BAC Information

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BAC

Clone NameB6Ng01-028I21
Chromosome9 (Build37)
Map Location 108,833,280 - 108,969,572
singlet/doubletdoublet
Overlap geneUqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik
Upstream gene4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89
Downstream geneCcdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028I21.bB6Ng01-028I21.g
ACCDH859001DH859002
length523867
definitionDH859001|Mus musculus domesticus DNA, BAC clone: B6Ng01-028I21, 5' end.DH859002|Mus musculus domesticus DNA, BAC clone: B6Ng01-028I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,833,280 - 108,833,808)(108,968,711 - 108,969,572)
sequence
cttgtttctgccctggagcatcttgagtaacaagccagtttacctgggct
tctgcctcatctctcttgctttgtgcattagcctgcacattggctctttc
tccactctgtctgttctcatggagcagaagtctgaatgccagagatggtc
ctaaggcgaagagcatgtctgactcttaaacattttctttccttttactc
ttttcaacacaggatccagttacaaagtaatgaacacaggtgtgggaatt
cagatttgggggcggggtaaatggacacaaaggaatgtttgttcttgtat
aatgacaaataattatagcattgcttactttaaacatagtttctttagtc
agtcatggaggcccagacctccagtcccaccactgaagaggcaaaggcag
gtggatctctgtcagtgcaaggcaagccagtctacatagcaagctcctgg
ttagtcagagctacatagtgatcctccctccccctcccccctcctctcct
tcacctctaggctgtccctcccc
gaattctggctgatggctggatgcagagaaaagatgctcaaggtaccaga
agacccacttttctataggagccgtcgtggctcccattttcttctttgat
gcacagaattgcctaggggaattgtctgagaaccctgtcccagctatcct
ttagaatgtttgggcacacaggagtctgtgacttaaagaaaaaaacaatg
tggtctagtgagatggctcaatgggtaaaggtatctgccaccaagcctgc
cagcctaagttcagtccctagggcccgcatgatcaaaggagagagccaat
ctacagaagttgtcttctgatctccacatcccctgtgcccataaaataaa
taggtagccgggcatggtggcgcacacctttaatcccaacacttgagagg
cagaggcaggtggatttctgagttctcgaggccagcctggtctacagagt
gagatccaggacagccagggctatacagagaaaccctgtctcaaaaaaaa
ctaaataaataaataaataaataaaattaattttcgttagttgtggcatg
tgatgcctttactcccaatgttctggaggcaaaggtagggatagttatga
gagaaataagtagacagatagataggtaggtaggtagatcggtcagttgg
tcgatagataaaaggatgtttttgttttttaaagctgagaacaggtattc
tgcccccagaagcatcataacagagtttagtagcttagacatggtgagtc
taaaggtccccctcatttctttcctctaaagccatagaaaaaggtcttca
gtattcaagcttgtaattgctacctcttagaggctgagggcaggaagatc
ttgaattcaagccagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108833280_108833808
seq2: B6Ng01-028I21.b_48_576

seq1  GAATTCCTTGTTTCTGCCCTGGAGCATCTTGAGTAACAAGCCAGTTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTTTCTGCCCTGGAGCATCTTGAGTAACAAGCCAGTTTACC  50

seq1  TGGGCTTCTGCCTCATCTCTCTTGCTTTGTGCATTAGCCTGCACATTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCTGCCTCATCTCTCTTGCTTTGTGCATTAGCCTGCACATTGGC  100

seq1  TCTTTCTCCACTCTGTCTGTTCTCATGGAGCAGAAGTCTGAATGCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCACTCTGTCTGTTCTCATGGAGCAGAAGTCTGAATGCCAGAG  150

seq1  ATGGTCCTAAGGCGAAGAGCATGTCTGACTCTTAAACATTTTCTTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTAAGGCGAAGAGCATGTCTGACTCTTAAACATTTTCTTTCCTT  200

seq1  TTACTCTTTTCAACACAGGATCCAGTTACAAAGTAATGAACACAGGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTTTCAACACAGGATCCAGTTACAAAGTAATGAACACAGGTGTG  250

seq1  GGAATTCAGATTTGGGGGCGGGGTAAATGGACACAAAGGAATGTTTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGATTTGGGGGCGGGGTAAATGGACACAAAGGAATGTTTGTTC  300

seq1  TTGTATAATGACAAATAATTATAGCATTGCTTACTTTAAACATAGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATGACAAATAATTATAGCATTGCTTACTTTAAACATAGTTTCT  350

seq1  TTAGTCAGTCATGGAGGCCCAGACCTCCAGTCCCACCACTGAAGAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGTCATGGAGGCCCAGACCTCCAGTCCCACCACTGAAGAGGCAA  400

seq1  AGGCAGGTGGATCTCTGTCAGTGCAAGGCAAGCCAGTCTACATAGCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGATCTCTGTCAGTGCAAGGCAAGCCAGTCTACATAGCAAGC  450

seq1  TCCTGGTTAGTCAGAGCTACATAGTGATCCTCCCTCCCCCTCCCCCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTAGTCAGAGCTACATAGTGATCCTCCCTCCCCCTCCCCCCTCC  500

seq1  TCTCCTTCCCCTCTCCCCTCTCCCTCCCC  529
      |||||||| |||||   || |||||||||
seq2  TCTCCTTCACCTCTAGGCTGTCCCTCCCC  529

seq1: chr9_108968711_108969572
seq2: B6Ng01-028I21.g_66_932 (reverse)

seq1  CTCTGGCTTGAATTCATGATCTTCCTG-CCTCAGCCTCTAAGATGCTAGC  49
      |||||||||||||||| |||||||||| ||||||||||||||| | ||||
seq2  CTCTGGCTTGAATTCAAGATCTTCCTGCCCTCAGCCTCTAAGA-GGTAGC  49

seq1  -ATTACAAGCTTGACTACTGAAGACC-TTTTCTATGGCCTTAGAGGAAAG  97
       ||||||||||||| ||||||||||| ||||||||||| |||||||||||
seq2  AATTACAAGCTTGAATACTGAAGACCTTTTTCTATGGCTTTAGAGGAAAG  99

seq1  AAATGA-GGGGACCTTTAGACTCACCATGTCTAAGCTACTAAACTCTGTT  146
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGGGGACCTTTAGACTCACCATGTCTAAGCTACTAAACTCTGTT  149

seq1  ATGATGCTTCTGGGGGCAGAATACCTGTTCTCAGCTTTAAAAA--CAAAA  194
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  ATGATGCTTCTGGGGGCAGAATACCTGTTCTCAGCTTTAAAAAACAAAAA  199

seq1  CATCCTTTTATCTATCGACCAACTGACCGATCTACCTACCTACCTATCTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTTATCTATCGACCAACTGACCGATCTACCTACCTACCTATCTA  249

seq1  TCTGTCTACTTATTTCTCTCATAACTATCCCTACCTTTGCCTCCAGAACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTACTTATTTCTCTCATAACTATCCCTACCTTTGCCTCCAGAACA  299

seq1  TTGGGAGTAAAGGCATCACATGCCACAACTAACGAAAATTAATTTTATTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTAAAGGCATCACATGCCACAACTAACGAAAATTAATTTTATTT  349

seq1  ATTTATTTATTTATTTAGTTTTTTTTGAGACAGGGTTTCTCTGTATAGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTAGTTTTTTTTGAGACAGGGTTTCTCTGTATAGCC  399

seq1  CTGGCTGTCCTGGATCTCACTCTGTAGACCAGGCTGGCCTCGAGAACTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGGATCTCACTCTGTAGACCAGGCTGGCCTCGAGAACTCA  449

seq1  GAAATCCACCTGCCTCTGCCTCTCAAGTGTTGGGATTAAAGGTGTGCGCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCACCTGCCTCTGCCTCTCAAGTGTTGGGATTAAAGGTGTGCGCC  499

seq1  ACCATGCCCGGCTACCTATTTATTTTATGGGCACAGGGGATGTGGAGATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCCGGCTACCTATTTATTTTATGGGCACAGGGGATGTGGAGATC  549

seq1  AGAAGACAACTTCTGTAGATTGGCTCTCTCCTTTGATCATGCGGGCCCTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAACTTCTGTAGATTGGCTCTCTCCTTTGATCATGCGGGCCCTA  599

seq1  GGGACTGAACTTAGGCTGGCAGGCTTGGTGGCAGATACCTTTACCCATTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGAACTTAGGCTGGCAGGCTTGGTGGCAGATACCTTTACCCATTG  649

seq1  AGCCATCTCACTAGACCACATTGTTTTTTTCTTTAAGTCACAGACTCCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCACTAGACCACATTGTTTTTTTCTTTAAGTCACAGACTCCTG  699

seq1  TGTGCCCAAACATTCTAAAGGATAGCTGGGACAGGGTTCTCAGACAATTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAAACATTCTAAAGGATAGCTGGGACAGGGTTCTCAGACAATTC  749

seq1  CCCTAGGCAATTCTGTGCATCAAAGAAGAAAATGGGAGCCACGACGGCTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGCAATTCTGTGCATCAAAGAAGAAAATGGGAGCCACGACGGCTC  799

seq1  CTATAGAAAAGTGGGTCTTCTGGTACCTTGAGCATCTTTTCTCTGCATCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAAAGTGGGTCTTCTGGTACCTTGAGCATCTTTTCTCTGCATCC  849

seq1  AGCCATCAGCCAGAATTC  862
      ||||||||||||||||||
seq2  AGCCATCAGCCAGAATTC  867