BAC Information

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BAC

Clone NameB6Ng01-027M01
Chromosome9 (Build37)
Map Location 46,211,256 - 46,326,262
singlet/doubletdoublet
Overlap genenone
Upstream geneFxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Downstream geneEG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027M01.bB6Ng01-027M01.g
ACCDH858414DH858415
length822110
definitionDH858414|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M01, 5' end.DH858415|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,211,256 - 46,212,076)(46,326,153 - 46,326,262)
sequence
gaattctacttggtttgaaaaaatgaaactgtggtgtaattttgcaggtc
tcatctttcacctttgaccttttaagttcagattgtattcagtcagagaa
cctaaatactagcatcccaaaaccaatgacgttatttctttatgtatcct
acagaagccctggggttggtgtgccttcagtatggcagacatttgtttct
ttgtaataagggaaaggcagacaagaggtcatggaagccgcacagtatcc
ttagggtaccaggggcctcccgtagccctttggttatatatgcttctcat
ggtcattgtttagaagaaagggataagaaaggacagagggtagtccttgt
ttctttaagagcatgctctggaagttgagtaccacttacatcccatcgat
catgacttgggcataggctatgcctggaaggagatgtattctttattccc
agaagccgtgtatctaactgaaaatcattttctatggaaaaatggaagag
tgaatagcattgacaatttttccatctgtaccacactgtccccttatttt
tcaacttttctatagattatattttcattgaaaattttattgacgttgtt
atagatttctgtgcactgtaataaacaatatggagagatcctgtgtacac
tctaatgagtttcccctaatgggaacatttggcaaagctccagtgtaata
tcataattgagatattgatgttgatataacacaccaaacctattatctac
tcagattgttttttattttcttccttataccaatgattgtgtgtgtgtgt
gtgtgtgtgtgtgtgtggtgtg
caatggacaagcatttaaggtgacccaatttcacacaagaaaaggtggtt
ctagtctgtttagtataactacatactaaattggtaaattggtgaggtgg
gggtggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46211256_46212076
seq2: B6Ng01-027M01.b_37_858

seq1  GAATTCTACTTGGTTTGAAAAAATGAAACTGTGGTGTAATTTTGCAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTGGTTTGAAAAAATGAAACTGTGGTGTAATTTTGCAGGTC  50

seq1  TCATCTTTCACCTTTGACCTTTTAAGTTCAGATTGTATTCAGTCAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCACCTTTGACCTTTTAAGTTCAGATTGTATTCAGTCAGAGAA  100

seq1  CCTAAATACTAGCATCCCAAAACCAATGACGTTATTTCTTTATGTATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATACTAGCATCCCAAAACCAATGACGTTATTTCTTTATGTATCCT  150

seq1  ACAGAAGCCCTGGGGTTGGTGTGCCTTCAGTATGGCAGACATTTGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCCTGGGGTTGGTGTGCCTTCAGTATGGCAGACATTTGTTTCT  200

seq1  TTGTAATAAGGGAAAGGCAGACAAGAGGTCATGGAAGCCGCACAGTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAAGGGAAAGGCAGACAAGAGGTCATGGAAGCCGCACAGTATCC  250

seq1  TTAGGGTACCAGGGGCCTCCCGTAGCCCTTTGGTTATATATGCTTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTACCAGGGGCCTCCCGTAGCCCTTTGGTTATATATGCTTCTCAT  300

seq1  GGTCATTGTTTAGAAGAAAGGGATAAGAAAGGACAGAGGGTAGTCCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTGTTTAGAAGAAAGGGATAAGAAAGGACAGAGGGTAGTCCTTGT  350

seq1  TTCTTTAAGAGCATGCTCTGGAAGTTGAGTACCACTTACATCCCATCGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGAGCATGCTCTGGAAGTTGAGTACCACTTACATCCCATCGAT  400

seq1  CATGACTTGGGCATAGGCTATGCCTGGAAGGAGATGTATTCTTTATTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTGGGCATAGGCTATGCCTGGAAGGAGATGTATTCTTTATTCCC  450

seq1  AGAAGCCGTGTATCTAACTGAAAATCATTTTCTATGGAAAAATGGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCGTGTATCTAACTGAAAATCATTTTCTATGGAAAAATGGAAGAG  500

seq1  TGAATAGCATTGACAATTTTTCCATCTGTACCACACTGTCCCCTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCATTGACAATTTTTCCATCTGTACCACACTGTCCCCTTATTTT  550

seq1  TCAACTTTTCTATAGATTATATTTTCATTGAAAATTTTATTGACGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTTCTATAGATTATATTTTCATTGAAAATTTTATTGACGTTGTT  600

seq1  ATAGATTTCTGTGCACTGTAATAAACAATATGGAGAGATCCTGTGTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTCTGTGCACTGTAATAAACAATATGGAGAGATCCTGTGTACAC  650

seq1  TCTAATGAGTTTCCCCTAATGGGAACATTTGGCAAAGCTCCAGTGTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAGTTTCCCCTAATGGGAACATTTGGCAAAGCTCCAGTGTAATA  700

seq1  TCATAATTGAGATATTGATGTTGATATAACACACCAAACCTATTATCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTGAGATATTGATGTTGATATAACACACCAAACCTATTATCTAC  750

seq1  TCAGATTGTTTTT--ATTTCTTCCTTATACCAATGATTGTGTGTGTGTGT  798
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  TCAGATTGTTTTTTATTTTCTTCCTTATACCAATGATTGTGTGTGTGTGT  800

seq1  GTGTGTGTGTGTGTGTATGTGTG  821
      ||||||||||||||||  |||||
seq2  GTGTGTGTGTGTGTGT-GGTGTG  822

seq1: chr9_46326153_46326262
seq2: B6Ng01-027M01.g_74_183 (reverse)

seq1  TTCCCCACCCCCACCTCACCAATTTACCAATTTAGTATGTAGTTATACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCCCCACCTCACCAATTTACCAATTTAGTATGTAGTTATACTA  50

seq1  AACAGACTAGAACCACCTTTTCTTGTGTGAAATTGGGTCACCTTAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTAGAACCACCTTTTCTTGTGTGAAATTGGGTCACCTTAAATGC  100

seq1  TTGTCCATTG  110
      ||||||||||
seq2  TTGTCCATTG  110