BAC Information

Click to search

BAC

Clone NameB6Ng01-029I02
ChromosomeX (Build37)9 (Build37)
Map Location 116,853,421 - 116,853,9244,590,058 - 4,591,112
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC385417
Downstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029I02.bB6Ng01-029I02.g
ACCDH859689DH859690
length1,0231,056
definitionDH859689|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I02, 5' end.DH859690|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,853,421 - 116,853,924)(4,590,058 - 4,591,112)
sequence
gaattctgggcactcccttttcttttttaaattctaaagagtttgtttgt
ttgtctgtttgtttatacttattcactttacatcctgctcactgcccccc
tcccatacttctccatgccccttccctttctcctctgagcagatggacag
gtatctctccaccctggcacttcaattttctgcaaggctaggcacttcct
ctcccattgacgtcatacagtgcaagccagctagaagaaaatatcctaca
tacagacaacaacttttcggatagctcccacatttgttggctactcacat
gaaggtcaagctgtacatctgccacatatgagcagagaagcctaggttca
gcccatatatgttctttggttagtaggtcagtctctgtcagccccaagag
tcctagttttttgattctgttgatcttcctgtggagttcctatccccttt
ggggtccacaatcctcacccctattctttcataagagtccccaagctcta
gccactgtttggctgaggatgtctgcacctgtatgagtcagctgatgagc
cctctcagaggacagccatgctggactcttgtctacaagcataacagaat
atcagtaatagtgtcagggattggtgtttctccatggtagcctgttattg
gtttgctgttccttcagtctttgtttgatttccaacccccgaatttcttg
taaattttggatcaaaagtttgctgagtgggttggtgtccttattgcttc
actgacatgcctgcctggccacaagtgacaatctcaccaggctccgtaag
aatgttgtggacttttaatggtggtatataaatgccagagccctaagagg
gttgtacatctgccccacccccaaccacacccatcactgccactgctacc
acaactgctgccccagctgttcctgctgttcctgctgttcctgctgttgc
tggttagagatatgctgaagacgatcagtatggccccaaggaactcaaag
tctctaattatcagagtagtcta
gaattccaaatacctttaggctgctgtccttcagaatgcacctcaggcaa
cactcctggcagtgccttctgttaattaaactttatcttggctattattg
catcctagtcatgaaggtatgtttatattattcgtcagaccttattactt
ttgaataaagaaagatgctctaggagttaaaataaagttctgtccacaaa
gggatggcctggcttagagctaagcttttcagttccacttaagcttctgg
tattactgtgtctttgtaatgcaaatttttcttctgaagaaggtttttct
ggttctgggaactttcatggtgaaggaagtttatacaactcatgtgcagt
catctcgaatggttctgcacattatctcgatacctactagtgaaatcagc
atgtctctgccaagtatttaagtcatgctttgcatcagccaatcaactag
tggcctaaaacagtgcatgttgaccttgcttgtctctctatttatctctt
cttttctttttttctagctgcatagcatttatgtttagtttcttttcagc
acaaaacttatgaagacatgcatgtgaaaatttacaaatctgaaatcaag
tttacttatcatttcttcagaaagggaaacactacaaaagattgatttgc
ttctatatacttttgataaatttattttagaagttcttgctttgtttttt
tcatactttactgaaatctaatgtgtatcttttgagtctaaattttcatt
ttattttattgggaattgagataaatattctcagataaatatttcagact
aatgataaacttgggcaaaagctatgggatagaagaaagaaggtcaagct
gtttaaataacagaaagggcagcaagcttaacagaacacagacaggcatg
atggactgttggaaaccttcatccctcatcctcatctaacagttagcttg
tacttctggtctgtggatgggaccacatattgaatataaatcagcaaact
acagtttgcaattattggtactaccaatattcgggtttctatttattctc
aaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_116853421_116853924
seq2: B6Ng01-029I02.b_60_552

seq1  TTTCTTTTTTAAATTC--------------ATTTATATATT------TAA  30
      ||||||||||||||||               ||| | | ||      || 
seq2  TTTCTTTTTTAAATTCTAAAGAGTTTGTTTGTTTGTCTGTTTGTTTATAC  50

seq1  GTATTCACTTTACATCCTGCTCACTAATACTCTCCCTGTCACCTCCTCCT  80
       ||||||||||||||||||||||        || ||   | ||||| | |
seq2  TTATTCACTTTACATCCTGCTCA--------CTGCC---CCCCTCC-CAT  88

seq1  ACAATCATTCTTCCATCCCCAGCCCCATTTTCCTGTCATCAGTAGGAGCA  130
      ||     ||| ||||| |||   ||| || |||| | | |||  ||| ||
seq2  AC-----TTC-TCCATGCCCCTTCCCTTTCTCCTCTGAGCAGATGGA-CA  131

seq1  CCCCTGGGTATC-CCCAACCCTGCCTAGTGCTTCAAGTCCTTGTGAGGAT  179
            |||||| | | ||||||    |  |||||| |   ||  ||| |
seq2  ------GGTATCTCTCCACCCTG----GCACTTCAATTTTCTGCAAGGCT  171

seq1  AAATGCATTCTCTCTCAATGAGGCCAGAGAAGATAGGCAAACTAGAAGAA  229
      |    | | ||||| || ||| | || | |    | || | |||||||||
seq2  AGGCACTTCCTCTCCCATTGACGTCATACAGTGCAAGCCAGCTAGAAGAA  221

seq1  AATAACTAATATATAGGCAACAGC-TTTGGAATACCCACATGGTCCAGAT  278
      |||| |  | ||| || ||||| | ||| | ||| |        ||| ||
seq2  AATATCCTACATACAGACAACAACTTTTCGGATAGC------TCCCACAT  265

seq1  TTCTGGG--ACCCAAATGAAGATCAATATGTGCATCTGCTACCATAAGGA  326
      || | ||  || || |||||| ||||  ||| ||||||| | |||| |  
seq2  TTGTTGGCTACTCACATGAAGGTCAAGCTGTACATCTGCCA-CATATGAG  314

seq1  AAGGGAGACCTTGGTCAATATTTTGTATGTTCATGGGTTGGTGGTTCAGT  376
       || ||  ||| |||  |     | ||||||| | |||| || | |||||
seq2  CAGAGAAGCCTAGGTTCAGCCCATATATGTTCTTTGGTTAGTAGGTCAGT  364

seq1  CTCTGAAACTCCTAAGGGCCCAGGTGAGTTGACACTGTTGGTCTTCCTGT  426
      |||||  |  || ||| | ||  ||   ||||  |||||| |||||||||
seq2  CTCTGTCAGCCCCAAGAGTCCTAGTTTTTTGATTCTGTTGATCTTCCTGT  414

seq1  AGAGATCCTAT-CCCTTTCGGAACTGCAATCCTTTCTCCTGTTCTTCAAT  475
       ||| |||||| |||||| ||  |  |||||||  | ||| |||||  ||
seq2  GGAGTTCCTATCCCCTTTGGGGTCCACAATCCTCACCCCTATTCTTTCAT  464

seq1  AAGAGTCCCCAAGCTCCATCCCCTGTTTG  504
      |||||||||||||||| | || |||||||
seq2  AAGAGTCCCCAAGCTCTAGCCACTGTTTG  493

seq1: chr9_4590058_4591112
seq2: B6Ng01-029I02.g_66_1121

seq1  GAATTCCAAATACCTTTAGGCTGCTGTCCTTCAGAATGCACCTCAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATACCTTTAGGCTGCTGTCCTTCAGAATGCACCTCAGGCAA  50

seq1  CACTCCTGGCAGTGCCTTCTGTTAATTAAACTTTATCTTGGCTATTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGGCAGTGCCTTCTGTTAATTAAACTTTATCTTGGCTATTATTG  100

seq1  CATCCTAGTCATGAAGGTATGTTTATATTATTCGTCAGACCTTATTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGTCATGAAGGTATGTTTATATTATTCGTCAGACCTTATTACTT  150

seq1  TTGAATAAAGAAAGATGCTCTAGGAGTTAAAATAAAGTTCTGTCCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAAGAAAGATGCTCTAGGAGTTAAAATAAAGTTCTGTCCACAAA  200

seq1  GGGATGGCCTGGCTTAGAGCTAAGCTTTTCAGTTCCACTTAAGCTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCCTGGCTTAGAGCTAAGCTTTTCAGTTCCACTTAAGCTTCTGG  250

seq1  TATTACTGTGTCTTTGTAATGCAAATTTTTCTTCTGAAGAAGGTTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGTGTCTTTGTAATGCAAATTTTTCTTCTGAAGAAGGTTTTTCT  300

seq1  GGTTCTGGGAACTTTCATGGTGAAGGAAGTTTATACAACTCATGTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGGAACTTTCATGGTGAAGGAAGTTTATACAACTCATGTGCAGT  350

seq1  CATCTCGAATGGTTCTGCACATTATCTCGATACCTACTAGTGAAATCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCGAATGGTTCTGCACATTATCTCGATACCTACTAGTGAAATCAGC  400

seq1  ATGTCTCTGCCAAGTATTTAAGTCATGCTTTGCATCAGCCAATCAACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTGCCAAGTATTTAAGTCATGCTTTGCATCAGCCAATCAACTAG  450

seq1  TGGCCTAAAACAGTGCATGTTGACCTTGCTTGTCTCTCTATTTATCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAAAACAGTGCATGTTGACCTTGCTTGTCTCTCTATTTATCTCTT  500

seq1  CTTTTCTTTTTTTCTAGCTGCATAGCATTTATGTTTAGTTTCTTTTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTTTCTAGCTGCATAGCATTTATGTTTAGTTTCTTTTCAGC  550

seq1  ACAAAACTTATGAAGACATGCATGTGAAAATTTACAAATCTGAAATCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTTATGAAGACATGCATGTGAAAATTTACAAATCTGAAATCAAG  600

seq1  TTTACTTATCATTTCTTCAGAAAGGGAAACACTACAAAAGATTGATTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATCATTTCTTCAGAAAGGGAAACACTACAAAAGATTGATTTGC  650

seq1  TTCTATATACTTTTGATAAATTTA-TTTAGAAGTTCTTGCTTTGTTTTTT  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCTATATACTTTTGATAAATTTATTTTAGAAGTTCTTGCTTTGTTTTTT  700

seq1  TCATACTTTACTGAAATCTAATGTGTATCTTTTGAGTCTAAATTTTCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTTACTGAAATCTAATGTGTATCTTTTGAGTCTAAATTTTCATT  750

seq1  TTATTTTATTGGGAATTGAGATAAATATTCTCAGATAAATA-TTCAGACT  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTATTTTATTGGGAATTGAGATAAATATTCTCAGATAAATATTTCAGACT  800

seq1  AATGATAAACTT-GGCAAAAGCTATGGGATAGAAGAAAGAAGGTCAAGCT  847
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATGATAAACTTGGGCAAAAGCTATGGGATAGAAGAAAGAAGGTCAAGCT  850

seq1  G-TTAAATAACAGAAAGGGCAGCAAGCTTAACAGAACACAGACAAGGCAT  896
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTTAAATAACAGAAAGGGCAGCAAGCTTAACAGAACACAGAC-AGGCAT  899

seq1  GATGGACTGTTGGAAACC-TCATCCCTCATCCCTCATCTAACAGTTAGCT  945
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GATGGACTGTTGGAAACCTTCATCCCTCAT-CCTCATCTAACAGTTAGCT  948

seq1  TGTTACTTCTGGGTCTGTGAATGGTA-CACATATTGAATATATAATCAGC  994
      || ||||||| |||||||| |||| | ||||||||||||||| |||||||
seq2  TG-TACTTCT-GGTCTGTGGATGGGACCACATATTGAATATA-AATCAGC  995

seq1  AAAACTACAGTTTGCAATTATTGGTACTACAAATATTCAGG-TTCTATTA  1043
       ||||||||||||||||||||||||||||| ||||||| || ||||||| 
seq2  -AAACTACAGTTTGCAATTATTGGTACTACCAATATTCGGGTTTCTATTT  1044

seq1  TTCCTAAAAGAG  1055
       | || ||||||
seq2  ATTCTCAAAGAG  1056