BAC Information

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BAC

Clone NameB6Ng01-027P03
Chromosome9 (Build37)
Map Location 39,599,950 - 39,719,365
singlet/doubletdoublet
Overlap geneOlfr969, Olfr970, Olfr971, Olfr972, Olfr973
Upstream geneOlfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968
Downstream geneLOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027P03.bB6Ng01-027P03.g
ACCDH858554DH858555
length1,1071,056
definitionDH858554|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P03, 5' end.DH858555|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,718,244 - 39,719,365)(39,599,950 - 39,601,019)
sequence
gaattcatcttaaaagataatatccaaatttctagaagtggaaataatat
tggacttaaaatggcaggtagcagtttttgtcctagaggcatccgtggaa
atatgtggctggacagagccaacacgcatcaattaactttcagtgtagct
agataataaacagaagctacagcatggaaaatcaaagggcaaagcaggag
atatgctgactcatacaatcacatcatataattatatttctagctcatag
cttaaagttctgattaagatgccacagtagcttcaaactagaaattaagc
tattattcaccctgatttgtacaatcttcaactgcatataataaaggagt
ttagtatttatacttggatagtggaattttcattatggttgagaattcac
taaaatttatctcagttggtagaaaaagacaggcaacatgaatggatttg
ggattatctatcttttgtaattttagtatttattctaatacatgtctcaa
tgatacagataacaccaagttcaacttagcaaatgacatgaatgttcata
gaaagacaagacaatggaaatgagggacaatgtcgacatgtacaccaata
cacagtggattactaaaacaatataataatcattaactggtttgcaagat
catctccttttctttaatgtatttttttttaaacaatatcatttctaggc
aacactgatagagttatttttaatactaaaagtcaggtaattcagctgaa
cacaaagatagactaaaatgtggacaacatattcccttggttcctgaaac
tgacatttgacagtcttaggtacatgaatgctacaagataaagagatcat
aatcaccatcatatgtgtgatgcgtttgctgaggcattaactcagtgaag
tgaatgtgcatggttatgattatgatcacactgtagagtttagggtacca
gagtgtagtaagcaagtagggctacaatatcatacacaggcaaataagta
tatgcttctaatatgacaacatcttcatcatgagccttcatgttcactgg
tttagattttctttcagcgatttgaactcttatttctcagcgtagataca
tgggttc
gaattctgggagacaaagtatgcatggatggtcattatctttccttttga
ttcttttatttcctgacactataatataattgtatcttttcccccttcct
ttcttccctccaagttctcagataaattcctcattgctttctctcgaatt
catggcttcttttctcattcattgctatattatcttcatctatataaata
tctatgcatatatacaacctgactactctgtgcaatgttacttgcatctg
tgttttcagggctgaccatttgatgttcagtgtagtcttctctaaggaat
tacatttcaaacccatgtgtgtcatgagacacagaactatgtgaacatga
agctccttaccttttaaagaattctttatttataaagaatataatacaat
atacccatttatatttttataattttaaaattataatacatttatatgtt
ataataatacaattttatattacataatctataattataccattataata
attggtgtgctcttctctggataaaactatttctcctagtcagaatttct
taactgtcctggctctttgtgtagagttgaagtctcatgtctttcctcag
tccacctaacatgtctagtattatttttcattttcagctcatgtttaggc
agtcatgcttatcgttaatgaaggcaaaactaagataactgctaaaatac
ataaatcatattttgtgaaaactaatatactatcacctctgagtttactt
taagtcagcaatagcgatcactaggaattcttaagcttttctacaaaaat
acagaattggtccagaatgggaatgctttcgtgtacaggacatagccagc
tggagacttagaagaatacagttatggggcagtaaattggttccatcaag
cattgattgtcgcagcagagctactccagagtcttttgtgtgacttttgt
atcagtgcatttctattcttgcagatgtgccttagtattgaaattcctgt
ctgtgatactgtctgccttccaaagatctgaactgttatgaatgttgaac
tattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39718244_39719365
seq2: B6Ng01-027P03.b_42_1148 (reverse)

seq1  GAACCCATTGATCTACAGCCTGAGAAATAAGGATGTCAAATCTGCTGTAA  50
      ||||||||  ||||||   ||||||||||| ||  ||||||| |||| ||
seq2  GAACCCATGTATCTAC--GCTGAGAAATAA-GAGTTCAAATC-GCTG-AA  45

seq1  AGAAAATTCTAAACAGATGAACATGGAAGGCTCATGAATGGAGATGTTGT  100
      |||||| |||||||   ||||||| ||||||||||| ||| |||||||||
seq2  AGAAAA-TCTAAACCAGTGAACAT-GAAGGCTCATG-ATGAAGATGTTGT  92

seq1  CATATTAGAAGCATATACTTATTTTGCCTGTGTATGATATTTGTTAGCCC  150
      ||||||||||||||||||||| |||||||||||||||||||   ||||||
seq2  CATATTAGAAGCATATACTTA-TTTGCCTGTGTATGATATT--GTAGCCC  139

seq1  TACTTTGCTTACCTACACTCTGGTAACCCTAAACTCTTACAGTGTGATCA  200
      ||| ||||||| |||||||||||| ||||||||||| |||||||||||||
seq2  TAC-TTGCTTA-CTACACTCTGGT-ACCCTAAACTC-TACAGTGTGATCA  185

seq1  TAATCATAACCATGCACATTCACTTCACTGAGTTAATGCCTCAGCAAACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAACCATGCACATTCACTTCACTGAGTTAATGCCTCAGCAAACG  235

seq1  CATCACACATATGATGGTGATTATGATCTCTTTATCTTGTAGCATTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACATATGATGGTGATTATGATCTCTTTATCTTGTAGCATTCATG  285

seq1  TACCTAAGACTGTCAAATGTCAGTTTCAGGAACCAAGGGAATATGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAGACTGTCAAATGTCAGTTTCAGGAACCAAGGGAATATGTTGTC  335

seq1  CACATTTTAGTCTATCTTTGTGTTCAGCTGAATTACCTGACTTTTAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTAGTCTATCTTTGTGTTCAGCTGAATTACCTGACTTTTAGTAT  385

seq1  TAAAAATAACTCTATCAGTGTTGCCTAGAAATGATATTGTTTAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAACTCTATCAGTGTTGCCTAGAAATGATATTGTTTAAAAAAAA  435

seq1  ATACATTAAAGAAAAGGAGATGATCTTGCAAACCAGTTAATGATTATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAAAGAAAAGGAGATGATCTTGCAAACCAGTTAATGATTATTAT  485

seq1  ATTGTTTTAGTAATCCACTGTGTATTGGTGTACATGTCGACATTGTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTAGTAATCCACTGTGTATTGGTGTACATGTCGACATTGTCCCT  535

seq1  CATTTCCATTGTCTTGTCTTTCTATGAACATTCATGTCATTTGCTAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATTGTCTTGTCTTTCTATGAACATTCATGTCATTTGCTAAGTT  585

seq1  GAACTTGGTGTTATCTGTATCATTGAGACATGTATTAGAATAAATACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGTGTTATCTGTATCATTGAGACATGTATTAGAATAAATACTAA  635

seq1  AATTACAAAAGATAGATAATCCCAAATCCATTCATGTTGCCTGTCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAAAGATAGATAATCCCAAATCCATTCATGTTGCCTGTCTTTTT  685

seq1  CTACCAACTGAGATAAATTTTAGTGAATTCTCAACCATAATGAAAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACTGAGATAAATTTTAGTGAATTCTCAACCATAATGAAAATTCC  735

seq1  ACTATCCAAGTATAAATACTAAACTCCTTTATTATATGCAGTTGAAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAAGTATAAATACTAAACTCCTTTATTATATGCAGTTGAAGATT  785

seq1  GTACAAATCAGGGTGAATAATAGCTTAATTTCTAGTTTGAAGCTACTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATCAGGGTGAATAATAGCTTAATTTCTAGTTTGAAGCTACTGTG  835

seq1  GCATCTTAATCAGAACTTTAAGCTATGAGCTAGAAATATAATTATATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTAATCAGAACTTTAAGCTATGAGCTAGAAATATAATTATATGAT  885

seq1  GTGATTGTATGAGTCAGCATATCTCCTGCTTTGCCCTTTGATTTTCCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGTATGAGTCAGCATATCTCCTGCTTTGCCCTTTGATTTTCCATG  935

seq1  CTGTAGCTTCTGTTTATTATCTAGCTACACTGAAAGTTAATTGATGCGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTTCTGTTTATTATCTAGCTACACTGAAAGTTAATTGATGCGTG  985

seq1  TTGGCTCTGTCCAGCCACATATTTCCACGGATGCCTCTAGGACAAAAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTGTCCAGCCACATATTTCCACGGATGCCTCTAGGACAAAAACT  1035

seq1  GCTACCTGCCATTTTAAGTCCAATATTATTTCCACTTCTAGAAATTTGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTGCCATTTTAAGTCCAATATTATTTCCACTTCTAGAAATTTGGA  1085

seq1  TATTATCTTTTAAGATGAATTC  1122
      ||||||||||||||||||||||
seq2  TATTATCTTTTAAGATGAATTC  1107

seq1: chr9_39599950_39601019
seq2: B6Ng01-027P03.g_69_1124

seq1  GAATTCTGGGAGACAAAGTATGCATGGATGGTCATTATCTTTCCTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGACAAAGTATGCATGGATGGTCATTATCTTTCCTTTTGA  50

seq1  TTCTTTTATTTCCTGACACTATAATATAATTGTATCTTTTCCCCCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTTCCTGACACTATAATATAATTGTATCTTTTCCCCCTTCCT  100

seq1  TTCTTCCCTCCAAGTTCTCAGATAAATTCCTCATTGCTTTCTCTCGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTCCAAGTTCTCAGATAAATTCCTCATTGCTTTCTCTCGAATT  150

seq1  CATGGCTTCTTTTCTCATTCATTGCTATATTATCTTCATCTATATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTCTTTTCTCATTCATTGCTATATTATCTTCATCTATATAAATA  200

seq1  TCTATGCATATATACAACCTGACTACTCTGTGCAATGTTACTTGCATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCATATATACAACCTGACTACTCTGTGCAATGTTACTTGCATCTG  250

seq1  TGTTTTCAGGGCTGACCATTTGATGTTCAGTGTAGTCTTCTCTAAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGGGCTGACCATTTGATGTTCAGTGTAGTCTTCTCTAAGGAAT  300

seq1  TACATTTCAAACCCATGTGTGTCATGAGACACAGAACTATGTGAACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAACCCATGTGTGTCATGAGACACAGAACTATGTGAACATGA  350

seq1  AGCTCCTTACCTTTTAAAGAATTCTTTATTTATAAAGAATATAATACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTACCTTTTAAAGAATTCTTTATTTATAAAGAATATAATACAAT  400

seq1  ATACCCATTTATATTTTTATAATTTTAAAATTATAATACATTTATATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATTTATATTTTTATAATTTTAAAATTATAATACATTTATATGTT  450

seq1  ATAATAATACAATTTTATATTACATAATCTATAATTATACCATTATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATACAATTTTATATTACATAATCTATAATTATACCATTATAATA  500

seq1  ATTGGTGTGCTCTTCTCTGGATAAAACTATTTCTCCTAGTCAGAATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTGCTCTTCTCTGGATAAAACTATTTCTCCTAGTCAGAATTTCT  550

seq1  TAACTGTCCTGGCTCTTTGTGTAGAGTTGAAGTCTCATGTCTTTCCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTCCTGGCTCTTTGTGTAGAGTTGAAGTCTCATGTCTTTCCTCAG  600

seq1  TCCACCTAACATGTCTAGTATTATTTTTCATTTTCAGCTCATGTTTAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTAACATGTCTAGTATTATTTTTCATTTTCAGCTCATGTTTAGGC  650

seq1  AGTCATGCTTATCGTTAATGAAGGCAAAACTAAGATAACTGCTAAAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCTTATCGTTAATGAAGGCAAAACTAAGATAACTGCTAAAATAC  700

seq1  ATAAATCATATTTTGTGAAAACTAATATACTATCACCTCTGAGTTTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATATTTTGTGAAAACTAATATACTATCACCTCTGAGTTTACTT  750

seq1  TAAGTCAGCAATAGCGATCACTAGGAATTCTTAAGCTTTTCTACAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGCAATAGCGATCACTAGGAATTCTTAAGCTTTTCTACAAAAAT  800

seq1  ACAGAATTGGTCCAGAATGGGAATGCTTTCGTGTTACAGGACATAGCCAG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAGAATTGGTCCAGAATGGGAATGCTTTCGTG-TACAGGACATAGCCAG  849

seq1  CTGGAGACTTAGAAGAATACAGTTATGGGGCAGTAAATTGGTTCCATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACTTAGAAGAATACAGTTATGGGGCAGTAAATTGGTTCCATCAA  899

seq1  GCATTGATTGTCGCAAGCAGAGCTACTCCAGAGTCTTTTGTGTGACTTTT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCATTGATTGTCGC-AGCAGAGCTACTCCAGAGTCTTTTGTGTGACTTTT  948

seq1  GTATCAGTGCATTTTCTATTCTTGCAGATGTGCCTTAAGTATTGAAATTC  1000
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  GTATCAGTGCA-TTTCTATTCTTGCAGATGTGCCTT-AGTATTGAAATTC  996

seq1  CTTGGTCTTGTGATAACTGTCTGCCTTACAAGAGATCTTGAACTGTTTTA  1050
      ||  ||| |||||| |||||||||||| ||| ||||| |||||||  |||
seq2  CT--GTC-TGTGAT-ACTGTCTGCCTTCCAA-AGATC-TGAACTG--TTA  1038

seq1  TGAAATGTTTGTACTATTGT  1070
      || |||| ||| ||||||||
seq2  TG-AATG-TTGAACTATTGT  1056