BAC Information

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BAC

Clone NameB6Ng01-027L17
Chromosome9 (Build37)
Map Location 79,449,566 - 79,615,763
singlet/doubletdoublet
Overlap geneCol12a1, Cox7a2
Upstream geneCd109, LOC384957, EG666456, LOC436085, LOC235509, LOC666479
Downstream geneTmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L17.bB6Ng01-027L17.g
ACCDH858398DH858399
length1,001987
definitionDH858398|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L17, 5' end.DH858399|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,449,566 - 79,450,626)(79,614,764 - 79,615,763)
sequence
gaattctttcacttgtctgcattttgtttgctattatatgtagattggat
tgcagaaataattttcatatatattttcagcattctataacactatttca
tttttttagtctctctgttcctttaggtaaaaataataaataaaaagaaa
ggaaagaaaaaaaaaaaagaaacctaatgaattggtagcattcatttaac
tccccaaagagttgtagagaagttaatggtgtggtttggcaaatccagaa
atacaggaggggaaaatggtcacttaaatcctaattatggaaagtgtttt
gtgctttagaagactgtcgcatactcaaaatacagaaccgaaaatgttgg
catctccacgagatccctatctcgacctgccttcaatcctagggctcttt
atttctgggaaactggagtccttatgatggcagcaacatacctggatagc
cttgcccattgtacgggatgctggcacactgggatgaatcacaatatcca
ggaggacctggagggcctcggatacctgagtttcctggacgaccaggggg
accaggagggcctcttgaacctgtagaccctggtggacccgttcgggatt
cgccttgtggacctagtgtgaagcaaaataataataataataataataat
aataataatatatttccatttcttgtcaaaaacacctgaggcagattcca
atactcatgggtaaagtggtgctttcatatgattgacataaatgtaaaga
tttcgccacagggcttgcattaagtgtaaagatacagaaaacttcagaaa
aagaagaaaaacatggagcagcaagatggcttggaaagtaaaggtgcttg
ttgccaagcctgacatcagagttaagtttcaggaccacaaagtggaagaa
aagaacaactctcacaattgttctctgactcacatgcacacatggactgt
gtacacaatacccctcacatgctccccggacaagatagtagatgatagat
a
gaattcactctgctctttcagcaccaccatccttctgttgaattaataat
acacatttagaaaaattaatttctaagacttctttcatttctattgtttg
tagaatattcacagatggagcctacttcctggtgaatatgttttgacgtg
tatgtgtaaatgctctgggtgtatatatgtgtgctcacttgtagatacaa
cattctgttcctgtcctccctcgtctactctggcttttccagtctttcca
ccctgacttccttggtgaccccattgttgggggtgatgcagatgtccagt
ttgttttctttttttaatgtatgagtgatgtgctgcatatatatctgcct
gcctgaagagggcatcagatccccctagatatggttgtgagccaccatgt
gattggttgctgggaattaaactcatgacctctggaagagcagcaagtgc
tcttaactgctgagccatctcaccagccccagatgtccaattctttttgc
ataagcattctgttgacatttgctctctgcatcagtcagttgtgagttta
tgtgtaaactattcactttgtgcagaaacttctctaacagcactggtcta
tgggtaatctaacaggaatttggaggatagtttgattcagtgtccttttt
agcaggaaagagtagtagatcactccaggttcctgtgagctccttaacca
gggcatttgagccagaacacagtttggatgagaagaggaatgtctagaga
tctgaatttttgttgggtacgcctttcaactggccattttcaaccctgag
tgtatcctttgctgtaactttgctcatatctaagcttctgagagctgtga
ccgacagacatgctttgtatgatctgtcttagagccgtcagattacagct
tcctctgtccacttctgtcccgtacatctggttgtttccccaaattttta
gaatgtgttattttctgtcttactattggggcgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79449566_79450626
seq2: B6Ng01-027L17.b_48_1048

seq1  GAATTCTTTCACTTGTCTGCATTTTGTTTGCTATTATATGTAGATTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTTGTCTGCATTTTGTTTGCTATTATATGTAGATTGGAT  50

seq1  TGCAGAAATAATTTTCATATATATTTTCAGCATTCTATAACACTATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATAATTTTCATATATATTTTCAGCATTCTATAACACTATTTCA  100

seq1  TTTTTTTAGTCTCTCTGTTCCTTTAGGTAAAAATAATAAATAAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGTCTCTCTGTTCCTTTAGGTAAAAATAATAAATAAAAAGAAA  150

seq1  GGAAAGAAAAAAAAAAAAGAAACCTAATGAATTGGTAGCATTCATTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAAAAAAAAAAGAAACCTAATGAATTGGTAGCATTCATTTAAC  200

seq1  TCCCCAAAGAGTTGTAGAGAAGTTAATGGTGTGGTTTGGCAAATCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAGAGTTGTAGAGAAGTTAATGGTGTGGTTTGGCAAATCCAGAA  250

seq1  ATACAGGAGGGGAAAATGGTCACTTAAATCCTAATTATGGAAAGTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAGGGGAAAATGGTCACTTAAATCCTAATTATGGAAAGTGTTTT  300

seq1  GTGCTTTAGAAGACTGTCGCATACTCAAAATACAGAACCGAAAATGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAGAAGACTGTCGCATACTCAAAATACAGAACCGAAAATGTTGG  350

seq1  CATCTCCACGAGATCCCTATCTCGACCTGCCTTCAATCCTAGGGCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCACGAGATCCCTATCTCGACCTGCCTTCAATCCTAGGGCTCTTT  400

seq1  ATTTCTGGGAAACTGGAGTCCTTATGATGGCAGCAACATACCTGGATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGAAACTGGAGTCCTTATGATGGCAGCAACATACCTGGATAGC  450

seq1  CTTGCCCATTGTACGGGATGCTGGCACACTGGGATGAATCACAATATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCATTGTACGGGATGCTGGCACACTGGGATGAATCACAATATCCA  500

seq1  GGAGGACCTGGAGGGCCTCGGATACCTGAGTTTCCTGGACGACCAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACCTGGAGGGCCTCGGATACCTGAGTTTCCTGGACGACCAGGGGG  550

seq1  ACCAGGAGGGCCTCTTGAACCTGTAGACCCTGGTGGACCCGTTCGGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGGGCCTCTTGAACCTGTAGACCCTGGTGGACCCGTTCGGGATT  600

seq1  CGCCTTGTGGACCTAGTGTGAAGCAAAATAATAATAATAATAATAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTGTGGACCTAGTGTGAAGCAAAATAATAATAATAATAATAATAAT  650

seq1  AATAATAATATATTTCCATTTCTTGTCAAAAACACCTGAGGCAGATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATATATTTCCATTTCTTGTCAAAAACACCTGAGGCAGATTCCA  700

seq1  ATACTCATGGGTAAAGTGGTGC-TTCATATGATTGACATAAATGTAAAGA  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATACTCATGGGTAAAGTGGTGCTTTCATATGATTGACATAAATGTAAAGA  750

seq1  TTTCGCCACAGGGCTTGCATTAAGTGTAAAGATACAG-AAACTTCAGAAA  798
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCGCCACAGGGCTTGCATTAAGTGTAAAGATACAGAAAACTTCAGAAA  800

seq1  AAGAAGAAAAACATGGAGCAGCAAGATGGCTTGGAAAGTAAAGGTGCTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAACATGGAGCAGCAAGATGGCTTGGAAAGTAAAGGTGCTTG  850

seq1  CTGCCAAGCCTGACAATCAGAGTTAAGTTCCCAGGACCCACAAAGTGGAA  898
       ||||||||||||| ||||||||||||||  ||||| |||||||||||||
seq2  TTGCCAAGCCTGAC-ATCAGAGTTAAGTT-TCAGGA-CCACAAAGTGGAA  897

seq1  GAAAAGAACCAACTCCCACAAATTGTTCTCTGACCTCAACATGCACACCA  948
      |||||||| |||||| ||| ||||||||||||| ||| ||||||||| ||
seq2  GAAAAGAA-CAACTCTCAC-AATTGTTCTCTGA-CTC-ACATGCACA-CA  942

seq1  TGGACATGTGTACCACACATACACACACACATGCACACACAGACAAGATA  998
      ||||| |||||| |||| |||| | | ||||||| | | | |||||||||
seq2  TGGAC-TGTGTA-CACA-ATAC-CCCTCACATGCTC-CCCGGACAAGATA  987

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  1048
      | ||||| ||||||||                                  
seq2  G-TAGAT-GATAGATA----------------------------------  1001

seq1  TAGATGATAGATA  1061
                   
seq2  -------------  1001

seq1: chr9_79614764_79615763
seq2: B6Ng01-027L17.g_68_1054 (reverse)

seq1  TTTAAGCCCCAAATAGATAAGACAGGAAAATAAGCAATTCTAACAAATTT  50
      |||| ||||| ||||| ||||||| ||||||||   ||||||| ||||||
seq2  TTTACGCCCC-AATAG-TAAGACA-GAAAATAACACATTCTAA-AAATTT  46

seq1  GTGGAAAACAACCAGATGTACCGGAACAGAAGTGGACAGAGGAAGCTGTA  100
      | || ||||||||||||||| ||| |||||||||||||||||||||||||
seq2  G-GGGAAACAACCAGATGTA-CGGGACAGAAGTGGACAGAGGAAGCTGTA  94

seq1  ATCTGAACGCGCTCTAAGACAGAATCATTACAAAGCATGTCTGTCGGTCA  150
      ||||| ||| |||||||||||| |||| ||||||||||||||||||||||
seq2  ATCTG-ACG-GCTCTAAGACAG-ATCA-TACAAAGCATGTCTGTCGGTCA  140

seq1  CAGGCTCTCAGAAGCTTAGATATGGAGCAAAGGTTACAGCAAAGGATACA  200
      || |||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CA-GCTCTCAGAAGCTTAGATAT-GAGCAAA-GTTACAGCAAAGGATACA  187

seq1  CTCAGGGTTGAAAATGGCCAGTTGAAAGGCGTACCCAACAAAAAGTTCAG  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCAGGGTTGAAAATGGCCAGTTGAAAGGCGTACCCAACAAAAA-TTCAG  236

seq1  ATCTCTAGACATTCCTCTTCTCATCCAAACTGTGTTCTGGCTCAAATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAGACATTCCTCTTCTCATCCAAACTGTGTTCTGGCTCAAATGCC  286

seq1  CTGGTTAAGGAGCTCACAGGAACCTGGAGTGATCTACTACTCTTTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAGGAGCTCACAGGAACCTGGAGTGATCTACTACTCTTTCCTGC  336

seq1  T-AAAAGGACACTGAATCAAACTATCCTCCAAATTCCTGTTAGATTACCC  399
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGACACTGAATCAAACTATCCTCCAAATTCCTGTTAGATTACCC  386

seq1  ATAGACCAGTGCTGTTAGAGAAGTTTCTGCACAAAGTGAATAGTTTACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCAGTGCTGTTAGAGAAGTTTCTGCACAAAGTGAATAGTTTACAC  436

seq1  ATAAACTCACAACTGACTGATGCAGAGAGCAAATGTCAACAGAATGCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCACAACTGACTGATGCAGAGAGCAAATGTCAACAGAATGCTTA  486

seq1  TGCAAAAAGAATTGGACATCTGGGGCTGGTGAGATGGCTCAGCAGTTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAGAATTGGACATCTGGGGCTGGTGAGATGGCTCAGCAGTTAAG  536

seq1  AGCACTTGCTGCTCTTCCAGAGGTCATGAGTTTAATTCCCAGCAACCAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGCTGCTCTTCCAGAGGTCATGAGTTTAATTCCCAGCAACCAAT  586

seq1  CACATGGTGGCTCACAACCATATCTAGGGGGATCTGATGCCCTCTTCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATATCTAGGGGGATCTGATGCCCTCTTCAGG  636

seq1  CAGGCAGATATATATGCAGCACATCACTCATACATTAAAAAAAGAAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATATATATGCAGCACATCACTCATACATTAAAAAAAGAAAACA  686

seq1  AACTGGACATCTGCATCACCCCCAACAATGGGGTCACCAAGGAAGTCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACATCTGCATCACCCCCAACAATGGGGTCACCAAGGAAGTCAGG  736

seq1  GTGGAAAGACTGGAAAAGCCAGAGTAGACGAGGGAGGACAGGAACAGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGACTGGAAAAGCCAGAGTAGACGAGGGAGGACAGGAACAGAAT  786

seq1  GTTGTATCTACAAGTGAGCACACATATATACACCCAGAGCATTTACACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATCTACAAGTGAGCACACATATATACACCCAGAGCATTTACACAT  836

seq1  ACACGTCAAAACATATTCACCAGGAAGTAGGCTCCATCTGTGAATATTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTCAAAACATATTCACCAGGAAGTAGGCTCCATCTGTGAATATTCT  886

seq1  ACAAACAATAGAAATGAAAGAAGTCTTAGAAATTAATTTTTCTAAATGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAATAGAAATGAAAGAAGTCTTAGAAATTAATTTTTCTAAATGTG  936

seq1  TATTATTAATTCAACAGAAGGATGGTGGTGCTGAAAGAGCAGACTGAATT  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATTATTAATTCAACAGAAGGATGGTGGTGCTGAAAGAGCAGAGTGAATT  986

seq1  C  1000
      |
seq2  C  987