BAC Information

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BAC

Clone NameB6Ng01-026J05
Chromosome9 (Build37)
Map Location 121,395,331 - 121,555,635
singlet/doubletdoublet
Overlap geneCck, Lyzl4, Vipr1
Upstream geneEif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1
Downstream geneLOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026J05.bB6Ng01-026J05.g
ACCDH857580DH857581
length925226
definitionDH857580|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J05, 5' end.DH857581|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,554,708 - 121,555,635)(121,395,331 - 121,395,556)
sequence
gaattcactccagcagtgccggaatgcaggcaggagccaccagtcacagc
tttatcgtaatattctttctactttcttattttcatgttgggaatccaaa
ttggggaggcgggcaaagtctgggagactgagagaagggtgaggctcatg
tctgtctccagtatccagccctcttctacaaactaagaggccaagtggag
ggttgataatgccaggaaggtggccgggtagagggtggctgggtagaggc
cctgggcaggtgatgtgacaccagctggatgccaccaaagcgtctctcac
ttggagatgtcccatcaactactctcctcagagaggccttgtcacaccct
gaatacacttcatgacacctcacttactctgtggatcttgccttccctag
ctagataaaaggtccaagcttgggaccaaggagcagagatgacctgtcac
atgagccacccaacatattcactattgtctcctccttcagagtccatgaa
gatcctgtctggacacccaaccctgtctcacttgagactggagaagatca
ggcctcagttaaaaagtggggctggttccagcccaaccctgccttcccaa
ttctccctcacactgggccgagagttcgagtgtccctccaaagatgagga
aaccgggtccttctatggatattaaagatgtttctttcctaagccaacta
gccatggctgtggggaggggcagtgtccaaggctgttgtcccaagctgtg
actcccacgaaagctacagtagcctcagaggaggctagatctccaggctc
caggatggggaggcaacaaatctagagcgagttcggtctcttcaagtgct
tccgggagtcctgggagacataatgaggtcatctctctgtacaaaggtat
tctggctcagtagccaccatgtttc
cttagcttattattttgggggtgcacacctggtacagtgtgtatgtggag
aacagctcatgggaatcaattctctctgtccacctgtgggcccctagata
tggaatccatgccatcaggtttagtggcaagcaaccttacttcctgagca
atctcactggctccctgtctgggttttgactggagaaaaagaactgaggc
tgagtgtgtgagggggaggggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121554708_121555635
seq2: B6Ng01-026J05.b_46_970 (reverse)

seq1  GAAACATGGTGGCTACTGAGCCAGAATACCTTCTGGTACAGAGAGATGAC  50
      |||||||||||||||||||||||||||||||  | |||||||||||||||
seq2  GAAACATGGTGGCTACTGAGCCAGAATACCT--TTGTACAGAGAGATGAC  48

seq1  CTCAGTTATGTCTGCCCAGGACTCCCGG-AGCACTCTGAGAGACCGAACT  99
      |||| |||||||| |||||||||||||| ||||||   ||||||||||||
seq2  CTCA-TTATGTCT-CCCAGGACTCCCGGAAGCACTTGAAGAGACCGAACT  96

seq1  CGCTCTAGATTTGTTGCCTCCCCATCCTGGAGCCTGGAGATCTAGCCTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTAGATTTGTTGCCTCCCCATCCTGGAGCCTGGAGATCTAGCCTCC  146

seq1  TCTGAGGCTACTGTAGCTTTCGTGGGAGTCACAGCTTGGGACAACAGCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCTACTGTAGCTTTCGTGGGAGTCACAGCTTGGGACAACAGCCT  196

seq1  TGGACACTGCCCCTCCCCACAGCCATGGCTAGTTGGCTTAGGAAAGAAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTGCCCCTCCCCACAGCCATGGCTAGTTGGCTTAGGAAAGAAAC  246

seq1  ATCTTTAATATCCATAGAAGGACCCGGTTTCCTCATCTTTGGAGGGACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATATCCATAGAAGGACCCGGTTTCCTCATCTTTGGAGGGACAC  296

seq1  TCGAACTCTCGGCCCAGTGTGAGGGAGAATTGGGAAGGCAGGGTTGGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCTCGGCCCAGTGTGAGGGAGAATTGGGAAGGCAGGGTTGGGCT  346

seq1  GGAACCAGCCCCACTTTTTAACTGAGGCCTGATCTTCTCCAGTCTCAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGCCCCACTTTTTAACTGAGGCCTGATCTTCTCCAGTCTCAAGT  396

seq1  GAGACAGGGTTGGGTGTCCAGACAGGATCTTCATGGACTCTGAAGGAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTGGGTGTCCAGACAGGATCTTCATGGACTCTGAAGGAGGA  446

seq1  GACAATAGTGAATATGTTGGGTGGCTCATGTGACAGGTCATCTCTGCTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGTGAATATGTTGGGTGGCTCATGTGACAGGTCATCTCTGCTCC  496

seq1  TTGGTCCCAAGCTTGGACCTTTTATCTAGCTAGGGAAGGCAAGATCCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCAAGCTTGGACCTTTTATCTAGCTAGGGAAGGCAAGATCCACA  546

seq1  GAGTAAGTGAGGTGTCATGAAGTGTATTCAGGGTGTGACAAGGCCTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGTGAGGTGTCATGAAGTGTATTCAGGGTGTGACAAGGCCTCTCT  596

seq1  GAGGAGAGTAGTTGATGGGACATCTCCAAGTGAGAGACGCTTTGGTGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGTAGTTGATGGGACATCTCCAAGTGAGAGACGCTTTGGTGGCA  646

seq1  TCCAGCTGGTGTCACATCACCTGCCCAGGGCCTCTACCCAGCCACCCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGGTGTCACATCACCTGCCCAGGGCCTCTACCCAGCCACCCTCT  696

seq1  ACCCGGCCACCTTCCTGGCATTATCAACCCTCCACTTGGCCTCTTAGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGCCACCTTCCTGGCATTATCAACCCTCCACTTGGCCTCTTAGTTT  746

seq1  GTAGAAGAGGGCTGGATACTGGAGACAGACATGAGCCTCACCCTTCTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGAGGGCTGGATACTGGAGACAGACATGAGCCTCACCCTTCTCTC  796

seq1  AGTCTCCCAGACTTTGCCCGCCTCCCCAATTTGGATTCCCAACATGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAGACTTTGCCCGCCTCCCCAATTTGGATTCCCAACATGAAAA  846

seq1  TAAGAAAGTAGAAAGAATATTACGATAAAGCTGTGACTGGTGGCTCCTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGTAGAAAGAATATTACGATAAAGCTGTGACTGGTGGCTCCTGC  896

seq1  CTGCATTCCGGCACTGCTGGAGTGAATTC  928
      |||||||||||||||||||||||||||||
seq2  CTGCATTCCGGCACTGCTGGAGTGAATTC  925

seq1: chr9_121395331_121395556
seq2: B6Ng01-026J05.g_74_299

seq1  CTTAGCTTATTATTTTGGGGGTGCACACCTGGTACAGTGTGTATGTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTATTATTTTGGGGGTGCACACCTGGTACAGTGTGTATGTGGAG  50

seq1  AACAGCTCATGGGAATCAATTCTCTCTGTCCACCTGTGGGCCCCTAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCATGGGAATCAATTCTCTCTGTCCACCTGTGGGCCCCTAGATA  100

seq1  TGGAATCCATGCCATCAGGTTTAGTGGCAAGCAACCTTACTTCCTGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCATGCCATCAGGTTTAGTGGCAAGCAACCTTACTTCCTGAGCA  150

seq1  ATCTCACTGGCTCCCTGTCTGGGTTTTGACTGGAGAAAAAGAACTGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTGGCTCCCTGTCTGGGTTTTGACTGGAGAAAAAGAACTGAGGC  200

seq1  TGAGTGTGTGAGGGGGAGGGGTGGGT  226
      ||||||||||||||||||||||||||
seq2  TGAGTGTGTGAGGGGGAGGGGTGGGT  226