BAC Information

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BAC

Clone NameB6Ng01-028F24
Chromosome9 (Build37)4 (Build37)
Map Location 120,358,514 - 120,358,703140,873,226 - 140,874,321
singlet/doubletsingletsinglet
Overlap geneMyrip
Upstream geneEndogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, LOC666044
Downstream geneEif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028F24.bB6Ng01-028F24.g
ACCDH858870DH858871
length4531,089
definitionDH858870|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F24, 5' end.DH858871|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,358,514 - 120,358,703)(140,873,226 - 140,874,321)
sequence
aaattcccagaaagcacatgatggctcacaaccattaaaaaaaaaaaaaa
aaatcagggctggagagatagctcagtggttaagagaattgactgttctt
cgagaggtcctgagttcaattcccagcaaccacatgatggctcacaacca
tctgtaatgggatctgatgacttcttctggtgtgtctgacagatacagtg
tactcatcatatatatatatatatatatatatatatagagagagagagag
agagagagagagctgggctttaatcccagcactggggaggcagaggcagg
cggatttctgagtttgaggccagcctggtctacagagtgagttctgggac
agccagggatacccagagaagccctgtcttgaaaaacaaaaaacaaaaaa
aaaaaaagaagaatatcaccacagtggaaaggctggggtgttgcccatcc
aga
gaattccatccttcctggtctatgtagtgagcaccaagctagccagagat
aaatagttaagactcctgctgagtgtgatagcgcatgcctataatcacaa
cactcatgttctgaaggtggaggcagggagatcgggagttcaaggacatc
cttagctacataatgagttcgaggccattgggaggcacaggaaaaacggg
acatggctcaggtgttacagtgctttctacataggcttggctgaatttgg
atccctaagacccatagagatagggactccccagctgaaacagccaggtc
tgggttcactaacagactgtacctcagaatacaaggtggagacagtggaa
gaagacagcatttgacctccacatgcacgtgctccaacacacatgtgcat
acacacacacacacacacacacacacacacacacacacacacacacacac
acacacagagcgatctgtatgatcaactcactcaactccgggacttcagg
ttacttctggagagtttttaaatgcttttttttttcagaagtagagatgc
tcttgaaaacttatttttaccagagaatggaaagacacctcactcagtat
agtgctccatgcacgagcttggggcctgggtttgactccttagcactgtg
gtaccaggcagacaccagcgtgtggttgcaatttgagcacagggcttgtg
gagacaggcaggtccctgaagctgatcagggagcctgactggatgagaga
actccaggctcagtgagtctctgtctcaagaagataaagtagagtatgac
tgggaagacgcctgatgtcgacttccgtctttatcacgcatgcttgcata
ccaacatgcacttgtgtgtgtgcccatacaaatgcattcatacatgcaat
acagaaacacaatatacaatataaggcttttcaaatctttgcctgatctc
agaaaaactcggtggcaatcagctagtgactagttatatatttatatgta
gtgatggtcccagagaacatctgatgggctagcttctgctgtcagggcag
catcataaaggacactcaagaaacctcatgcaagatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120358514_120358703
seq2: B6Ng01-028F24.b_85_461

seq1  --------------------------------------------------  0
                                                        
seq2  ATTAAAAAAAAAAAAAAAAATCAGGGCTGGAGAGATAGCTCAGTGGTTAA  50

seq1  --------------------------------------------------  0
                                                        
seq2  GAGAATTGACTGTTCTTCGAGAGGTCCTGAGTTCAATTCCCAGCAACCAC  100

seq1  --------------------------------------------------  0
                                                        
seq2  ATGATGGCTCACAACCATCTGTAATGGGATCTGATGACTTCTTCTGGTGT  150

seq1  -----------------------------------------ATTAAAAAA  9
                                               ||  | | |
seq2  GTCTGACAGATACAGTGTACTCATCATATATATATATATATATATATATA  200

seq1  AAAAAAAAGA-AGCCGGGCATAGTG-GTGCATGTCTTTAATCCCAGCACT  57
       | | | ||| ||   |  | || | | ||  | ||||||||||||||||
seq2  TATAGAGAGAGAGAGAGAGAGAGAGAGAGCTGGGCTTTAATCCCAGCACT  250

seq1  TGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  107
       ||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  GGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC  300

seq1  AGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA  157
      ||||||||||   |||||||||||| ||| ||||||| |||||||| | |
seq2  AGAGTGAGTTCTGGGACAGCCAGGGATACCCAGAGAAGCCCTGTCTTG-A  349

seq1  AAAACAAAACAAACAAACAAAAAAAAAAAAGAA  190
      ||||||||  |||||   |||||||||||||||
seq2  AAAACAAA--AAACA---AAAAAAAAAAAAGAA  377

seq1: chr4_140873226_140874321
seq2: B6Ng01-028F24.g_64_1152

seq1  GAATTCCATCCTTCCTGGTCTATGTAGTGAGCACCAAGCTAGCCAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTTCCTGGTCTATGTAGTGAGCACCAAGCTAGCCAGAGAT  50

seq1  AAATAGTTAAGACTCCTGCTGAGTGTGATAGCGCATGCCTATAATCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTAAGACTCCTGCTGAGTGTGATAGCGCATGCCTATAATCACAA  100

seq1  CACTCATGTTCTGAAGGTGGAGGCAGGGAGATCGGGAGTTCAAGGACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGTTCTGAAGGTGGAGGCAGGGAGATCGGGAGTTCAAGGACATC  150

seq1  CTTAGCTACATAATGAGTTCGAGGCCATTGGGAGGCACAGGAAAAACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTACATAATGAGTTCGAGGCCATTGGGAGGCACAGGAAAAACGGG  200

seq1  ACATGGCTCAGGTGTTACAGTGCTTTCTACATAGGCTTGGCTGAATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTCAGGTGTTACAGTGCTTTCTACATAGGCTTGGCTGAATTTGG  250

seq1  ATCCCTAAGACCCATAGAGATAGGGACTCCCCAGCTGAAACAGCCAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAAGACCCATAGAGATAGGGACTCCCCAGCTGAAACAGCCAGGTC  300

seq1  TGGGTTCACTAACAGACTGTACCTCAGAATACAAGGTGGAGACAGTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCACTAACAGACTGTACCTCAGAATACAAGGTGGAGACAGTGGAA  350

seq1  GAAGACAGCATTTGACCTCCACATGCACGTGCTCCAACACACATGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCATTTGACCTCCACATGCACGTGCTCCAACACACATGTGCAT  400

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  450

seq1  ACACACAGAGCGATCTGTATGATCAACTCACTCAACTCCGGGACTTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGCGATCTGTATGATCAACTCACTCAACTCCGGGACTTCAGG  500

seq1  TTACTTCTGGAGAGTTTTTAAATGCTTTTTTTTTTCAGAAGTAGAGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTGGAGAGTTTTTAAATGCTTTTTTTTTTCAGAAGTAGAGATGC  550

seq1  TCTTGAAAACTTATTTTTACCAGAGAATGGAAAGACACCTCACTCAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAACTTATTTTTACCAGAGAATGGAAAGACACCTCACTCAGTAT  600

seq1  AGTGCTCCATGCACGAGCTTGGGGCCTGGGTTTGACTCCTTAGCACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCATGCACGAGCTTGGGGCCTGGGTTTGACTCCTTAGCACTGTG  650

seq1  GTACCAGGCAGACACCAGCGTGTGGTTGCAATTTGAGCACAGGGCTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGCAGACACCAGCGTGTGGTTGCAATTTGAGCACAGGGCTTGTG  700

seq1  GAGACAGGCAGGTCCCTGAAGCTGATCAGGGAGCCTGACTGGATGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGCAGGTCCCTGAAGCTGATCAGGGAGCCTGACTGGATGAGAGA  750

seq1  ACTCCAGGCTCAGTGAGTCTCTGTCTCAAGAAGATAAAGTAGAGTATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGCTCAGTGAGTCTCTGTCTCAAGAAGATAAAGTAGAGTATGAC  800

seq1  TGGGAAGACGCCTGATGTCGACTTCCGTCTTTATCACGCATGCTTGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGACGCCTGATGTCGACTTCCGTCTTTATCACGCATGCTTGCATA  850

seq1  CCAACATGCACTTGTGTGTGTGCCCATACAAATGCATTCATACATGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAACATGCACTTGTGTGTGTGCCCATACAAATGCATTCATACATGC-AA  899

seq1  TACAGAAACACAATATACAATATAAGGCTTTTCAAA-CCTTGCCTGATCT  949
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  TACAGAAACACAATATACAATATAAGGCTTTTCAAATCTTTGCCTGATCT  949

seq1  CCAGAAAAACTCGGTGGCAATCAGCTAGTGACTTAGTTATTATTATTTAT  999
       ||||||||||||||||||||||||||||||| |||||||   |||||||
seq2  -CAGAAAAACTCGGTGGCAATCAGCTAGTGAC-TAGTTAT--ATATTTAT  995

seq1  ATGTTAGTGAATGTCCCCAGAGGACATCTGATGGGCTAGCTTCTGCTGTC  1049
      ||| ||||| |||  ||||||| |||||||||||||||||||||||||||
seq2  ATG-TAGTG-ATGGTCCCAGAGAACATCTGATGGGCTAGCTTCTGCTGTC  1043

seq1  AGGGCAGCATCCATAACAGGACATCCAAG-AACCCCATGCAGGATCTG  1096
      |||||||||| ||||| ||||||  |||| |||| |||||| ||||||
seq2  AGGGCAGCAT-CATAA-AGGACACTCAAGAAACCTCATGCAAGATCTG  1089