BAC Information

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BAC

Clone NameB6Ng01-027D02
Chromosome9 (Build37)
Map Location 86,892,624 - 87,020,025
singlet/doubletdoublet
Overlap geneC030002E08Rik, Cyb5r4
Upstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91
Downstream geneLOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731, LOC100039580
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D02.bB6Ng01-027D02.g
ACCDH858008DH858009
length877887
definitionDH858008|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D02, 5' end.DH858009|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,892,624 - 86,893,500)(87,019,109 - 87,020,025)
sequence
gaattcttggaggtcagaattcctagctctgctttcccgtttcccagaag
ctgaaacctgagggtgcagatctgcctgacctcagtccatcgtactggtg
agtggataatgccgagagacatgcagtatatacctctgaaggtatacaca
tgacagcataaaatccagtccccatgtgtgcttctcatctttgcagttcc
tgtgacacaatgttctgccgaaagaaacctaaggaaggaaaagcttgttt
tggttcacagtttgagggtgcagtccaccctagtgaagaagtcaccatag
caggaggaggagcctggcgggaaccacagcaaaaaagcaagaaccatgaa
taataatgctgaaggataccgcccagtataccctctcaaggcatatcctg
ctggcagatatgatgtcttccaacacaattaacttaattaagataatccc
aagagacatgtccagaaacacatctcccaggtgattctagattctgccaa
gaggataattagcactaaccatcacactacccaggacgacatgaatgtgg
ttgctctgggagatcagggactggtggaggtacaggtggtttgtgagcta
cctggtgtgggtgtggggaactgaactttgggttccctaaaagaacagta
tatgctcttaactgctgagctatctttcttagtctctagatttgtgaaag
atcccctagcagtggctgggtttgaggtataggataactacaggtcttaa
atcttgatactgtagtgagaaacgaccttttgacaattggtttcgaatag
cagtgccctcactgtagcactttgaccttttggagagttgttatccttgc
tcatctttttctatttatgcttttcag
gaattccttgccaggtttacattagtccctgcacctgccagtgattcttc
atctgtgtttttatattagtgttctaaggaaaggtttaggtaaaatggaa
cttaacttattaaatgtagagaatgaacaaggatatgaagctattcatga
aatataaaaagtagccaaagaattctcaaactctattagtcagattttgc
ttccctttgacaaaatacaaaatacaaaattccctggcaaaaacaactta
aagagaaaagggtttgtttgggctcgtgttgtcagagggctcaggccagc
acccctgactccactggtcccgattctgcattgagaggaagtgcagtggt
gagacccgaggcagatgttatttatctcagggcagacagatcactagaaa
gggagcagggaccagaaaatacttataaccttaaagagcatccctctccc
caatgacctattgtcctattgacctatgatcaacccccattttttaaagt
ttctaccacttatcaaaagtggacacccagaccccgaaatgacattctgg
actcttctcaggtgggactccagacagagtgaactgaagaattgcaggca
gataaacaaaaggctaaaatcagcatttctcagaaacttgtggagtaggt
ttctgtttgtcacgtcccctgacagccgactatctcctgtacatacatgg
ggcatctcgtttccctatgagcacataccagagccccaacactagctgct
agcctcttctggccagtttaactccccagtatctactctaactccaaggc
tgctctgcttgcagacttctgcccaggcagctacctggtctctttaaagc
tggcaaggctctctctctctctcttctctctctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_86892624_86893500
seq2: B6Ng01-027D02.b_45_921

seq1  GAATTCTTGGAGGTCAGAATTCCTAGCTCTGCTTTCCCGTTTCCCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGGTCAGAATTCCTAGCTCTGCTTTCCCGTTTCCCAGAAG  50

seq1  CTGAAACCTGAGGGTGCAGATCTGCCTGACCTCAGTCCATCGTACTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTGAGGGTGCAGATCTGCCTGACCTCAGTCCATCGTACTGGTG  100

seq1  AGTGGATAATGCCGAGAGACATGCAGTATATACCTCTGAAGGTATACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATAATGCCGAGAGACATGCAGTATATACCTCTGAAGGTATACACA  150

seq1  TGACAGCATAAAATCCAGTCCCCATGTGTGCTTCTCATCTTTGCAGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCATAAAATCCAGTCCCCATGTGTGCTTCTCATCTTTGCAGTTCC  200

seq1  TGTGACACAATGTTCTGCCGAAAGAAACCTAAGGAAGGAAAAGCTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACAATGTTCTGCCGAAAGAAACCTAAGGAAGGAAAAGCTTGTTT  250

seq1  TGGTTCACAGTTTGAGGGTGCAGTCCACCCTAGTGAAGAAGTCACCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACAGTTTGAGGGTGCAGTCCACCCTAGTGAAGAAGTCACCATAG  300

seq1  CAGGAGGAGGAGCCTGGCGGGAACCACAGCAAAAAAGCAAGAACCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGGAGCCTGGCGGGAACCACAGCAAAAAAGCAAGAACCATGAA  350

seq1  TAATAATGCTGAAGGATACCGCCCAGTATACCCTCTCAAGGCATATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGCTGAAGGATACCGCCCAGTATACCCTCTCAAGGCATATCCTG  400

seq1  CTGGCAGATATGATGTCTTCCAACACAATTAACTTAATTAAGATAATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGATATGATGTCTTCCAACACAATTAACTTAATTAAGATAATCCC  450

seq1  AAGAGACATGTCCAGAAACACATCTCCCAGGTGATTCTAGATTCTGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATGTCCAGAAACACATCTCCCAGGTGATTCTAGATTCTGCCAA  500

seq1  GAGGATAATTAGCACTAACCATCACACTACCCAGGACGACATGAATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAATTAGCACTAACCATCACACTACCCAGGACGACATGAATGTGG  550

seq1  TTGCTCTGGGAGATCAGGGACTGGTGGAGGTACAGGTGG-TTGTGAGCTA  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGCTCTGGGAGATCAGGGACTGGTGGAGGTACAGGTGGTTTGTGAGCTA  600

seq1  CCTGGTGTGGGTGTGGGGAACTGAAC-TTGGGTTCCCTAAAAGAACAGTA  648
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTGGTGTGGGTGTGGGGAACTGAACTTTGGGTTCCCTAAAAGAACAGTA  650

seq1  TATGCTCTTAACTGCTGAGCTATCTTTCTTAGTCTCTAGATTTG-GTAAG  697
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  TATGCTCTTAACTGCTGAGCTATCTTTCTTAGTCTCTAGATTTGTGAAAG  700

seq1  ATCCCCTAGCAGTGGCTGGG-TTGAGGTATAGGATAACTACAGGTCTTAA  746
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCCCCTAGCAGTGGCTGGGTTTGAGGTATAGGATAACTACAGGTCTTAA  750

seq1  ATCTTGATACTGTAGTGAGAACGGACCATCTGACAATGGGTCTCGAATAG  796
      |||||||||||||||||||||  |||| | ||||||| ||| ||||||||
seq2  ATCTTGATACTGTAGTGAGAAACGACCTTTTGACAATTGGTTTCGAATAG  800

seq1  CAGTGCCCTCCACTGCAGCACTCTGACCTTTTGCAGAGATTGTTATCCTT  846
      ||||||||| ||||| |||||| |||||||||| |||| |||||||||||
seq2  CAGTGCCCT-CACTGTAGCACTTTGACCTTTTGGAGAG-TTGTTATCCTT  848

seq1  GCTCCATCTTTCTCTATTTAATGCTTTTCAG  877
      ||| ||||||| ||||||| |||||||||||
seq2  GCT-CATCTTTTTCTATTT-ATGCTTTTCAG  877

seq1: chr9_87019109_87020025
seq2: B6Ng01-027D02.g_69_955 (reverse)

seq1  TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
                                     |||||||||||| ||||||
seq2  ------------------------------TGAGAGAGAGAGA-AGAGAG  19

seq1  AGAGAGAGAGCCTTGCCAGCTTTAAAGAGACCAGGTAGCTGCCTGGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGCCTTGCCAGCTTTAAAGAGACCAGGTAGCTGCCTGGGCAG  69

seq1  AAGTCTGCAAGCAGAGCAGCCTTGGAGTTAGAGTAGATACTGGGGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCAAGCAGAGCAGCCTTGGAGTTAGAGTAGATACTGGGGAGTTA  119

seq1  ACCTGGCCAGAAGAGGCTAGCAGCTAGTGTTGGGGCTCTGGTATGTGCTC  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCCAGAAGAGGCTAGCAGCTAGTGTTGGGGCTCTGGTATGTGCTC  169

seq1  ATAGGG-AACGAGATGCCCCATGTATGTACAGGAGATAGTCGGCTGTCAG  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAACGAGATGCCCCATGTATGTACAGGAGATAGTCGGCTGTCAG  219

seq1  GGGACGTGACAAACAGAAACCTACTCCACAAGTTTCTGAGAAATGCTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGTGACAAACAGAAACCTACTCCACAAGTTTCTGAGAAATGCTGAT  269

seq1  TTTAGCCTTTTGTTTATCTGCCTGCAATTCTTCAGTTCACTCTGTCTGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTTTTGTTTATCTGCCTGCAATTCTTCAGTTCACTCTGTCTGGA  319

seq1  GTCCCACCTGAGAAGAGTCCAGAATGTCATTTCGGGGTCTGGGTGTCCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCTGAGAAGAGTCCAGAATGTCATTTCGGGGTCTGGGTGTCCAC  369

seq1  TTTTGATAAGTGGTAGAAACTTTAAAAAATGGGGGTTGATCATAGGTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAAGTGGTAGAAACTTTAAAAAATGGGGGTTGATCATAGGTCAA  419

seq1  TAGGACAATAGGTCATTGGGGAGAGGGATGCTCTTTAAGGTTATAAGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAATAGGTCATTGGGGAGAGGGATGCTCTTTAAGGTTATAAGTAT  469

seq1  TTTCTGGTCCCTGCTCCCTTTCTAGTGATCTGTCTGCCCTGAGATAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTCCCTGCTCCCTTTCTAGTGATCTGTCTGCCCTGAGATAAATA  519

seq1  ACATCTGCCTCGGGTCTCACCACTGCACTTCCTCTCAATGCAGAATCGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCCTCGGGTCTCACCACTGCACTTCCTCTCAATGCAGAATCGGG  569

seq1  ACCAGTGGAGTCAGGGGTGCTGGCCTGAGCCCTCTGACAACACGAGCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGAGTCAGGGGTGCTGGCCTGAGCCCTCTGACAACACGAGCCCA  619

seq1  AACAAACCCTTTTCTCTTTAAGTTGTTTTTGCCAGGGAATTTTGTATTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCCTTTTCTCTTTAAGTTGTTTTTGCCAGGGAATTTTGTATTTT  669

seq1  GTATTTTGTCAAAGGGAAGCAAAATCTGACTAATAGAGTTTGAGAATTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTCAAAGGGAAGCAAAATCTGACTAATAGAGTTTGAGAATTCT  719

seq1  TTGGCTACTTTTTATATTTCATGAATAGCTTCATATCCTTGTTCATTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACTTTTTATATTTCATGAATAGCTTCATATCCTTGTTCATTCTC  769

seq1  TACATTTAATAAGTTAAGTTCCATTTTACCTAAACCTTTCCTTAGAACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAATAAGTTAAGTTCCATTTTACCTAAACCTTTCCTTAGAACAC  819

seq1  TAATATAAAAACACAGATGAAGAATCACTGGCAGGTGCAGGGACTAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAAAACACAGATGAAGAATCACTGGCAGGTGCAGGGACTAATGT  869

seq1  AAACCTGGCAAGGAATTC  917
      ||||||||||||||||||
seq2  AAACCTGGCAAGGAATTC  887