BAC Information

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BAC

Clone NameB6Ng01-026C10
Chromosome9 (Build37)
Map Location 111,778,151 - 111,898,902
singlet/doubletdoublet
Overlap gene4930545L08Rik
Upstream geneTmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream geneArpp21, LOC100039341, LOC620760, LOC100043800, EG622110, LOC100039391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026C10.bB6Ng01-026C10.g
ACCDH857275DH857276
length1,115422
definitionDH857275|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C10, 5' end.DH857276|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,897,769 - 111,898,902)(111,778,151 - 111,778,580)
sequence
gaattctcatttctgcgcccagcatcctctcagtgctctaagctttttat
ttatccgtttagtccttgaaatggaaaggggacaaatcaaggaactaaag
agaaacaaagataacattcctggggctggctggaagggaatattcagggc
cacccctgtatggatgctggctagagagggaatatcagctgactatcccc
gggatctgtcccagagttgttactactaaaagccgcccctcccccatctc
ctctgactccctctctacttattttatcgtttttagaaacctaagatttg
ggcttaactagatgctgctattaataatatttttaaatgtattttaagat
ttcctccactctgtatctgattcttttgagatgccagactaggatgatcc
agttgaatgtcttgcctgtgtggctggattgcagatcatttgtgtaaaga
acagaacatttttcactttgccctacttttaaagcagcaaacctaataaa
ataaataaaattttgggagaaaatgaaccaacttcccagaagcattaaga
ggattgaagtggacagagtccatatattcttatagagccaggaggaggca
ggcagtaatggacccagttattatgatcaagaagtagctgaggtctctgg
caggaggcaccatgctatccttgctggcacatctaatatctgcatcttaa
agtcacagggatgctggcagtgaaggtgtgctgcatgtatattattatag
acagcgtgctctgagcctggtgtgtgcctcacagtctcaaaagaaaatgg
gaatatcccatgtgttagtaagggaaactgaagctacaggcattgacaat
ttatccaggacagattcttctaaagctaacctattttcttctggtctgac
tttaaagcccggtgaaacaatagccagcatacgccgagtccttgggactg
agtggcaacccttcagatagcctggagacagtgtggggtctctcgagcag
ggcttctcaacattattcttggtgtgatctgctgttcgctggagtccaag
accacaaattcaacggcatgtcagaactggtgctctgatgatttggaaga
ttggaggtttgaaaa
acattccatcggaccccaggaccagctacaggcttcggggtgactttgtc
aggcctcaaggtgactttgttgatttcaatataaagtttccaaatcaaca
caactggtagaaaatttggtgaccagggcgagcaggcacagaaaaacttg
aaattaatatggattttgctgatcaaaagaaaagaagaaaaataagaatt
ttactgaagtgggtataataattggcaggttctcatttagtgtgaatggc
aaaatcaacataaatttacatgtttcatgtaatcagtaagaaagcataag
ggagactctaaagaataaacaggaataataaaagccaacaaacaagcaga
cacaccttcacttagagtgttcctgatacttgtgaagccctgttttccat
gtgtgtgtgtgtgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111897769_111898902
seq2: B6Ng01-026C10.b_49_1163 (reverse)

seq1  TTTTCTCAAAACACTCCAAATCTTCCCAGATCATCAGAAGCAGCAGCTCC  50
      |||||   |||| |||| |||||| ||| |||||||| |||| ||| | |
seq2  TTTTC---AAAC-CTCC-AATCTT-CCAAATCATCAG-AGCACCAG-TTC  42

seq1  TGACATGCCGGTTGAAATGTGGGTCTTGGGACTACAGCAGAACACGCAGA  100
      ||||||||| |||||| |   |||||| ||||| |||| ||||| |||||
seq2  TGACATGCC-GTTGAATTTGTGGTCTT-GGACTCCAGC-GAACA-GCAGA  88

seq1  TTCACA-CAAGAATAATGTTGAGAAGCCCTGGCTCGAGAGGACCCCACAC  149
       ||||| ||||||||||||||||||||||| |||||||| ||||||||||
seq2  -TCACACCAAGAATAATGTTGAGAAGCCCT-GCTCGAGA-GACCCCACAC  135

seq1  TGTCTCCAGGGCTATCTGAAGGGTTGCCACTCAGTCCCAAGGACTCGGCG  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCA-GGCTATCTGAAGGGTTGCCACTCAGTCCCAAGGACTCGGCG  184

seq1  TATGCTGGCTATTGTTTCACCGGGCTTTAAAGTCAGACCAGAAGGAAATA  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATGCTGGCTATTGTTTCACCGGGCTTTAAAGTCAGACCAGAAGAAAATA  234

seq1  GGTTAAGCTTTAAGAAGAATCTGTCCTTGGATAAATTGTCAATGCCTGTA  299
      |||| |||||| |||||||||||||| |||||||||||||||||||||||
seq2  GGTT-AGCTTT-AGAAGAATCTGTCC-TGGATAAATTGTCAATGCCTGTA  281

seq1  GCTTCAGTTTCCCTTACTAACACATGGGATATTCCCATTTTCTTTTTGAG  349
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTTCAGTTTCCCTTACTAACACATGGGATATTCCCATTTTC-TTTTGAG  330

seq1  ACTGTGAGGCACACACCAGGCTCAGAGCACGCTGTCTATAATAATATACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGGCACACACCAGGCTCAGAGCACGCTGTCTATAATAATATACA  380

seq1  TGCAGCACACCTTCACTGCCAGCATCCCTGTGACTTTAAGATGCAGATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCACACCTTCACTGCCAGCATCCCTGTGACTTTAAGATGCAGATAT  430

seq1  TAGATGTGCCAGCAAGGATAGCATGGTGCCTCCTGCCAGAGACCTCAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGCCAGCAAGGATAGCATGGTGCCTCCTGCCAGAGACCTCAGCT  480

seq1  ACTTCTTGATCATAATAACTGGGTCCATTACTGCCTGCCTCCTCCTGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGATCATAATAACTGGGTCCATTACTGCCTGCCTCCTCCTGGCT  530

seq1  CTATAAGAATATATGGACTCTGTCCACTTCAATCCTCTTAATGCTTCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAATATATGGACTCTGTCCACTTCAATCCTCTTAATGCTTCTGG  580

seq1  GAAGTTGGTTCATTTTCTCCCAAAATTTTATTTATTTTATTAGGTTTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGTTCATTTTCTCCCAAAATTTTATTTATTTTATTAGGTTTGCT  630

seq1  GCTTTAAAAGTAGGGCAAAGTGAAAAATGTTCTGTTCTTTACACAAATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAAGTAGGGCAAAGTGAAAAATGTTCTGTTCTTTACACAAATGA  680

seq1  TCTGCAATCCAGCCACACAGGCAAGACATTCAACTGGATCATCCTAGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATCCAGCCACACAGGCAAGACATTCAACTGGATCATCCTAGTCT  730

seq1  GGCATCTCAAAAGAATCAGATACAGAGTGGAGGAAATCTTAAAATACATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCAAAAGAATCAGATACAGAGTGGAGGAAATCTTAAAATACATT  780

seq1  TAAAAATATTATTAATAGCAGCATCTAGTTAAGCCCAAATCTTAGGTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTATTAATAGCAGCATCTAGTTAAGCCCAAATCTTAGGTTTC  830

seq1  TAAAAACGATAAAATAAGTAGAGAGGGAGTCAGAGGAGATGGGGGAGGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACGATAAAATAAGTAGAGAGGGAGTCAGAGGAGATGGGGGAGGGG  880

seq1  CGGCTTTTAGTAGTAACAACTCTGGGACAGATCCCGGGGATAGTCAGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTTAGTAGTAACAACTCTGGGACAGATCCCGGGGATAGTCAGCTG  930

seq1  ATATTCCCTCTCTAGCCAGCATCCATACAGGGGTGGCCCTGAATATTCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCTCTCTAGCCAGCATCCATACAGGGGTGGCCCTGAATATTCCC  980

seq1  TTCCAGCCAGCCCCAGGAATGTTATCTTTGTTTCTCTTTAGTTCCTTGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCAGCCCCAGGAATGTTATCTTTGTTTCTCTTTAGTTCCTTGAT  1030

seq1  TTGTCCCCTTTCCATTTCAAGGACTAAACGGATAAATAAAAAGCTTAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCCTTTCCATTTCAAGGACTAAACGGATAAATAAAAAGCTTAGAG  1080

seq1  CACTGAGAGGATGCTGGGCGCAGAAATGAGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGGATGCTGGGCGCAGAAATGAGAATTC  1115

seq1: chr9_111778151_111778580
seq2: B6Ng01-026C10.g_67_494

seq1  GAATTCACATTCCATCGGACCCCAGGACCAGCTACAGGCTTCGGGGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCCATCGGACCCCAGGACCAGCTACAGGCTTCGGGGTGAC  50

seq1  TTTGTCAGGCCTCAAGGTGACTTTGTTGATTTCAATATAAAGTTTCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGGCCTCAAGGTGACTTTGTTGATTTCAATATAAAGTTTCCAAA  100

seq1  TCAACACAACTGGTAGAAAATTTGGTGACCAGGGCGAGCAGGCACAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAACTGGTAGAAAATTTGGTGACCAGGGCGAGCAGGCACAGAAA  150

seq1  AACTTGAAATTAATATGGATTTTGCTGATCAAAAGAAAAGAAGAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAATTAATATGGATTTTGCTGATCAAAAGAAAAGAAGAAAAATA  200

seq1  AGAATTTTACTGAAGTGGGTATAATAATTGGCAGGTTCTCATTTAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTACTGAAGTGGGTATAATAATTGGCAGGTTCTCATTTAGTGTG  250

seq1  AATGGCAAAATCAACATAAATTTACATGTTTCATGTAATCAGTAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAAAATCAACATAAATTTACATGTTTCATGTAATCAGTAAGAAAG  300

seq1  CATAAGGGAGACTCTAAAGAATAAACAGGAATAATAAAAGCCAACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGAGACTCTAAAGAATAAACAGGAATAATAAAAGCCAACAAACA  350

seq1  AGCAGACACACCTTCACTTAGAGTGTTCCTGATACTTGTGAAGCCCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACACACCTTCACTTAGAGTGTTCCTGATACTTGTGAAGCCCTGTT  400

seq1  TTCCATGTGTGTGTGTGTGTGGGGGGGGGG  430
      ||||||||||||||||||| ||||||||  
seq2  TTCCATGTGTGTGTGTGTGGGGGGGGGG--  428