BAC Information

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BAC

Clone NameB6Ng01-026E11
Chromosome9 (Build37)
Map Location 42,257,854 - 42,391,023
singlet/doubletdoublet
Overlap geneTbcel, Grik4
Upstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d, Tecta
Downstream geneArhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026E11.bB6Ng01-026E11.g
ACCDH857369DH857370
length1,076614
definitionDH857369|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E11, 5' end.DH857370|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,257,854 - 42,258,932)(42,390,410 - 42,391,023)
sequence
gaattcaccagaggtagctggcagcttgctgttgaccctaacacagagat
ggccagagtctcaagtaggaccacagtcagcagaacagaagttacataag
caagcaacaagcatcgcctttcccccctcagaggtggggtacataggctt
tacctcatgccagtcttggagcttgttgtcagaaagatcgagttctgaca
cgtgagcacagaaggctgcgatttctctttcatctcccgcgcaggtaatg
ccgcagctgttcaacacgagcacgctcgggaggttgaggcgatctgaatt
attggaaacacaaaacacttgctccactcagcctcgctcctgtctgtgta
cattcgccccaggcatcataaggaaacaaaccctatctcctgcattccaa
gagggtcttgggaccttgaatcctaaagagagttaaatctgggccaggaa
gagctcagaggtgctggcctccctccagtctcctgggctctgctccccgc
tgcctgtcgccagccaccagcaacgcgtcacgatcttcttgcctacacct
cagtcccagctaacttgtatcttagaccaccatcgactgacctcaattct
gtagttctgaaaagcattctgtcccactcttttctctctagtgctccttt
taaatgttatctcaaactactaatgaattatctgctaagccacctctgtc
aagtcggtgtgttccaaacatcttcctcacttatgggaagccaatcaaaa
tgctgtttcttttgttcctgcgtatcaattattcccattttacactcatg
tattaacagattttcccttatgaaagtatatctttctttaaaaataaatt
cctaatgggagaaaaggcttcagagtctgaaatatgcaaagatcagtcag
cagagaccaatctgaccatgcctgctctaagtgcgtaagtgtatcttatg
tacataaccccgcttctcactatcctactgaaaggagaaagtgacaacgc
accactttttcaccacttggaaaaaaaccatgcacttgaaggtctgaatt
ctaacttagagactcgatttaggttt
gaattcttgattccccagctggtggtgctgttctgggaggttatagaaca
ctggcttgtggggtaggggtgggctttgaagatgataagtggactctgct
tgtggtcttcttagcttctgattcctggaggtgagcagcaacagcctcac
attcctgcctcggacctttccagccatgatggactctagtctctgaaact
gtaagccaaagtaaacctccttcccgtaagttgcttctgtcgggaaatca
agcatcatgggtggttctgttacaagcagtgaacccacaccccttccccc
acttcatgcgggggtgcacacaccattaaaggcagaggggatggagcctc
agctgactcgtgtttggaagcactgggtcttgcttttttttatgggagtt
ctccaacaggaaagggaagggaagacgtttcatacaaggttccctaaggg
gaaagtgatggaaagaccaaagtctatcacagcacaacgcgagtgtaaga
gcagaaagtcatccaactagaggcttgtctggcggctccttgagagaaag
cttggttggtcaccctgtgcaagctgacctccttgtgtaatggacgtggg
acgtgaaacactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42257854_42258932
seq2: B6Ng01-026E11.b_44_1110

seq1  GAATTCACCAGAGGTAGCTGGCAGCTTGCTGTTGACCCTAACACAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGAGGTAGCTGGCAGCTTGCTGTTGACCCTAACACAGAGAT  50

seq1  GGCCAGAGTCTCAAGTAGGACCACAGTCAGCAGAACAGAAGTTACATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGTCTCAAGTAGGACCACAGTCAGCAGAACAGAAGTTACATAAG  100

seq1  CAAGCAACAAGCATCGCCTTTCCCCCCTCAGAGGTGGGGTACATAGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACAAGCATCGCCTTTCCCCCCTCAGAGGTGGGGTACATAGGCTT  150

seq1  TACCTCATGCCAGTCTTGGAGCTTGTTGTCAGAAAGATCGAGTTCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATGCCAGTCTTGGAGCTTGTTGTCAGAAAGATCGAGTTCTGACA  200

seq1  CGTGAGCACAGAAGGCTGCGATTTCTCTTTCATCTCCCGCGCAGGTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGCACAGAAGGCTGCGATTTCTCTTTCATCTCCCGCGCAGGTAATG  250

seq1  CCGCAGCTGTTCAACACGAGCACGCTCGGGAGGTTGAGGCGATCTGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCTGTTCAACACGAGCACGCTCGGGAGGTTGAGGCGATCTGAATT  300

seq1  ATTGGAAACACAAAACACTTGCTCCACTCAGCCTCGCTCCTGTCTGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAACACAAAACACTTGCTCCACTCAGCCTCGCTCCTGTCTGTGTA  350

seq1  CATTCGCCCCAGGCATCATAAGGAAACAAACCCTATCTCCTGCATTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGCCCCAGGCATCATAAGGAAACAAACCCTATCTCCTGCATTCCAA  400

seq1  GAGGGTCTTGGGACCTTGAATCCTAAAGAGAGTTAAATCTGGGCCAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTTGGGACCTTGAATCCTAAAGAGAGTTAAATCTGGGCCAGGAA  450

seq1  GAGCTCAGAGGTGCTGGCCTCCCTCCAGTCTCCTGGGCTCTGCTCCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGAGGTGCTGGCCTCCCTCCAGTCTCCTGGGCTCTGCTCCCCGC  500

seq1  TGCCTGTCGCCAGCCACCAGCAACGCGTCACGATCTTCTTGCCTACACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCGCCAGCCACCAGCAACGCGTCACGATCTTCTTGCCTACACCT  550

seq1  CAGTCCCAGCTAACTTGTATCTTAGACCACCATCGACTGACCTCAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAGCTAACTTGTATCTTAGACCACCATCGACTGACCTCAATTCT  600

seq1  GTAGTTCTGAAAAGCATTCTGTCCCACTCTTTTCTCTCTAGTGCTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTGAAAAGCATTCTGTCCCACTCTTTTCTCTCTAGTGCTCCTTT  650

seq1  TAAATGTTATCTCAAACTACTAATGAATTATCTGCTAAGCCACCTCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTATCTCAAACTACTAATGAATTATCTGCTAAGCCACCTCTGTC  700

seq1  AAGTCGGTGTGTTCCAAACATCTTCCTCACTTATGGGAAGCCAATCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGGTGTGTTCCAAACATCTTCCTCACTTATGGGAAGCCAATCAAAA  750

seq1  TGCTGTTTCTTTTGTTCCTGCGTATCAATTATTCCCATTTTACACTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTCTTTTGTTCCTGCGTATCAATTATTCCCATTTTACACTCATG  800

seq1  TATTAACAGATTTTCCCTTATGAAAGTATATCTTTCTTTAAAAATAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAGATTTTCCCTTATGAAAGTATATCTTTCTTTAAAAATAAATT  850

seq1  CCTAATGGGAGAAAAGGCTTCAGAGTCTGAAATATGCAAAGATCAGGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTAATGGGAGAAAAGGCTTCAGAGTCTGAAATATGCAAAGATCA-GTCA  899

seq1  GCAGAAGACCAAGTCTGACCATGCCTGCTCTAAGGTGCGTAAGGTGTATC  950
      |||| ||||||| |||||||||||||||||||| |||||||| |||||||
seq2  GCAG-AGACCAA-TCTGACCATGCCTGCTCTAA-GTGCGTAA-GTGTATC  945

seq1  TTATGTATCATAACCCCGC-TCTCACTATCCTACTGAAAGGGAGAAAGGT  999
      ||||||| ||||||||||| ||||||||||||||||||| ||||||| ||
seq2  TTATGTA-CATAACCCCGCTTCTCACTATCCTACTGAAA-GGAGAAA-GT  992

seq1  GACAACGCAACCACTTTTTCACCCACTTGGAAAAAAAACAAGGCCACCTG  1049
      |||||||| |||||||||||| ||||||||||||||| || |  ||| ||
seq2  GACAACGC-ACCACTTTTTCA-CCACTTGGAAAAAAACCATG--CACTTG  1038

seq1  AAGGTCATGATTTCTAACTT-GAGACCTCGA  1079
      |||||| ||| ||||||||| |||| |||||
seq2  AAGGTC-TGAATTCTAACTTAGAGA-CTCGA  1067

seq1: chr9_42390410_42391023
seq2: B6Ng01-026E11.g_68_681 (reverse)

seq1  ACAGTGTTTCACGTCCCACGTCCATTACACAAGGAGGTCAGCTTGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTTCACGTCCCACGTCCATTACACAAGGAGGTCAGCTTGCACAG  50

seq1  GGTGACCAACCAAGCTTTCTCTCAAGGAGCCGCCAGACAAGCCTCTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCAACCAAGCTTTCTCTCAAGGAGCCGCCAGACAAGCCTCTAGTT  100

seq1  GGATGACTTTCTGCTCTTACACTCGCGTTGTGCTGTGATAGACTTTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTTTCTGCTCTTACACTCGCGTTGTGCTGTGATAGACTTTGGTC  150

seq1  TTTCCATCACTTTCCCCTTAGGGAACCTTGTATGAAACGTCTTCCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCACTTTCCCCTTAGGGAACCTTGTATGAAACGTCTTCCCTTCC  200

seq1  CTTTCCTGTTGGAGAACTCCCATAAAAAAAAGCAAGACCCAGTGCTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGTTGGAGAACTCCCATAAAAAAAAGCAAGACCCAGTGCTTCCA  250

seq1  AACACGAGTCAGCTGAGGCTCCATCCCCTCTGCCTTTAATGGTGTGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGAGTCAGCTGAGGCTCCATCCCCTCTGCCTTTAATGGTGTGTGCA  300

seq1  CCCCCGCATGAAGTGGGGGAAGGGGTGTGGGTTCACTGCTTGTAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCATGAAGTGGGGGAAGGGGTGTGGGTTCACTGCTTGTAACAGAA  350

seq1  CCACCCATGATGCTTGATTTCCCGACAGAAGCAACTTACGGGAAGGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATGATGCTTGATTTCCCGACAGAAGCAACTTACGGGAAGGAGGT  400

seq1  TTACTTTGGCTTACAGTTTCAGAGACTAGAGTCCATCATGGCTGGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGGCTTACAGTTTCAGAGACTAGAGTCCATCATGGCTGGAAAGG  450

seq1  TCCGAGGCAGGAATGTGAGGCTGTTGCTGCTCACCTCCAGGAATCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGGCAGGAATGTGAGGCTGTTGCTGCTCACCTCCAGGAATCAGAAG  500

seq1  CTAAGAAGACCACAAGCAGAGTCCACTTATCATCTTCAAAGCCCACCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGACCACAAGCAGAGTCCACTTATCATCTTCAAAGCCCACCCCT  550

seq1  ACCCCACAAGCCAGTGTTCTATAACCTCCCAGAACAGCACCACCAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACAAGCCAGTGTTCTATAACCTCCCAGAACAGCACCACCAGCTGG  600

seq1  GGAATCAAGAATTC  614
      ||||||||||||||
seq2  GGAATCAAGAATTC  614