BAC Information

Click to search

BAC

Clone NameB6Ng01-025K18
Chromosome9 (Build37)
Map Location 95,748,773 - 95,780,998
singlet/doubletdoublet
Overlap gene1700065D16Rik
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122
Downstream geneXrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025K18.bB6Ng01-025K18.g
ACCDH856946DH856947
length1,0941,140
definitionDH856946|Mus musculus domesticus DNA, BAC clone: B6Ng01-025K18, 5' end.DH856947|Mus musculus domesticus DNA, BAC clone: B6Ng01-025K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,748,773 - 95,749,888)(95,779,860 - 95,780,998)
sequence
gaattcactaagtagcctaacttagtaagcacaagtgtactgtatttata
gtaaccatggcctggagagagatggctcagtggttaagagtacccgtcgc
tcctgcagagaacctggattcccagtgcccacacgatagttcacaatcac
ctataactccagttctaggagatccattcgatgccctcttctgacctcca
taggcaccaagcatgtacacggcacacagacagacatgcaggtaaaacac
tcacccataaagtaaaacgcataaatctaatgtaaaatgttttaaagacc
tgaagtaaacatatgtcaaaataaccaggcttccctagaaccaacagagt
gaacatatattacacaagagacttagtagataggcttgcacaacagctgc
tgggcactctgagtggtcagcagaggctgtctacacactggagatgttga
gacccctgtagcagctcactccccaaggctggaaatctcagcagtcccaa
tctgtcactcgatttctggaagattcctggggagacattgttctttagtc
cacactagagagctgaaaaggctgagtactgatgtcaggaaagaatggca
gcaccgtggcagctacagggtagatacactcaccagcaagaggcaaagag
agaagcaactctttgctagggtctccttagatctgcatgccactcactgg
aggaggcctgccttacgggaggctttcccatctaggttaatcacttccag
gaaatgcagatccttatagttgattccatatccaatcagactgatgacca
agattaactactacaccatatgctccaggttttctagaaaattcccagtt
ttgaatatttgctgtcatatgaattaggttcaaacatgtatcccagttgc
tgcttaggaaggaaatgttatcactaataaggagtaggatattttctata
tctcctattgtttgtataaaataatatagctagagttatttggctcatat
ttagtatagtcaccatttagcactcaaatgttgagttttttcccatgatt
aattaacagctctaaaattacttcattaaagtaaattttatgta
gaattctgtgtttaaactttggttttattctcaagatagctcattatata
tatatgcaaatattccaaaatgaaaaaaaaatctgaaatctagtctcaag
cattttgtataaaagacaaactgtgttctctttatcttgccaagtaactt
aagtgacccatacggagtttttgacatgtagtatgtactccataaatatt
gttattctgtctctataacacacaggttaacgctcgtgatgaatgaaaac
aattaatagtcatttctcctcaagtgagaagagatctgctgttctcttag
agaaaatgaaattaaggtcctctgttcccatagtcttatattcctaaaag
gcattgctgttaatgtaaaaccacaagaaatctaaactataattttaaac
ttaaaaattagccagacatgcaaatttaacagcctaaatccataatgaga
ggataaagtcccaaagttgttctctgatctccacacatgcacaacagacc
atgcactctctctgtctctctttcccacacacactaaacttttaagactt
tttattttcttattatacccaagagggttttgcctatgcataggtatatg
tttacaggtgcttggtgccatagaggtcagaagagggttttagatctccc
aaatctgcagtttacagaaagatatgatctgccatatgggtgctgggaac
tgaaatgcaggtctttctggttgtaacaagtactgtttagccccgagcca
tctctatagccctataaaaatttttatattttaaagtaggaagattatat
cagagcagcaagtaaataagccaatacaggcatacgattaaagagagcaa
tctctttttataattacttgcacatatcagttaatttttactataatcag
cataaatcacttaaattaaatatataaaaaacctcaggttcatgaaagga
tgactattctatccattagagtgcccttctagtattgggaacaaaccacc
attggtaaggtagtacagaggacaaagtttgaagctgccgacaaaaggaa
ttgacatcttaagagaactgccttatctaaggaatccacccctgatcagc
tttcaaacgctgacccactgcatatcactaggcaagattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95748773_95749888
seq2: B6Ng01-025K18.b_45_1138

seq1  GAATTCACTAAGTAGCCTAACTTAGTAAGCACAAGTGTACTGTATTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAGTAGCCTAACTTAGTAAGCACAAGTGTACTGTATTTATA  50

seq1  GTAACCATGGCCTGGAGAGAGATGGCTCAGTGGTTAAGAGTACCCGTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCATGGCCTGGAGAGAGATGGCTCAGTGGTTAAGAGTACCCGTCGC  100

seq1  TCCTGCAGAGAACCTGGATTCCCAGTGCCCACACGATAGTTCACAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGAGAACCTGGATTCCCAGTGCCCACACGATAGTTCACAATCAC  150

seq1  CTATAACTCCAGTTCTAGGAGATCCATTCGATGCCCTCTTCTGACCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTCCAGTTCTAGGAGATCCATTCGATGCCCTCTTCTGACCTCCA  200

seq1  TAGGCACCAAGCATGTACACGGCACACAGACAGACATGCAGGTAAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACCAAGCATGTACACGGCACACAGACAGACATGCAGGTAAAACAC  250

seq1  TCACCCATAAAGTAAAACGCATAAATCTAATGTAAAATGTTTTAAAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATAAAGTAAAACGCATAAATCTAATGTAAAATGTTTTAAAGACC  300

seq1  TGAAGTAAACATATGTCAAAATAACCAGGCTTCCCTAGAACCAACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAAACATATGTCAAAATAACCAGGCTTCCCTAGAACCAACAGAGT  350

seq1  GAACATATATTACACAAGAGACTTAGTAGATAGGCTTGCACAACAGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATATTACACAAGAGACTTAGTAGATAGGCTTGCACAACAGCTGC  400

seq1  TGGGCACTCTGAGTGGTCAGCAGAGGCTGTCTACACACTGGAGATGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACTCTGAGTGGTCAGCAGAGGCTGTCTACACACTGGAGATGTTGA  450

seq1  GACCCCTGTAGCAGCTCACTCCCCAAGGCTGGAAATCTCAGCAGTCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTGTAGCAGCTCACTCCCCAAGGCTGGAAATCTCAGCAGTCCCAA  500

seq1  TCTGTCACTCGATTTCTGGAAGATTCCTGGGGAGACATTGTTCTTTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACTCGATTTCTGGAAGATTCCTGGGGAGACATTGTTCTTTAGTC  550

seq1  CACACTAGAGAGCTGAAAAGGCTGAGTACTGATGTCAGGAAAGAATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGAGAGCTGAAAAGGCTGAGTACTGATGTCAGGAAAGAATGGCA  600

seq1  GCACCGTGGCAGCTACAGGGTAGATACACTCACCAGCAAGAGGCAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGTGGCAGCTACAGGGTAGATACACTCACCAGCAAGAGGCAAAGAG  650

seq1  AGAAGCAACTCTTTGCTAGGGTCTCCTTAGATCTGCATGCCACTCACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAACTCTTTGCTAGGGTCTCCTTAGATCTGCATGCCACTCACTGG  700

seq1  AGGAGGCCTGCCTTACGGGAGGCTTTCCCATCTAGGTTAATCACTTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCTGCCTTACGGGAGGCTTTCCCATCTAGGTTAATCACTTCCAG  750

seq1  GAAATGCAGATCCTTATAGTTGATTCCATATCCAATCAGACTGATGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAGATCCTTATAGTTGATTCCATATCCAATCAGACTGATGACCA  800

seq1  AGATTAACTACTACACCATATGCTCCAGGTTTTCTAGAAAATTCCCAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAACTACTACACCATATGCTCCAGGTTTTCTAGAAAATTCCCAGTT  850

seq1  TTGAATATTTGCTGTCATATGAATTAGGTTCAAACATGTATCCCAGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATTTGCTGTCATATGAATTAGGTTCAAACATGTATCCCAGTTGC  900

seq1  TGCTTAGGAAGGAAATGTTATCAACTAATAAGGAAGTAGGAATATTTTCT  950
      |||||||||||||||||||||| |||||||||| |||||| |||||||||
seq2  TGCTTAGGAAGGAAATGTTATC-ACTAATAAGG-AGTAGG-ATATTTTCT  947

seq1  ATATCTCCTATTGTTTGTATAAAATAATAATAGCTAAGAGTTATTTGGCT  1000
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  ATATCTCCTATTGTTTGTATAAAATAAT-ATAGCT-AGAGTTATTTGGCT  995

seq1  CATATTTAGTATAAGTCACCATTTTAAGCACTTCAAAATGTTGAGGTTTT  1050
      |||||||||||| |||||||||||  ||||||   ||||||||||   ||
seq2  CATATTTAGTAT-AGTCACCATTT--AGCACT--CAAATGTTGAG---TT  1037

seq1  TTTCCCCATGGAATATATATAACAGCTCTAAAAATTATCTTCATTATAAG  1100
      ||| ||||||  || ||  |||||||||| ||||||| |||||||| |||
seq2  TTTTCCCATG--AT-TAATTAACAGCTCT-AAAATTA-CTTCATTA-AAG  1081

seq1  TAAAATTTTTTATGTA  1116
      ||||   |||||||||
seq2  TAAA---TTTTATGTA  1094

seq1: chr9_95779860_95780998
seq2: B6Ng01-025K18.g_69_1208 (reverse)

seq1  AAATCTTG-CTAGTG-TATGCAGTGGTGTCAGCGTTTGGAAGCTGATTAT  48
      |||||||| |||||| |||||||||| ||||||||||| |||||||| | 
seq2  AAATCTTGCCTAGTGATATGCAGTGG-GTCAGCGTTTGAAAGCTGATCA-  48

seq1  GGGGTGGA-TCCCTAGATAAGGCAG-TCTCT--AGATGGTCCA-TCCTTT  93
      |||||||| ||| |||||||||||| |||||  |||| ||| | ||||||
seq2  GGGGTGGATTCCTTAGATAAGGCAGTTCTCTTAAGAT-GTCAATTCCTTT  97

seq1  TGTC-GCAGCTCCAAACTTTGT-CTCTGTAACTCCTT-CCATGGGTGTTT  140
      |||| |||||| |||||||||| |||||||   |||| |||  |||| ||
seq2  TGTCGGCAGCTTCAAACTTTGTCCTCTGTACTACCTTACCAATGGTGGTT  147

seq1  TGTTCCCAATTCTAAGAAGGGGCACTCTAATGGGATAGAATAGTCATCCT  190
      |||||||||| || |||| |||||||||||| ||||||||||||||||||
seq2  TGTTCCCAATACT-AGAA-GGGCACTCTAAT-GGATAGAATAGTCATCCT  194

seq1  TTCATGAACCTGAGGTTTTTTAATATAATTTTATTTTAGTGATTTTATGC  240
      ||||||||||||||||||||| |||| |||| |||| ||||| |||||||
seq2  TTCATGAACCTGAGGTTTTTT-ATAT-ATTTAATTTAAGTGA-TTTATGC  241

seq1  TGATTATAGTTATAAATTAACTGATATTGTGCAAGTAATTATAAAAAGAG  290
      ||||||||| || ||||||||||||| |||||||||||||||||||||||
seq2  TGATTATAG-TAAAAATTAACTGATA-TGTGCAAGTAATTATAAAAAGAG  289

seq1  ATTGCTCTCTTTAATCGTATGCCTGTATTTGGCTTATTTACTTGCTGCTC  340
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTGCTCTCTTTAATCGTATGCCTGTA-TTGGCTTATTTACTTGCTGCTC  338

seq1  TGATTATAATTCTTCCTACTTTAAAATATTAAAATTTTTATAGGGCTATA  390
      ||| ||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  TGA-TATAA-TCTTCCTACTTTAAAATATAAAAATTTTTATAGGGCTATA  386

seq1  GAGATGGCTCGGGGCT-AACAGTACTTGTTACAA-CAG-AAGACCTGCA-  436
      |||||||||||||||| ||||||||||||||||| ||| |||||||||| 
seq2  GAGATGGCTCGGGGCTAAACAGTACTTGTTACAACCAGAAAGACCTGCAT  436

seq1  TTCAGTTCCCAGCACCCATATGGCAGATCATATCTTTCTGT-AACTGCAG  485
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCAGTTCCCAGCACCCATATGGCAGATCATATCTTTCTGTAAACTGCAG  486

seq1  ATTTGGGAGATCTAAAACCCTCTTCTGACCTCTATGGCACCAAGCACCTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAGATCTAAAACCCTCTTCTGACCTCTATGGCACCAAGCACCTG  536

seq1  TAAACATATACCTATGCATAGGCAAAACCCTCTTGGGTATAATAAGAAAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATATACCTATGCATAGGCAAAACCCTCTTGGGTATAATAAGAAAA  586

seq1  TAAAAAGTCTTAAAAGTTTAGTGTGTGTGGGAAAGAGAGACAGAGAGAGT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTCTTAAAAGTTTAGTGTGTGTGGGAAAGAGAGACAGAGAGAGT  636

seq1  GCATGGTCTGTTGTGCATGTGTGGAGATCAGAGAACAACTTTGGGACTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCTGTTGTGCATGTGTGGAGATCAGAGAACAACTTTGGGACTTT  686

seq1  ATCCTCTCATTATGGATTTAGGCTGTTAAATTTGCATGTCTGGCTAATTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCATTATGGATTTAGGCTGTTAAATTTGCATGTCTGGCTAATTT  736

seq1  TTAAGTTTAAAATTATAGTTTAGATTTCTTGTGGTTTTACATTAACAGCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTAAAATTATAGTTTAGATTTCTTGTGGTTTTACATTAACAGCA  786

seq1  ATGCCTTTTAGGAATATAAGACTATGGGAACAGAGGACCTTAATTTCATT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTAGGAATATAAGACTATGGGAACAGAGGACCTTAATTTCATT  836

seq1  TTCTCTAAGAGAACAGCAGATCTCTTCTCACTTGAGGAGAAATGACTATT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAGAGAACAGCAGATCTCTTCTCACTTGAGGAGAAATGACTATT  886

seq1  AATTGTTTTCATTCATCACGAGCGTTAACCTGTGTGTTATAGAGACAGAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTCATTCATCACGAGCGTTAACCTGTGTGTTATAGAGACAGAA  936

seq1  TAACAATATTTATGGAGTACATACTACATGTCAAAAACTCCGTATGGGTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATATTTATGGAGTACATACTACATGTCAAAAACTCCGTATGGGTC  986

seq1  ACTTAAGTTACTTGGCAAGATAAAGAGAACACAGTTTGTCTTTTATACAA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTTACTTGGCAAGATAAAGAGAACACAGTTTGTCTTTTATACAA  1036

seq1  AATGCTTGAGACTAGATTTCAGATTTTTTTTTCATTTTGGAATATTTGCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGAGACTAGATTTCAGATTTTTTTTTCATTTTGGAATATTTGCA  1086

seq1  TATATATATAATGAGCTATCTTGAGAATAAAACCAAAGTTTAAACACAGA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATAATGAGCTATCTTGAGAATAAAACCAAAGTTTAAACACAGA  1136

seq1  ATTC  1139
      ||||
seq2  ATTC  1140