCCTCTCCCAGGGCACAAGGAAAAGTAGGAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTCCCTCCTCTCCCAGGGCACAAGGAAAAGTAGGAAAGTA  50

seq1  CACCCAATCCAATCATGTCCTGGCACCAACATAGTAAGGACAAGTAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAATCCAATCATGTCCTGGCACCAACATAGTAAGGACAAGTAATTC  100

seq1  CTCACCATTCACCCCCAAAGAGGAGCAAAACCAGTAGAAACCAGATCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATTCACCCCCAAAGAGGAGCAAAACCAGTAGAAACCAGATCTTC  150

seq1  TATGGGAAGCAGTGCCCTGAAGCAGAACTGTGGGATTCCCTGCACACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGCAGTGCCCTGAAGCAGAACTGTGGGATTCCCTGCACACAGA  200

seq1  CCCTCTATATGGATGAAATGACCACAAGTGACACATGTAGAGAATCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATATGGATGAAATGACCACAAGTGACACATGTAGAGAATCTGAT  250

seq1  ATTTTGTTGACTAAAAGCAAACAAGGAAACCAACTTCACCCTGTTAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGACTAAAAGCAAACAAGGAAACCAACTTCACCCTGTTAACTA  300

seq1  TGCTCTCTTTAGTTTGATACTGTTGAGAATTCTTGTTAGCCAATTCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTTAGTTTGATACTGTTGAGAATTCTTGTTAGCCAATTCTTGT  350

seq1  GGTTTATATCTTAAAATTTCATTATTTTATTCACTTTAGGGACTCAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATATCTTAAAATTTCATTATTTTATTCACTTTAGGGACTCAGGTC  400

seq1  AGATCTAGAACCTCATACCTGCTTAGCAAAAATCCTACCACTGGCCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAGAACCTCATACCTGCTTAGCAAAAATCCTACCACTGGCCATCA  450

seq1  TCCTCATCTTAGTTTTTAAATTTAACATTTGCATACTCTGACAAACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCTTAGTTTTTAAATTTAACATTTGCATACTCTGACAAACTTCA  500

seq1  ACCTGTATATAATGAATCTGATTCATATTTAGCCCTCCCCTTGCTTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATATAATGAATCTGATTCATATTTAGCCCTCCCCTTGCTTGTAC  550

seq1  CCCTTCCTACTTCTTCTGGATGCTGTTGCCATGCCAACACATTCCCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTACTTCTTCTGGATGCTGTTGCCATGCCAACACATTCCCCCAT  600

seq1  TTACCTTCATGTCTTCTTCTCTTTTACATTACTACCCTTGAGTTTACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCATGTCTTCTTCTCTTTTACATTACTACCCTTGAGTTTACTGG  650

seq1  CAATTGCATGAACATGGTGGTGTGGCCACTTACTGGAATATGGTCAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCATGAACATGGTGGTGTGGCCACTTACTGGAATATGGTCAATTA  700

seq1  CCAGTGGCTACACCTCTAAAGAAAAATGACCCTCCCTTCCCTAGGGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCTACACCTCTAAAGAAAAATGACCCTCCCTTCCCTAGGGGCAG  750

seq1  TTAAGTGCCAATTCCAGCCTGGTTTTCTGTGTTCTTGAACAGTCTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGCCAATTCCAGCCTGGTTTTCTGTGTTCTTGAACAGTCTTGTTT  800

seq1  TTTTTAAGAACTCTGAAACACAGTCAAATTGGCTCCTTGTTTGGCAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGAACTCTGAAACACAGTCAAATTGGCTCCTTGTTTGGCAGTGT  850

seq1  GATGTGGATGCTCTTCAGAACCTGAGGATGGGAACCTGGGCTACTCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGATGCTCTTCAGAACCTGAGGATGGGAACCTGGGCTACTCTTCA  900

seq1  CTAGTAATAGTGTGATTCCTCCTGGCTACAGCTGTGTGGCATAAGTGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAATAGTGTGATTCCTCCTGGCTACAGCTGTGTGGCATAAGTGGCA  950

seq1  CTGACCCACTTCCACTCACACATGGGCAAAGCCATGTTTAAGACACTTTG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGACCCACTTCCACTCACACATGGGCAAAGCCATGTTT-AGACACTTTG  999

seq1  ATCATAATTCCCAATATTAGGACACCATGGAAAAAGGTCTCCATCATAGT  1050
      |||||||||||| ||| ||||||||||||| ||||||||| |||||||||
seq2  ATCATAATTCCC-ATA-TAGGACACCATGG-AAAAGGTCTTCATCATAGT  1046

seq1  GGATACAGCCCCAAAGCCAAACACTGTAAATTCCAACAAATATAACTTCC  1100
      |||| ||||||||||||| |||||||| |||||||||||| || ||||||
seq2  GGAT-CAGCCCCAAAGCC-AACACTGT-AATTCCAACAAA-ATTACTTCC  1092

seq1  AAACACTTTATTAAGTTGGACTACATTGTGCTTTTTTCCAAATATGGTTG  1150
       ||||||||||  |||| ||||||| ||||| ||||||||||||||||||
seq2  -AACACTTTAT--AGTT-GACTACA-TGTGCCTTTTTCCAAATATGGTTG  1137

seq1  GTCTCTTCTATTTCCCCTGTCCAGACATCATTCCTGGTACTTTGAAATGG  1200
         || |||||||  ||||||   |||  | | |||  |  ||||    |
seq2  ---TCCTCTATTT--CCTGTCAGAACACTAAT-CTG--AACTTGA---TG  1176

seq1  GAGGAAACTGTATTCCAAGAAGAATAT  1227
       ||||    | ||||| ||||||||||
seq2  CAGGA---CGGATTCC-AGAAGAATAT  1199


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