BAC Information

Click to search

BAC

Clone NameB6Ng01-025M01
Chromosome9 (Build37)
Map Location 19,469,090 - 19,561,308
singlet/doubletdoublet
Overlap geneLOC665751, Olfr857, Olfr858-ps1
Upstream geneMuc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341
Downstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025M01.bB6Ng01-025M01.g
ACCDH856993DH856994
length1,1441,142
definitionDH856993|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M01, 5' end.DH856994|Mus musculus domesticus DNA, BAC clone: B6Ng01-025M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,469,090 - 19,470,256)(19,560,152 - 19,561,308)
sequence
gaattcagaataaagggcagacactgaatgtttatacacaatgaaaacaa
acgtgttaaagttttttttgtgacaaagtttttaaataaaggaagaaaga
ttatgtagtattctttctgtagtttctgctcttggctagctaacaattgc
ttttatgctatcgtgcagctccatagaatgatagaagacttataggaagc
aagttgttcacttcctgccagaaaaaaaaaaaaagagagaaagtaacttg
gagagtgtaaaatacctttacaaggtctacccaaacagctcactttccca
atcatgtcttatattctatagtttctacaaactgacagtatttttcttaa
ttatgcatatacccataaatcaaccagttgataaactcagaatctttata
atctggagacttccagaatgccctacatctggctattcaattagggctca
aatcttaaaaccttgagctttgcgggatgattaagatccaagaaacaaaa
atacaaattttataaatttctgaattctagttcttaatgtggaatttggt
gacattctgtgctttgttgatgtcatttcataaatgataccttctatttc
ccctttataggtacagattgaattttttaatgttagtgtcatttgaaaag
tgatagctgcttttaaaaattattgaaaatatttttaatgcactgcattc
tagctatagttgttaagctggaatgcctgtttactcatgtacaagttggg
aaacctcatctaccatccttctctcaactccaccggaatagagaaaactc
tctaactcaaagaacactctggcctagcatgtcatcagcattcgtcattt
ccacattttcagcaactcacacaagagtgcctaaacagggggttagtttt
tgaccatggatgggcacagtaccagctcctagcagacacatcaactactt
gcccaacctctataaaaccctttcttcttagcccatatgggcaacttcat
tgacctccactgcagattggtgagcccaccagagactggttctataaccc
gcttattactttgatctggttagctggcctctatctagacctgaggaaga
aaaatctatcaataattctctggtcgatctcctcttacacctgc
gaattcatgtagagaagaattggaacatgtaataatttaccctgctttga
atcttctttaattccattatgctgctgtctaacttctctgtcaccaacat
attccttcactaatgtcaaagacagatgatattctttcctcagattcaaa
tgatgctgggccattatgaatcctactcaaccataagtcttatctcttct
aatatattttatctctatctttctttttgtctccttgtcactttcaccat
cctcatcagcatctcatgaagaagaggttgatttccaatgagatattttg
ccttcagctcttggctagtgggattacatatataagtgaatttagaaagt
tttatgttgaatatatcagtctttatggaaatggctttagtgtctacaat
gtaataatagaaacttagtggaaattaccttttgttacatagttcagttt
ttatttttgaactgtcctaaattaaatttcaatatgtgaagagccaacac
atcgagttttaatttactgacatgaagaataatcagacacctacttattt
ggacagggaaaaataataattgcatgtgtgcatgcaattctagaaataat
attttgccggcaaccaaatggcaggcatatacatacatacatacatacat
acatacatacatacatacatacatacatctcagtaaagtaaggccaaaat
tgattctttttataggattatgcaaaaagagcatgtgatgctgaacagtc
ttttgttctgagaactgggatcaaatactatatggcaaaaagaaactata
gtctgcctcaacagataacgatatttattagtaaatgcaatgagagaaaa
catctctcccaggggaaattaagaaacctccaaggtaggtctggctcaca
taatctgtatgggtagaagagtgattgggaaagagaaatttgtgtcattg
tgagcctctgtgatgatctatgatctctctttcctgaaatatttccttca
tggaaagcagattatattggaacctagtgcctctatagcatttgactgtg
agtgtggctgactgaaaagtgtccaggtcagctgtataaataaaggttct
tgtttaacactgaaacacactatcatgccagctgggttcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19469090_19470256
seq2: B6Ng01-025M01.b_44_1187

seq1  GAATTCAGAATAAAGGGCAGACACTGAATGTTTATACACAATGAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAAAGGGCAGACACTGAATGTTTATACACAATGAAAACAA  50

seq1  ACGTGTTAAAGTTTTTTTTGTGACAAAGTTTTTAAATAAAGGAAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTAAAGTTTTTTTTGTGACAAAGTTTTTAAATAAAGGAAGAAAGA  100

seq1  TTATGTAGTATTCTTTCTGTAGTTTCTGCTCTTGGCTAGCTAACAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGTATTCTTTCTGTAGTTTCTGCTCTTGGCTAGCTAACAATTGC  150

seq1  TTTTATGCTATCGTGCAGCTCCATAGAATGATAGAAGACTTATAGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTATCGTGCAGCTCCATAGAATGATAGAAGACTTATAGGAAGC  200

seq1  AAGTTGTTCACTTCCTGCCAGAAAAAAAAAAAAAGAGAGAAAGTAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTCACTTCCTGCCAGAAAAAAAAAAAAAGAGAGAAAGTAACTTG  250

seq1  GAGAGTGTAAAATACCTTTACAAGGTCTACCCAAACAGCTCACTTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTAAAATACCTTTACAAGGTCTACCCAAACAGCTCACTTTCCCA  300

seq1  ATCATGTCTTATATTCTATAGTTTCTACAAACTGACAGTATTTTTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCTTATATTCTATAGTTTCTACAAACTGACAGTATTTTTCTTAA  350

seq1  TTATGCATATACCCATAAATCAACCAGTTGATAAACTCAGAATCTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATATACCCATAAATCAACCAGTTGATAAACTCAGAATCTTTATA  400

seq1  ATCTGGAGACTTCCAGAATGCCCTACATCTGGCTATTCAATTAGGGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGACTTCCAGAATGCCCTACATCTGGCTATTCAATTAGGGCTCA  450

seq1  AATCTTAAAACCTTGAGCTTTGCGGGATGATTAAGATCCAAGAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAACCTTGAGCTTTGCGGGATGATTAAGATCCAAGAAACAAAA  500

seq1  ATACAAATTTTATAAATTTCTGAATTCTAGTTCTTAATGTGGAATTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATTTTATAAATTTCTGAATTCTAGTTCTTAATGTGGAATTTGGT  550

seq1  GACATTCTGTGCTTTGTTGATGTCATTTCATAAATGATACCTTCTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTGTGCTTTGTTGATGTCATTTCATAAATGATACCTTCTATTTC  600

seq1  CCCTTTATAGGTACAGATTGAATTTTTTAATGTTAGTGTCATTTGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATAGGTACAGATTGAATTTTTTAATGTTAGTGTCATTTGAAAAG  650

seq1  TGATAGCTGCTTTTAAAAATTATTGAAAATATTTTTAATGCACTGCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTGCTTTTAAAAATTATTGAAAATATTTTTAATGCACTGCATTC  700

seq1  TAGCTATAGTTGTTAAGCTGGAATGCCTGTTTACTCATGTACAAGTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATAGTTGTTAAGCTGGAATGCCTGTTTACTCATGTACAAGTTGGG  750

seq1  AAACCTCATCTACCATCCTTCTCTCAACTCCACCGGAATAGAGAAAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCATCTACCATCCTTCTCTCAACTCCACCGGAATAGAGAAAACTC  800

seq1  TCTAACTCAAAGAACACTCTGGCCTAGCATGTCATCAGCATTCGTCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCAAAGAACACTCTGGCCTAGCATGTCATCAGCATTCGTCATTT  850

seq1  CCACATTTTCAGCAACTCACACAAGAGTGCCTAAACAGGGGGTTAGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTCAGCAACTCACACAAGAGTGCCTAAACAGGGGGTTAGTTTT  900

seq1  TGACCATGGATGGGCACAGTACCAGCTCCTAGCAGACACATCAACTACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGGATGGGCACAGTACCAGCTCCTAGCAGACACATCAACTACTT  950

seq1  GCCCAACCTCTATAAAACCCTTTCTTCTTAGCCCATATGGGCAACTTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACCTCTATAAAACCCTTTCTTCTTAGCCCATATGGGCAACTTCAT  1000

seq1  TGACCTCCACCTGCAAGATTGGTGAGCCCACCAGAGAACTGGTTCCTAAT  1050
      ||||||||| |||| ||||||||||||||||||||| ||||||| |||  
seq2  TGACCTCCA-CTGC-AGATTGGTGAGCCCACCAGAG-ACTGGTT-CTA--  1044

seq1  AAACCCGCTTTATTTACTTTGAATCTGGTATAAGCTGGCCTCTATCTAAG  1100
       |||||||||   |||||||| ||||||  | ||||||||||||||| ||
seq2  TAACCCGCTT--ATTACTTTG-ATCTGG--TTAGCTGGCCTCTATCT-AG  1088

seq1  ACACTGAGGGAAAGAAAAATCCTATCAATAAATACTCTGGTCCCAAATCC  1150
      || ||||||  ||||||||| |||||||| ||| ||||||||    ||| 
seq2  AC-CTGAGG--AAGAAAAAT-CTATCAAT-AATTCTCTGGTC---GATC-  1129

seq1  TCCCTCTTACTACCTGC  1167
        |||||||| ||||||
seq2  -TCCTCTTAC-ACCTGC  1144

seq1: chr9_19560152_19561308
seq2: B6Ng01-025M01.g_63_1204 (reverse)

seq1  CAAGAACCCAGGCTGGCATTGATAGTGTGTCTCAGTTGTTAAACAGGAAA  50
      |||||||||| ||||||| ||||||||||| |||| ||||||||| | ||
seq2  CAAGAACCCA-GCTGGCA-TGATAGTGTGTTTCAG-TGTTAAACAAG-AA  46

seq1  CCTATAGTATTACAGCTGACCTGGACCAACCTTTTCAGTCAGCCACAACT  100
      ||| || |  ||||||||||||||||    |||||||||||||||| |||
seq2  CCTTTATTTATACAGCTGACCTGGAC---ACTTTTCAGTCAGCCAC-ACT  92

seq1  CACAGTCAAATGCTTATAGAGGCAACCTAGGTTCCAATATAATCTGCTTT  150
      ||||||||||||| ||||||||||  ||||||||||||||||||||||||
seq2  CACAGTCAAATGC-TATAGAGGCA--CTAGGTTCCAATATAATCTGCTTT  139

seq1  CCATGAAGGAAATATTTCCAGGAAAGAGAGATCATAGATCATCACAGAGG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATGAAGGAAATATTT-CAGGAAAGAGAGATCATAGATCATCACAGAGG  188

seq1  CTCCACAATTGACACAAATTTCTCTTTCCCAATCACCTCTTCTACCCCTA  250
      || ||||| |||||||||||||||||||||||||| ||||||||||| ||
seq2  CT-CACAA-TGACACAAATTTCTCTTTCCCAATCA-CTCTTCTACCCATA  235

seq1  CAGATTATGTGAGCCAGACCTACCTTGGAGGTTTCTTAATTTCCCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATGTGAGCCAGACCTACCTTGGAGGTTTCTTAATTTCCCCTGGG  285

seq1  AGAGATGTTTTCTCTCATTGCATTTACTAATAAATATCGTTATCTGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTTTTCTCTCATTGCATTTACTAATAAATATCGTTATCTGTTGA  335

seq1  GGCAGACTATAGTTTCTTTTTGCCATATAGTATTTGATCCCAGTTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTATAGTTTCTTTTTGCCATATAGTATTTGATCCCAGTTCTCAG  385

seq1  AACAAAAGACTGTTCAGCATCACATGCTCTTTTTGCATAATCCTATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGACTGTTCAGCATCACATGCTCTTTTTGCATAATCCTATAAAA  435

seq1  AGAATCAATTTTGGCCTTACTTTACTGAGATGTATGTATGTATGTATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAATTTTGGCCTTACTTTACTGAGATGTATGTATGTATGTATGTA  485

seq1  TGTATGTATGTATGTATGTATGTATGTATATGCCTGCCATTTGGTTGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTATGTATGTATGTATATGCCTGCCATTTGGTTGCCG  535

seq1  GCAAAATATTATTTCTAGAATTGCATGCACACATGCAATTATTATTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATATTATTTCTAGAATTGCATGCACACATGCAATTATTATTTTTC  585

seq1  CCTGTCCAAATAAGTAGGTGTCTGATTATTCTTCATGTCAGTAAATTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCAAATAAGTAGGTGTCTGATTATTCTTCATGTCAGTAAATTAAA  635

seq1  ACTCGATGTGTTGGCTCTTCACATATTGAAATTTAATTTAGGACAGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGATGTGTTGGCTCTTCACATATTGAAATTTAATTTAGGACAGTTCA  685

seq1  AAAATAAAAACTGAACTATGTAACAAAAGGTAATTTCCACTAAGTTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAACTGAACTATGTAACAAAAGGTAATTTCCACTAAGTTTCTA  735

seq1  TTATTACATTGTAGACACTAAAGCCATTTCCATAAAGACTGATATATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATTGTAGACACTAAAGCCATTTCCATAAAGACTGATATATTCA  785

seq1  ACATAAAACTTTCTAAATTCACTTATATATGTAATCCCACTAGCCAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACTTTCTAAATTCACTTATATATGTAATCCCACTAGCCAAGAG  835

seq1  CTGAAGGCAAAATATCTCATTGGAAATCAACCTCTTCTTCATGAGATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCAAAATATCTCATTGGAAATCAACCTCTTCTTCATGAGATGCT  885

seq1  GATGAGGATGGTGAAAGTGACAAGGAGACAAAAAGAAAGATAGAGATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGATGGTGAAAGTGACAAGGAGACAAAAAGAAAGATAGAGATAAA  935

seq1  ATATATTAGAAGAGATAAGACTTATGGTTGAGTAGGATTCATAATGGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAGAAGAGATAAGACTTATGGTTGAGTAGGATTCATAATGGCCC  985

seq1  AGCATCATTTGAATCTGAGGAAAGAATATCATCTGTCTTTGACATTAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATTTGAATCTGAGGAAAGAATATCATCTGTCTTTGACATTAGTG  1035

seq1  AAGGAATATGTTGGTGACAGAGAAGTTAGACAGCAGCATAATGGAATTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATATGTTGGTGACAGAGAAGTTAGACAGCAGCATAATGGAATTAA  1085

seq1  AGAAGATTCAAAGCAGGGTAAATTATTACATGTTCCAATTCTTCTCTACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTCAAAGCAGGGTAAATTATTACATGTTCCAATTCTTCTCTACA  1135

seq1  TGAATTC  1157
      |||||||
seq2  TGAATTC  1142